Genes within 1Mb (chr1:43596488:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066135 KDM4A -53661 eQTL 3.02e-04 -0.063 0.0174 0.0107 0.00916 0.248
ENSG00000117407 ARTN -336832 eQTL 1.15e-03 0.144 0.044 0.0 0.0 0.248
ENSG00000117408 IPO13 -350462 eQTL 1.17e-02 -0.0446 0.0176 0.0 0.0 0.248
ENSG00000117410 ATP6V0B -377999 eQTL 2.03e-12 -0.0723 0.0101 0.0 0.0 0.248
ENSG00000126091 ST3GAL3 -109336 eQTL 1.64e-03 0.0532 0.0168 0.0 0.0 0.248
ENSG00000142949 PTPRF 71301 pQTL 4.10e-03 0.0828 0.0288 0.00308 0.00339 0.251
ENSG00000142949 PTPRF 71301 eQTL 2.25e-04 0.115 0.0309 0.00124 0.0 0.248
ENSG00000159479 MED8 206680 eQTL 5.82e-05 -0.0578 0.0143 0.0 0.0 0.248
ENSG00000178922 HYI 142499 eQTL 3.70e-02 -0.0484 0.0232 0.0 0.0 0.248
ENSG00000227533 SLC2A1-AS1 637439 eQTL 4.77e-02 -0.0867 0.0437 0.0 0.0 0.248
ENSG00000234694 AL139289.2 237830 eQTL 6.23e-03 -0.125 0.0455 0.00231 0.00134 0.248


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066135 KDM4A -53661 7.83e-06 9.16e-06 1.36e-06 4.56e-06 2.19e-06 3.93e-06 1.02e-05 1.68e-06 7.35e-06 4.31e-06 1.05e-05 4.99e-06 1.29e-05 3.9e-06 2.13e-06 5.79e-06 3.77e-06 5.96e-06 2.63e-06 2.63e-06 4.61e-06 8e-06 7.06e-06 2.98e-06 1.27e-05 3.19e-06 4.48e-06 3.39e-06 9.48e-06 8.06e-06 4.57e-06 5.43e-07 1.21e-06 2.85e-06 3.31e-06 2.14e-06 1.72e-06 1.57e-06 1.63e-06 9.52e-07 1.03e-06 1.13e-05 1.3e-06 1.5e-07 7.07e-07 1.32e-06 1.06e-06 7.28e-07 4.78e-07
ENSG00000117407 ARTN -336832 1.11e-06 7.46e-07 1.63e-07 3.81e-07 1.09e-07 3.24e-07 7.02e-07 2.21e-07 6.92e-07 3.12e-07 1.07e-06 5.08e-07 1.15e-06 1.84e-07 3.61e-07 3.57e-07 5.63e-07 4.16e-07 2.92e-07 2.25e-07 2.26e-07 5.83e-07 5.41e-07 2.92e-07 1.42e-06 2.44e-07 4.55e-07 3.88e-07 6.91e-07 7.71e-07 4.26e-07 6.56e-08 9.46e-08 1.69e-07 3.69e-07 1.83e-07 1.45e-07 1.06e-07 8.06e-08 2.24e-08 1.44e-07 9.49e-07 5.44e-08 1.11e-08 1.92e-07 2.68e-08 1.11e-07 2.35e-08 6.14e-08
ENSG00000117408 IPO13 -350462 1.01e-06 6.65e-07 1.45e-07 4.55e-07 1.12e-07 2.77e-07 6.54e-07 1.91e-07 6.27e-07 3.1e-07 1.03e-06 4.43e-07 1.05e-06 1.56e-07 3.16e-07 3.36e-07 5.06e-07 4.27e-07 2.79e-07 2.02e-07 2.57e-07 5.5e-07 4.66e-07 2.49e-07 1.28e-06 2.54e-07 4.16e-07 3.78e-07 5.9e-07 7.06e-07 3.81e-07 6.06e-08 5.89e-08 1.69e-07 3.61e-07 1.52e-07 1.05e-07 9.46e-08 7.5e-08 2.77e-08 1.46e-07 7.38e-07 4.47e-08 1.05e-08 1.6e-07 1.48e-08 1.32e-07 1.77e-08 6.36e-08
ENSG00000117410 ATP6V0B -377999 8.63e-07 5.6e-07 1.27e-07 4.29e-07 9.45e-08 2.12e-07 5.9e-07 1.55e-07 4.61e-07 2.72e-07 8.28e-07 3.62e-07 9.1e-07 1.52e-07 2.77e-07 2.55e-07 3.63e-07 4.11e-07 2.25e-07 1.63e-07 2.52e-07 4.38e-07 4.12e-07 1.78e-07 9.71e-07 2.6e-07 3.04e-07 2.74e-07 4.63e-07 5.67e-07 3.49e-07 7.4e-08 5.71e-08 1.38e-07 3.34e-07 1.19e-07 1.05e-07 7.98e-08 6.41e-08 3.58e-08 1.23e-07 6.49e-07 2.88e-08 1.92e-08 1.29e-07 1.29e-08 1.03e-07 1.11e-08 5.13e-08
ENSG00000126091 ST3GAL3 -109336 4.33e-06 4.75e-06 7.43e-07 2.43e-06 1.14e-06 1.27e-06 4.08e-06 9.52e-07 3.9e-06 2.02e-06 4.71e-06 3.2e-06 7.44e-06 2.15e-06 1.42e-06 2.49e-06 2.04e-06 2.76e-06 1.36e-06 9.52e-07 2.62e-06 4.35e-06 3.54e-06 1.65e-06 5.26e-06 1.37e-06 2.27e-06 1.81e-06 4.21e-06 4.04e-06 1.96e-06 4.53e-07 7.52e-07 1.76e-06 1.94e-06 9.08e-07 9.59e-07 4.73e-07 1.08e-06 3.82e-07 4.53e-07 5.31e-06 3.98e-07 1.63e-07 4.03e-07 3.57e-07 7.12e-07 2.41e-07 3.18e-07
ENSG00000142949 PTPRF 71301 5.49e-06 6.92e-06 7.06e-07 3.67e-06 1.72e-06 2.09e-06 8.96e-06 1.18e-06 4.77e-06 3.17e-06 8.3e-06 2.94e-06 1.04e-05 2.8e-06 1.03e-06 4.01e-06 3.19e-06 3.75e-06 1.65e-06 1.6e-06 3.02e-06 6.99e-06 5.36e-06 2.06e-06 9.63e-06 2.21e-06 2.92e-06 1.86e-06 6.94e-06 7.61e-06 3.37e-06 4.51e-07 8.21e-07 2.39e-06 2e-06 1.46e-06 1.18e-06 5.44e-07 1.42e-06 5.49e-07 7.83e-07 8.15e-06 6.7e-07 1.6e-07 7.54e-07 1.08e-06 1.04e-06 6.84e-07 5.85e-07
ENSG00000159479 MED8 206680 1.43e-06 1.29e-06 2.88e-07 1.28e-06 3.76e-07 6.28e-07 1.24e-06 4.35e-07 1.74e-06 6.77e-07 2.07e-06 9.11e-07 2.67e-06 3.61e-07 4.96e-07 9.52e-07 9.71e-07 1.12e-06 6.75e-07 4.77e-07 7.54e-07 1.97e-06 1.34e-06 5.72e-07 2.35e-06 7.75e-07 1.06e-06 8.57e-07 1.65e-06 1.3e-06 8.13e-07 2.06e-07 3.19e-07 5.73e-07 6.11e-07 5.08e-07 7.19e-07 2.87e-07 5.07e-07 2.8e-07 3.53e-07 2.09e-06 2.33e-07 1.06e-07 2.84e-07 2.14e-07 2.46e-07 4.88e-08 1.85e-07
ENSG00000178922 HYI 142499 3e-06 2.78e-06 3.66e-07 1.97e-06 6.17e-07 7.11e-07 2.43e-06 7.56e-07 2.08e-06 1.17e-06 2.77e-06 1.39e-06 4.01e-06 1.44e-06 9.11e-07 1.77e-06 1.55e-06 2.25e-06 1.29e-06 1.33e-06 1.39e-06 3.18e-06 2.69e-06 1.21e-06 4.08e-06 1.02e-06 1.47e-06 1.78e-06 3.09e-06 2.46e-06 1.96e-06 2.65e-07 5.76e-07 1.25e-06 1.35e-06 9.47e-07 8.21e-07 4.19e-07 1.2e-06 3.54e-07 2.4e-07 4.09e-06 6.14e-07 1.9e-07 3.01e-07 2.94e-07 8.08e-07 2.4e-07 1.89e-07
ENSG00000234694 AL139289.2 237830 1.19e-06 1.01e-06 3.18e-07 1.14e-06 3.4e-07 5.96e-07 1.55e-06 3.69e-07 1.48e-06 5.15e-07 1.89e-06 6.45e-07 2.34e-06 2.89e-07 5.62e-07 9.13e-07 8.89e-07 7.19e-07 8.48e-07 6.49e-07 7.49e-07 1.74e-06 8.89e-07 6.68e-07 2.16e-06 6.01e-07 9.41e-07 8.04e-07 1.44e-06 1.31e-06 7.05e-07 7.37e-08 2.62e-07 6.95e-07 5.9e-07 4.4e-07 5.53e-07 1.65e-07 4.26e-07 2.44e-07 3.03e-07 1.63e-06 9.42e-08 5.68e-08 1.69e-07 1.23e-07 2.35e-07 8.18e-08 1.14e-07