Genes within 1Mb (chr1:43047889:T:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000065978 YBX1 365471 sc-eQTL 6.43e-01 0.076 0.163 0.056 PB L2
ENSG00000066135 KDM4A -602260 sc-eQTL 1.47e-01 0.329 0.225 0.056 PB L2
ENSG00000066322 ELOVL1 -320185 sc-eQTL 5.40e-01 -0.148 0.241 0.056 PB L2
ENSG00000117385 P3H1 280805 sc-eQTL 7.24e-01 0.0695 0.197 0.056 PB L2
ENSG00000117394 SLC2A1 89021 sc-eQTL 7.32e-01 -0.0796 0.232 0.056 PB L2
ENSG00000117395 EBNA1BP2 -223047 sc-eQTL 3.21e-01 -0.188 0.189 0.056 PB L2
ENSG00000117408 IPO13 -899061 sc-eQTL 1.78e-01 0.333 0.246 0.056 PB L2
ENSG00000117410 ATP6V0B -926598 sc-eQTL 2.93e-01 -0.116 0.11 0.056 PB L2
ENSG00000117411 B4GALT2 -931054 sc-eQTL 3.27e-01 -0.166 0.169 0.056 PB L2
ENSG00000126091 ST3GAL3 -657935 sc-eQTL 1.53e-01 0.334 0.233 0.056 PB L2
ENSG00000127125 PPCS 591772 sc-eQTL 1.74e-01 -0.34 0.249 0.056 PB L2
ENSG00000132768 DPH2 -922111 sc-eQTL 5.13e-01 -0.161 0.246 0.056 PB L2
ENSG00000159214 CCDC24 -943470 sc-eQTL 9.83e-04 0.779 0.23 0.056 PB L2
ENSG00000159479 MED8 -341919 sc-eQTL 4.76e-01 -0.126 0.177 0.056 PB L2
ENSG00000164008 C1orf50 280640 sc-eQTL 9.25e-01 -0.0231 0.243 0.056 PB L2
ENSG00000164010 ERMAP 230767 sc-eQTL 9.40e-01 -0.0188 0.25 0.056 PB L2
ENSG00000164011 ZNF691 201316 sc-eQTL 6.92e-01 -0.0795 0.2 0.056 PB L2
ENSG00000171960 PPIH 389466 sc-eQTL 9.65e-01 -0.00878 0.201 0.056 PB L2
ENSG00000177868 SVBP 230492 sc-eQTL 3.86e-01 0.215 0.247 0.056 PB L2
ENSG00000178922 HYI -406100 sc-eQTL 1.40e-01 -0.267 0.179 0.056 PB L2
ENSG00000186409 CCDC30 584668 sc-eQTL 7.90e-01 -0.0551 0.207 0.056 PB L2
ENSG00000198198 SZT2 -341993 sc-eQTL 7.49e-01 -0.076 0.236 0.056 PB L2
ENSG00000198815 FOXJ3 712012 sc-eQTL 4.88e-01 -0.19 0.274 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117400 MPL -289960 eQTL 0.0677 -0.0986 0.0539 0.00117 0.0 0.0486
ENSG00000142949 PTPRF -477298 eQTL 0.0155 -0.154 0.0633 0.00128 0.0 0.0486
ENSG00000186409 CCDC30 584559 eQTL 2.17e-02 -0.084 0.0366 0.0 0.0 0.0486
ENSG00000227533 SLC2A1-AS1 88840 eQTL 0.00592 0.246 0.0891 0.0 0.0 0.0486


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117411 \N -931054 2.74e-07 1.25e-07 4.48e-08 1.89e-07 9.02e-08 9.65e-08 1.42e-07 5.33e-08 1.44e-07 4.74e-08 1.6e-07 7.78e-08 1.47e-07 6.56e-08 5.91e-08 7.37e-08 3.94e-08 1.21e-07 5.75e-08 4e-08 1.04e-07 1.23e-07 1.32e-07 3.42e-08 1.4e-07 1.16e-07 1.11e-07 9.61e-08 1.05e-07 1.1e-07 9.7e-08 3.87e-08 3.35e-08 8.25e-08 8.21e-08 3.65e-08 4.99e-08 9.68e-08 6.55e-08 4.19e-08 4.51e-08 1.35e-07 4.04e-08 1.09e-08 6.38e-08 1.67e-08 1.24e-07 3.83e-09 4.94e-08
ENSG00000186409 CCDC30 584559 5.37e-07 3.11e-07 8.99e-08 3.66e-07 9.94e-08 1.26e-07 3.25e-07 6.12e-08 2.35e-07 1.5e-07 2.98e-07 1.62e-07 5.54e-07 1.01e-07 1.48e-07 1.17e-07 8.74e-08 2.93e-07 1.55e-07 7.54e-08 1.35e-07 2.24e-07 2.04e-07 5.11e-08 4.46e-07 1.76e-07 1.37e-07 1.88e-07 1.54e-07 2.26e-07 1.93e-07 6.04e-08 4.96e-08 1.18e-07 1.56e-07 5.51e-08 8.75e-08 7.1e-08 6.08e-08 3.05e-08 5.36e-08 2.74e-07 3.08e-08 1.54e-08 3.61e-08 6.98e-09 7.8e-08 0.0 4.59e-08