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Genes within 1Mb (chr1:43012304:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000065978 YBX1 329886 sc-eQTL 2.29e-01 0.199 0.165 0.052 PB L2
ENSG00000066135 KDM4A -637845 sc-eQTL 4.66e-01 0.168 0.23 0.052 PB L2
ENSG00000066322 ELOVL1 -355770 sc-eQTL 6.20e-01 -0.122 0.245 0.052 PB L2
ENSG00000117385 P3H1 245220 sc-eQTL 1.44e-01 -0.291 0.198 0.052 PB L2
ENSG00000117394 SLC2A1 53436 sc-eQTL 5.95e-01 0.125 0.235 0.052 PB L2
ENSG00000117395 EBNA1BP2 -258632 sc-eQTL 8.48e-01 -0.0368 0.192 0.052 PB L2
ENSG00000117408 IPO13 -934646 sc-eQTL 1.82e-02 0.587 0.245 0.052 PB L2
ENSG00000117410 ATP6V0B -962183 sc-eQTL 2.46e-01 -0.13 0.112 0.052 PB L2
ENSG00000117411 B4GALT2 -966639 sc-eQTL 2.92e-02 -0.371 0.168 0.052 PB L2
ENSG00000126091 ST3GAL3 -693520 sc-eQTL 7.70e-01 0.0699 0.238 0.052 PB L2
ENSG00000127124 HIVEP3 976379 sc-eQTL 3.08e-01 -0.257 0.251 0.052 PB L2
ENSG00000127125 PPCS 556187 sc-eQTL 5.69e-02 -0.482 0.25 0.052 PB L2
ENSG00000132768 DPH2 -957696 sc-eQTL 1.50e-01 0.359 0.247 0.052 PB L2
ENSG00000159214 CCDC24 -979055 sc-eQTL 2.24e-01 0.298 0.244 0.052 PB L2
ENSG00000159479 MED8 -377504 sc-eQTL 7.80e-01 0.0502 0.18 0.052 PB L2
ENSG00000164008 C1orf50 245055 sc-eQTL 9.94e-01 0.00171 0.247 0.052 PB L2
ENSG00000164010 ERMAP 195182 sc-eQTL 4.56e-01 -0.19 0.253 0.052 PB L2
ENSG00000164011 ZNF691 165731 sc-eQTL 5.61e-01 0.118 0.203 0.052 PB L2
ENSG00000171960 PPIH 353881 sc-eQTL 1.26e-01 -0.31 0.201 0.052 PB L2
ENSG00000177868 SVBP 194907 sc-eQTL 4.99e-01 -0.17 0.251 0.052 PB L2
ENSG00000178922 HYI -441685 sc-eQTL 1.92e-01 -0.239 0.182 0.052 PB L2
ENSG00000186409 CCDC30 549083 sc-eQTL 8.39e-01 0.0427 0.21 0.052 PB L2
ENSG00000198198 SZT2 -377578 sc-eQTL 1.82e-01 -0.32 0.238 0.052 PB L2
ENSG00000198815 FOXJ3 676427 sc-eQTL 3.24e-01 -0.274 0.277 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066185 ZMYND12 556051 eQTL 0.0402 -0.17 0.0828 0.0 0.0 0.0373
ENSG00000117407 ARTN -921016 pQTL 0.00488 0.178 0.063 0.00312 0.00138 0.0376
ENSG00000117408 IPO13 -934646 eQTL 0.0175 -0.0962 0.0404 0.0 0.0 0.0373
ENSG00000186409 CCDC30 548974 eQTL 1.62e-02 -0.0988 0.041 0.0 0.0 0.0373
ENSG00000227533 SLC2A1-AS1 53255 eQTL 0.046 0.2 0.1 0.0 0.0 0.0373

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117408 IPO13 -934646 2.67e-07 1.16e-07 3.54e-08 1.82e-07 8.83e-08 9.71e-08 1.42e-07 5.33e-08 1.41e-07 4.4e-08 1.62e-07 8.14e-08 1.41e-07 6.38e-08 5.84e-08 7.17e-08 4.48e-08 1.14e-07 5.19e-08 4.2e-08 1.04e-07 1.26e-07 1.32e-07 4.16e-08 1.32e-07 1.14e-07 1.11e-07 9.15e-08 1.05e-07 1.12e-07 9.91e-08 3.68e-08 2.92e-08 8.65e-08 8.82e-08 3.97e-08 4.75e-08 9.49e-08 7.58e-08 3.01e-08 4.63e-08 1.35e-07 3.91e-08 3.25e-08 6.92e-08 1.69e-08 1.26e-07 4.14e-09 4.79e-08
ENSG00000117411 \N -966639 2.64e-07 1.11e-07 3.56e-08 1.78e-07 8.83e-08 9.57e-08 1.38e-07 5.33e-08 1.4e-07 4.4e-08 1.56e-07 8.14e-08 1.33e-07 6.38e-08 5.53e-08 7.26e-08 4.48e-08 1.14e-07 5.19e-08 4.03e-08 1.04e-07 1.27e-07 1.26e-07 4.13e-08 1.32e-07 1.19e-07 1.12e-07 9.15e-08 1.03e-07 1.11e-07 9.73e-08 3.71e-08 2.91e-08 8.82e-08 8.87e-08 3.99e-08 4.63e-08 9.56e-08 7.63e-08 3.01e-08 4.76e-08 1.33e-07 3.98e-08 1.82e-08 7.26e-08 1.69e-08 1.25e-07 4.2e-09 4.79e-08
ENSG00000186409 CCDC30 548974 3.53e-07 1.76e-07 6.15e-08 2.31e-07 1.02e-07 8.37e-08 2.4e-07 5.82e-08 1.85e-07 9.72e-08 1.83e-07 1.46e-07 2.45e-07 8.15e-08 5.97e-08 9.6e-08 4.31e-08 1.91e-07 7.39e-08 5.48e-08 1.22e-07 1.7e-07 1.69e-07 4.07e-08 2.48e-07 1.31e-07 1.22e-07 1.12e-07 1.37e-07 1.39e-07 1.26e-07 3.59e-08 3.68e-08 9.58e-08 4.04e-08 2.85e-08 5.51e-08 9.03e-08 6.39e-08 4.41e-08 5.81e-08 1.79e-07 5.22e-08 1.09e-08 3.32e-08 1.71e-08 8.81e-08 1.91e-09 4.85e-08