Genes within 1Mb (chr1:43401643:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000126091 ST3GAL3 -304181 eQTL 4.70e-09 0.227 0.0384 0.248 0.241 0.0383
ENSG00000132768 DPH2 -568357 eQTL 1.59e-02 -0.0802 0.0332 0.0 0.0 0.0383
ENSG00000142949 PTPRF -123544 eQTL 1.34e-03 0.23 0.0716 0.00188 0.0 0.0383
ENSG00000159214 CCDC24 -589716 eQTL 1.17e-04 -0.355 0.0918 0.0 0.0 0.0383
ENSG00000159479 MED8 11835 eQTL 3.41e-03 -0.0974 0.0332 0.0 0.0 0.0383
ENSG00000164010 ERMAP 584521 pQTL 8.16e-03 -0.155 0.0584 0.0 0.0 0.0394
ENSG00000177868 SVBP 584246 eQTL 2.45e-02 0.116 0.0513 0.0 0.0 0.0383
ENSG00000186409 CCDC30 938313 eQTL 1.50e-02 0.101 0.0414 0.0 0.0 0.0383
ENSG00000234694 AL139289.2 42985 eQTL 3.15e-02 -0.227 0.105 0.00141 0.0 0.0383


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000126091 ST3GAL3 -304181 1.28e-06 9.39e-07 2.88e-07 7.96e-07 2.71e-07 4.49e-07 1.15e-06 3.25e-07 1.12e-06 3.66e-07 1.35e-06 5.7e-07 1.73e-06 2.57e-07 4.49e-07 6.36e-07 7.73e-07 5.63e-07 5.29e-07 6.2e-07 4.19e-07 9.64e-07 7.76e-07 5.86e-07 1.94e-06 2.99e-07 6.19e-07 5.44e-07 1.01e-06 1.11e-06 5.2e-07 7.28e-08 1.75e-07 6.19e-07 5.39e-07 4.34e-07 4.79e-07 1.55e-07 3.5e-07 1.17e-07 2.83e-07 1.54e-06 6.12e-08 6.41e-08 1.73e-07 8.9e-08 1.91e-07 8.74e-08 7.91e-08
ENSG00000159214 CCDC24 -589716 3.27e-07 1.83e-07 7e-08 2.57e-07 1.06e-07 1.08e-07 2.74e-07 6.75e-08 1.86e-07 1.11e-07 2.04e-07 1.31e-07 2.94e-07 8.66e-08 6.12e-08 9.48e-08 5.42e-08 2.21e-07 7.76e-08 7.05e-08 1.34e-07 1.81e-07 1.86e-07 4.34e-08 2.59e-07 1.56e-07 1.25e-07 1.36e-07 1.36e-07 1.58e-07 1.27e-07 4.29e-08 4.37e-08 1.03e-07 1.27e-07 4.77e-08 6.48e-08 5.36e-08 4.82e-08 7.78e-08 4.73e-08 1.79e-07 3.25e-08 1.77e-08 5.49e-08 1.01e-08 7.26e-08 0.0 4.97e-08
ENSG00000234694 AL139289.2 42985 9.86e-06 1.08e-05 1.68e-06 6.18e-06 2.29e-06 4.92e-06 1.19e-05 2.13e-06 9.55e-06 5.49e-06 1.28e-05 5.78e-06 1.69e-05 3.63e-06 3.17e-06 6.36e-06 5.55e-06 8.03e-06 2.93e-06 2.95e-06 5.97e-06 9.62e-06 9.43e-06 3.54e-06 1.58e-05 4.43e-06 4.67e-06 4.45e-06 1.15e-05 1.1e-05 5.9e-06 1e-06 1.2e-06 3.59e-06 4.88e-06 2.8e-06 1.79e-06 2e-06 2.14e-06 1.2e-06 1.05e-06 1.36e-05 1.46e-06 2.01e-07 9.55e-07 1.83e-06 1.76e-06 7.18e-07 4.73e-07
ENSG00000274386 \N 616636 3.1e-07 1.67e-07 6.57e-08 2.54e-07 1.08e-07 8.85e-08 2.5e-07 5.84e-08 1.71e-07 1.03e-07 1.83e-07 1.23e-07 2.45e-07 8.44e-08 5.69e-08 9.11e-08 4.25e-08 2.04e-07 7.27e-08 6.16e-08 1.33e-07 1.65e-07 1.75e-07 3.67e-08 2.37e-07 1.43e-07 1.29e-07 1.17e-07 1.37e-07 1.38e-07 1.22e-07 4.93e-08 3.56e-08 9.81e-08 9.25e-08 3.57e-08 5.54e-08 5.92e-08 4.83e-08 6.79e-08 4.78e-08 1.63e-07 3.55e-08 1.7e-08 4.91e-08 9.44e-09 7.97e-08 2.16e-09 4.83e-08