Genes within 1Mb (chr1:43023990:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000065978 YBX1 341572 sc-eQTL 7.14e-01 0.0763 0.208 0.052 gdT L2
ENSG00000066135 KDM4A -626159 sc-eQTL 3.24e-02 -0.567 0.263 0.052 gdT L2
ENSG00000066322 ELOVL1 -344084 sc-eQTL 2.01e-01 0.335 0.26 0.052 gdT L2
ENSG00000117385 P3H1 256906 sc-eQTL 5.67e-01 0.138 0.24 0.052 gdT L2
ENSG00000117394 SLC2A1 65122 sc-eQTL 7.33e-01 0.077 0.225 0.052 gdT L2
ENSG00000117395 EBNA1BP2 -246946 sc-eQTL 9.89e-01 -0.0036 0.263 0.052 gdT L2
ENSG00000117399 CDC20 -334991 sc-eQTL 8.15e-01 0.0416 0.177 0.052 gdT L2
ENSG00000117408 IPO13 -922960 sc-eQTL 5.23e-01 0.159 0.248 0.052 gdT L2
ENSG00000117410 ATP6V0B -950497 sc-eQTL 9.82e-01 0.00508 0.226 0.052 gdT L2
ENSG00000117411 B4GALT2 -954953 sc-eQTL 7.50e-01 -0.0744 0.233 0.052 gdT L2
ENSG00000126091 ST3GAL3 -681834 sc-eQTL 6.53e-01 0.113 0.251 0.052 gdT L2
ENSG00000127124 HIVEP3 988065 sc-eQTL 4.19e-01 0.195 0.241 0.052 gdT L2
ENSG00000127125 PPCS 567873 sc-eQTL 6.13e-01 0.128 0.253 0.052 gdT L2
ENSG00000132768 DPH2 -946010 sc-eQTL 6.30e-01 -0.119 0.247 0.052 gdT L2
ENSG00000159479 MED8 -365818 sc-eQTL 4.78e-01 0.177 0.249 0.052 gdT L2
ENSG00000164008 C1orf50 256741 sc-eQTL 4.11e-01 -0.203 0.246 0.052 gdT L2
ENSG00000164010 ERMAP 206868 sc-eQTL 7.12e-01 0.0852 0.23 0.052 gdT L2
ENSG00000164011 ZNF691 177417 sc-eQTL 8.84e-01 -0.031 0.212 0.052 gdT L2
ENSG00000171960 PPIH 365567 sc-eQTL 9.18e-01 -0.0244 0.236 0.052 gdT L2
ENSG00000177868 SVBP 206593 sc-eQTL 8.59e-01 0.0451 0.253 0.052 gdT L2
ENSG00000178922 HYI -429999 sc-eQTL 5.65e-01 -0.149 0.258 0.052 gdT L2
ENSG00000198198 SZT2 -365892 sc-eQTL 2.19e-01 0.291 0.235 0.052 gdT L2
ENSG00000198815 FOXJ3 688113 sc-eQTL 8.29e-02 0.412 0.236 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117394 SLC2A1 64814 eQTL 0.00535 -0.147 0.0528 0.0 0.0 0.0594
ENSG00000159214 CCDC24 -967369 eQTL 0.0435 0.148 0.0732 0.0 0.0 0.0594


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117408 \N -922960 2.67e-07 1.3e-07 4.98e-08 1.84e-07 9.24e-08 9.9e-08 1.53e-07 5.48e-08 1.45e-07 5.42e-08 1.57e-07 1.01e-07 1.47e-07 6.76e-08 6.12e-08 7.36e-08 4.09e-08 1.27e-07 5.97e-08 4.3e-08 1.19e-07 1.24e-07 1.44e-07 2.64e-08 1.46e-07 1.21e-07 1.07e-07 9.65e-08 1.12e-07 1.05e-07 9.7e-08 2.93e-08 3.66e-08 8e-08 7.36e-08 3.2e-08 4.99e-08 8.93e-08 6.63e-08 3.8e-08 4.69e-08 1.35e-07 5.22e-08 2.48e-08 3.84e-08 1.84e-08 1.21e-07 1.88e-09 5.01e-08
ENSG00000126091 \N -681834 3.21e-07 1.53e-07 6.57e-08 2.09e-07 1.01e-07 8.89e-08 2.16e-07 6.12e-08 1.71e-07 9.72e-08 1.61e-07 1.46e-07 2.13e-07 8e-08 5.97e-08 9.01e-08 4.25e-08 1.8e-07 7.29e-08 5.61e-08 1.18e-07 1.65e-07 1.64e-07 4.07e-08 2.02e-07 1.31e-07 1.22e-07 1.1e-07 1.32e-07 1.36e-07 1.14e-07 4.93e-08 3.65e-08 9.58e-08 3.57e-08 3.11e-08 4.06e-08 7.49e-08 6.33e-08 5.45e-08 5.36e-08 1.52e-07 3.02e-08 1.34e-08 3.34e-08 1.01e-08 7.61e-08 2.13e-09 4.67e-08
ENSG00000159214 CCDC24 -967369 2.74e-07 1.25e-07 4.91e-08 1.8e-07 9.25e-08 9.76e-08 1.49e-07 5.43e-08 1.45e-07 5.42e-08 1.62e-07 9.19e-08 1.41e-07 6.76e-08 6.04e-08 7.53e-08 3.93e-08 1.26e-07 5.75e-08 4.31e-08 1.13e-07 1.27e-07 1.39e-07 3.03e-08 1.4e-07 1.14e-07 1.07e-07 9.57e-08 1.09e-07 1.07e-07 9.64e-08 3.08e-08 3.61e-08 8.34e-08 7.66e-08 3.49e-08 5.11e-08 9.36e-08 6.37e-08 3.71e-08 5.42e-08 1.33e-07 5.2e-08 2.97e-08 4.67e-08 1.83e-08 1.22e-07 3.78e-09 5.04e-08