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Genes within 1Mb (chr1:44065880:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 415731 sc-eQTL 4.03e-01 -0.18 0.214 0.05 CD4_CTL L2
ENSG00000066322 ELOVL1 697806 sc-eQTL 4.41e-01 0.155 0.201 0.05 CD4_CTL L2
ENSG00000070785 EIF2B3 -920842 sc-eQTL 1.34e-02 -0.531 0.213 0.05 CD4_CTL L2
ENSG00000117395 EBNA1BP2 794944 sc-eQTL 8.49e-01 0.0418 0.22 0.05 CD4_CTL L2
ENSG00000117408 IPO13 118930 sc-eQTL 1.44e-01 -0.292 0.199 0.05 CD4_CTL L2
ENSG00000117410 ATP6V0B 91393 sc-eQTL 1.54e-01 0.29 0.203 0.05 CD4_CTL L2
ENSG00000117419 ERI3 -289380 sc-eQTL 3.67e-01 -0.196 0.216 0.05 CD4_CTL L2
ENSG00000126088 UROD -945070 sc-eQTL 8.41e-01 0.0433 0.215 0.05 CD4_CTL L2
ENSG00000126091 ST3GAL3 360056 sc-eQTL 4.79e-01 -0.153 0.215 0.05 CD4_CTL L2
ENSG00000126107 HECTD3 -945444 sc-eQTL 7.76e-01 0.0591 0.207 0.05 CD4_CTL L2
ENSG00000132768 DPH2 95880 sc-eQTL 7.83e-02 0.371 0.209 0.05 CD4_CTL L2
ENSG00000142937 RPS8 -709371 sc-eQTL 3.10e-03 -0.258 0.0863 0.05 CD4_CTL L2
ENSG00000159479 MED8 676072 sc-eQTL 4.74e-01 0.146 0.204 0.05 CD4_CTL L2
ENSG00000173846 PLK3 -734497 sc-eQTL 9.00e-01 -0.0196 0.156 0.05 CD4_CTL L2
ENSG00000178028 DMAP1 -147575 sc-eQTL 3.72e-01 -0.197 0.221 0.05 CD4_CTL L2
ENSG00000178922 HYI 611891 sc-eQTL 7.09e-01 0.0705 0.189 0.05 CD4_CTL L2
ENSG00000187147 RNF220 -339314 sc-eQTL 8.85e-01 -0.0254 0.175 0.05 CD4_CTL L2
ENSG00000198198 SZT2 675998 sc-eQTL 2.87e-01 -0.216 0.203 0.05 CD4_CTL L2
ENSG00000198520 ARMH1 -608812 sc-eQTL 6.84e-02 0.29 0.158 0.05 CD4_CTL L2
ENSG00000066135 KDM4A 415731 sc-eQTL 5.55e-01 0.143 0.241 0.058 gdT L2
ENSG00000066322 ELOVL1 697806 sc-eQTL 7.69e-01 0.0697 0.237 0.058 gdT L2
ENSG00000070785 EIF2B3 -920842 sc-eQTL 6.25e-01 -0.111 0.228 0.058 gdT L2
ENSG00000117395 EBNA1BP2 794944 sc-eQTL 7.71e-01 0.0693 0.238 0.058 gdT L2
ENSG00000117399 CDC20 706899 sc-eQTL 7.12e-01 0.0594 0.16 0.058 gdT L2
ENSG00000117408 IPO13 118930 sc-eQTL 1.78e-03 0.691 0.217 0.058 gdT L2
ENSG00000117410 ATP6V0B 91393 sc-eQTL 4.39e-01 -0.158 0.204 0.058 gdT L2
ENSG00000117411 B4GALT2 86937 sc-eQTL 6.14e-01 -0.106 0.21 0.058 gdT L2
ENSG00000117419 ERI3 -289380 sc-eQTL 7.44e-01 0.081 0.247 0.058 gdT L2
ENSG00000126088 UROD -945070 sc-eQTL 9.94e-01 0.0017 0.209 0.058 gdT L2
ENSG00000126091 ST3GAL3 360056 sc-eQTL 7.20e-02 -0.407 0.224 0.058 gdT L2
ENSG00000126106 TMEM53 -608601 sc-eQTL 5.41e-01 -0.13 0.212 0.058 gdT L2
ENSG00000126107 HECTD3 -945444 sc-eQTL 9.62e-01 0.0114 0.242 0.058 gdT L2
ENSG00000132768 DPH2 95880 sc-eQTL 6.98e-01 -0.0869 0.223 0.058 gdT L2
ENSG00000142937 RPS8 -709371 sc-eQTL 3.84e-01 -0.0778 0.0892 0.058 gdT L2
ENSG00000142945 KIF2C -673938 sc-eQTL 9.50e-01 0.00834 0.132 0.058 gdT L2
ENSG00000159479 MED8 676072 sc-eQTL 3.28e-01 -0.221 0.224 0.058 gdT L2
ENSG00000173846 PLK3 -734497 sc-eQTL 6.96e-01 0.0592 0.151 0.058 gdT L2
ENSG00000178028 DMAP1 -147575 sc-eQTL 1.34e-01 0.338 0.225 0.058 gdT L2
ENSG00000178922 HYI 611891 sc-eQTL 6.55e-01 0.105 0.234 0.058 gdT L2
ENSG00000187147 RNF220 -339314 sc-eQTL 3.33e-01 0.182 0.187 0.058 gdT L2
ENSG00000198198 SZT2 675998 sc-eQTL 9.29e-01 0.019 0.214 0.058 gdT L2
ENSG00000198520 ARMH1 -608812 sc-eQTL 2.64e-01 0.228 0.204 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117407 ARTN 132560 pQTL 0.0234 0.14 0.0616 0.00153 0.0 0.0397
ENSG00000159214 CCDC24 74521 eQTL 2.5e-06 -0.396 0.0836 0.0 0.0 0.0422
ENSG00000178028 DMAP1 -147575 eQTL 4.44e-05 0.194 0.0472 0.0 0.0 0.0422

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066056 \N 764898 2.76e-07 1.3e-07 4.48e-08 1.82e-07 9.79e-08 9.91e-08 1.6e-07 5.48e-08 1.45e-07 5.42e-08 1.55e-07 9e-08 1.52e-07 7.13e-08 6.04e-08 7.53e-08 4.09e-08 1.33e-07 5.75e-08 4.31e-08 1.19e-07 1.27e-07 1.45e-07 2.91e-08 1.5e-07 1.14e-07 1.07e-07 9.61e-08 1.16e-07 1.07e-07 9.92e-08 3.59e-08 3.73e-08 8.11e-08 5.99e-08 3.65e-08 5.29e-08 8.71e-08 6.86e-08 3.8e-08 5.28e-08 1.33e-07 5.21e-08 1.25e-08 3.83e-08 1.84e-08 1.22e-07 1.88e-09 5.02e-08
ENSG00000117425 \N -777373 2.67e-07 1.3e-07 4.47e-08 1.81e-07 9.24e-08 9.91e-08 1.6e-07 5.48e-08 1.45e-07 5.42e-08 1.55e-07 9e-08 1.52e-07 6.76e-08 6.04e-08 7.53e-08 4.09e-08 1.27e-07 5.75e-08 4.23e-08 1.19e-07 1.27e-07 1.45e-07 2.64e-08 1.5e-07 1.14e-07 1.07e-07 9.65e-08 1.12e-07 1.07e-07 9.92e-08 3.03e-08 4.02e-08 8.11e-08 6.34e-08 3.62e-08 5.22e-08 8.63e-08 6.63e-08 3.76e-08 4.92e-08 1.36e-07 5.21e-08 1.28e-08 3.84e-08 1.84e-08 1.22e-07 1.88e-09 5.04e-08
ENSG00000159214 CCDC24 74521 6.08e-06 6.14e-06 6.38e-07 3.47e-06 1.54e-06 2.21e-06 8.57e-06 1.15e-06 4.67e-06 3.02e-06 7.76e-06 2.79e-06 1.02e-05 2.24e-06 9.51e-07 3.97e-06 2.92e-06 3.72e-06 1.65e-06 1.54e-06 2.78e-06 5.62e-06 4.66e-06 1.89e-06 8.96e-06 2.16e-06 2.72e-06 1.74e-06 6.2e-06 6.97e-06 2.93e-06 4.46e-07 7.92e-07 2.27e-06 2e-06 1.09e-06 1.02e-06 5.14e-07 9.82e-07 6.24e-07 8.05e-07 7.97e-06 6.29e-07 1.54e-07 7.82e-07 1.13e-06 1.15e-06 7.35e-07 4.38e-07
ENSG00000178028 DMAP1 -147575 3.68e-06 2.62e-06 3e-07 2.02e-06 4.91e-07 7.79e-07 2.33e-06 6.85e-07 1.88e-06 9.88e-07 2.49e-06 1.41e-06 3.83e-06 1.36e-06 9.73e-07 1.54e-06 1.37e-06 2.25e-06 1.15e-06 1.28e-06 1.14e-06 3.02e-06 2.51e-06 1.01e-06 3.89e-06 1.35e-06 1.36e-06 1.54e-06 2.57e-06 2.29e-06 1.89e-06 3.1e-07 5.65e-07 1.26e-06 1.33e-06 8.84e-07 7.83e-07 4.2e-07 1.13e-06 3.76e-07 2.25e-07 3.33e-06 5.2e-07 1.95e-07 3.27e-07 2.98e-07 6.76e-07 2.24e-07 2.31e-07