Genes within 1Mb (chr1:43040563:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000065978 YBX1 358145 sc-eQTL 7.54e-01 0.0502 0.16 0.056 PB L2
ENSG00000066135 KDM4A -609586 sc-eQTL 1.00e-01 0.365 0.22 0.056 PB L2
ENSG00000066322 ELOVL1 -327511 sc-eQTL 1.39e-01 -0.35 0.235 0.056 PB L2
ENSG00000117385 P3H1 273479 sc-eQTL 4.21e-01 -0.155 0.193 0.056 PB L2
ENSG00000117394 SLC2A1 81695 sc-eQTL 5.96e-01 0.121 0.227 0.056 PB L2
ENSG00000117395 EBNA1BP2 -230373 sc-eQTL 2.35e-01 -0.221 0.185 0.056 PB L2
ENSG00000117408 IPO13 -906387 sc-eQTL 8.47e-01 0.047 0.243 0.056 PB L2
ENSG00000117410 ATP6V0B -933924 sc-eQTL 9.09e-01 -0.0124 0.109 0.056 PB L2
ENSG00000117411 B4GALT2 -938380 sc-eQTL 1.13e-01 -0.262 0.164 0.056 PB L2
ENSG00000126091 ST3GAL3 -665261 sc-eQTL 1.27e-01 0.35 0.228 0.056 PB L2
ENSG00000127125 PPCS 584446 sc-eQTL 4.19e-02 -0.497 0.242 0.056 PB L2
ENSG00000132768 DPH2 -929437 sc-eQTL 5.97e-01 -0.128 0.241 0.056 PB L2
ENSG00000159214 CCDC24 -950796 sc-eQTL 2.25e-02 0.536 0.232 0.056 PB L2
ENSG00000159479 MED8 -349245 sc-eQTL 6.07e-01 -0.0897 0.174 0.056 PB L2
ENSG00000164008 C1orf50 273314 sc-eQTL 5.83e-01 -0.131 0.239 0.056 PB L2
ENSG00000164010 ERMAP 223441 sc-eQTL 9.59e-01 -0.0126 0.246 0.056 PB L2
ENSG00000164011 ZNF691 193990 sc-eQTL 5.12e-01 0.129 0.196 0.056 PB L2
ENSG00000171960 PPIH 382140 sc-eQTL 4.95e-01 -0.135 0.196 0.056 PB L2
ENSG00000177868 SVBP 223166 sc-eQTL 6.77e-01 0.102 0.243 0.056 PB L2
ENSG00000178922 HYI -413426 sc-eQTL 3.44e-01 -0.168 0.177 0.056 PB L2
ENSG00000186409 CCDC30 577342 sc-eQTL 5.22e-01 0.13 0.203 0.056 PB L2
ENSG00000198198 SZT2 -349319 sc-eQTL 5.50e-01 -0.139 0.232 0.056 PB L2
ENSG00000198815 FOXJ3 704686 sc-eQTL 2.13e-01 -0.334 0.267 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117394 SLC2A1 81387 eQTL 0.0382 0.114 0.0551 0.0 0.0 0.0559
ENSG00000142949 PTPRF -484624 eQTL 0.00117 -0.192 0.0591 0.00108 0.0 0.0559
ENSG00000186409 CCDC30 577233 eQTL 1.28e-02 -0.0852 0.0342 0.0 0.0 0.0559
ENSG00000227533 SLC2A1-AS1 81514 eQTL 8.18e-05 0.328 0.0829 0.0 0.0 0.0559


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117411 \N -938380 2.67e-07 1.3e-07 5.14e-08 1.81e-07 9.24e-08 9.91e-08 1.61e-07 5.43e-08 1.45e-07 5.67e-08 1.52e-07 1.01e-07 1.52e-07 7.13e-08 5.91e-08 7.49e-08 4.01e-08 1.4e-07 5.97e-08 4.23e-08 1.22e-07 1.24e-07 1.45e-07 2.93e-08 1.5e-07 1.26e-07 1.07e-07 9.74e-08 1.2e-07 1.05e-07 1.02e-07 3.06e-08 3.66e-08 8.23e-08 7.02e-08 3.2e-08 5.22e-08 8.93e-08 6.59e-08 3.71e-08 5.13e-08 1.33e-07 5.2e-08 1.61e-08 4.92e-08 1.84e-08 1.21e-07 1.88e-09 5.02e-08
ENSG00000142949 PTPRF -484624 8.15e-07 4.93e-07 1.02e-07 3.58e-07 9.72e-08 1.77e-07 5.2e-07 1.4e-07 4.18e-07 2.39e-07 5.73e-07 3.61e-07 6.98e-07 1.17e-07 1.71e-07 2.18e-07 2.98e-07 3.73e-07 1.89e-07 1.28e-07 1.92e-07 3.65e-07 3.3e-07 1.36e-07 6.65e-07 2.49e-07 2.52e-07 2.24e-07 3.58e-07 5.17e-07 2.6e-07 7.12e-08 5.42e-08 1.42e-07 2.82e-07 7.57e-08 1.02e-07 8.33e-08 4.55e-08 5.54e-08 5.56e-08 4.35e-07 2.75e-08 1.75e-08 1.1e-07 1.59e-08 1.1e-07 1.13e-08 5.19e-08
ENSG00000186409 CCDC30 577233 5.14e-07 2.5e-07 7.72e-08 2.54e-07 1.11e-07 1.26e-07 3.44e-07 8.17e-08 2.56e-07 1.6e-07 2.98e-07 2.09e-07 4.11e-07 8.85e-08 9.12e-08 1.39e-07 1.01e-07 2.9e-07 9.69e-08 8.1e-08 1.52e-07 2.3e-07 2.33e-07 6.52e-08 3.55e-07 2.07e-07 1.57e-07 1.61e-07 1.98e-07 2.39e-07 1.78e-07 5.46e-08 5.09e-08 1.21e-07 1.16e-07 5.05e-08 6.87e-08 5.36e-08 4.72e-08 8.34e-08 4.9e-08 2.6e-07 3.37e-08 7.24e-09 5.49e-08 8.59e-09 9.34e-08 0.0 4.74e-08
ENSG00000227533 SLC2A1-AS1 81514 5.62e-06 6.21e-06 7.72e-07 3.51e-06 1.85e-06 2.14e-06 8.88e-06 1.29e-06 4.81e-06 3.43e-06 8.17e-06 2.93e-06 1.02e-05 2.79e-06 1.18e-06 4.64e-06 3.59e-06 3.78e-06 2.23e-06 2.07e-06 3.25e-06 6.99e-06 5.31e-06 2.42e-06 9.63e-06 2.38e-06 3.09e-06 2.13e-06 6.83e-06 7.76e-06 3.28e-06 5.57e-07 8.87e-07 2.77e-06 2.35e-06 2.04e-06 1.44e-06 1.03e-06 1.37e-06 8.19e-07 1.01e-06 8.36e-06 6.89e-07 1.38e-07 7.38e-07 9.38e-07 9.03e-07 7.14e-07 6.14e-07