Genes within 1Mb (chr1:42846680:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000065978 YBX1 164262 sc-eQTL 8.04e-02 0.353 0.2 0.055 gdT L2
ENSG00000066135 KDM4A -803469 sc-eQTL 1.33e-01 -0.39 0.258 0.055 gdT L2
ENSG00000066322 ELOVL1 -521394 sc-eQTL 6.42e-02 -0.47 0.252 0.055 gdT L2
ENSG00000117385 P3H1 79596 sc-eQTL 1.30e-02 -0.576 0.229 0.055 gdT L2
ENSG00000117394 SLC2A1 -112188 sc-eQTL 1.82e-01 -0.293 0.218 0.055 gdT L2
ENSG00000117395 EBNA1BP2 -424256 sc-eQTL 3.93e-01 0.219 0.256 0.055 gdT L2
ENSG00000117399 CDC20 -512301 sc-eQTL 2.41e-01 0.203 0.172 0.055 gdT L2
ENSG00000126091 ST3GAL3 -859144 sc-eQTL 5.03e-01 0.164 0.244 0.055 gdT L2
ENSG00000127124 HIVEP3 810755 sc-eQTL 6.23e-01 0.116 0.235 0.055 gdT L2
ENSG00000127125 PPCS 390563 sc-eQTL 3.58e-02 0.515 0.243 0.055 gdT L2
ENSG00000159479 MED8 -543128 sc-eQTL 1.07e-01 -0.39 0.241 0.055 gdT L2
ENSG00000164008 C1orf50 79431 sc-eQTL 6.41e-01 0.112 0.24 0.055 gdT L2
ENSG00000164010 ERMAP 29558 sc-eQTL 9.94e-01 -0.00172 0.224 0.055 gdT L2
ENSG00000164011 ZNF691 107 sc-eQTL 2.92e-03 -0.606 0.2 0.055 gdT L2
ENSG00000171960 PPIH 188257 sc-eQTL 4.93e-01 0.158 0.23 0.055 gdT L2
ENSG00000177868 SVBP 29283 sc-eQTL 7.45e-01 0.0805 0.247 0.055 gdT L2
ENSG00000178922 HYI -607309 sc-eQTL 3.12e-01 0.255 0.251 0.055 gdT L2
ENSG00000198198 SZT2 -543202 sc-eQTL 2.67e-01 -0.256 0.23 0.055 gdT L2
ENSG00000198815 FOXJ3 510803 sc-eQTL 4.15e-01 -0.189 0.232 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066185 ZMYND12 390427 eQTL 0.0436 -0.188 0.0931 0.0 0.0 0.0309
ENSG00000127125 PPCS 390563 eQTL 0.0185 -0.105 0.0444 0.0 0.0 0.0309
ENSG00000171960 PPIH 188257 eQTL 0.0614 -0.064 0.0342 0.0011 0.0 0.0309
ENSG00000177868 SVBP 29283 eQTL 0.00762 0.153 0.0572 0.00773 0.00132 0.0309
ENSG00000186409 CCDC30 383350 eQTL 4.49e-05 -0.188 0.0459 0.0 0.0 0.0309


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066056 \N -454302 2.16e-06 3.67e-06 3.08e-07 1.64e-06 6.39e-07 8.48e-07 1.31e-06 3.99e-07 1.68e-06 7.2e-07 2.02e-06 1.39e-06 3.5e-06 1.24e-06 1.47e-06 1.21e-06 1.19e-06 1.33e-06 7.85e-07 1.21e-06 7.37e-07 2.99e-06 2.16e-06 7.64e-07 3.42e-06 1.08e-06 1.19e-06 1.74e-06 1.7e-06 1.3e-06 1.21e-06 1.82e-07 2.98e-07 1.22e-06 9.17e-07 9.62e-07 7.71e-07 2.78e-07 4.12e-07 2.22e-07 3.03e-07 5.01e-06 3.78e-07 1.61e-07 3.07e-07 9.16e-07 1.7e-07 1.27e-07 8.44e-08
ENSG00000066135 \N -803469 1.26e-06 1.13e-06 3e-07 4.72e-07 3.5e-07 5.88e-07 1.09e-06 2.07e-07 1.11e-06 2.81e-07 1.35e-06 5.83e-07 2.23e-06 3.41e-07 3.28e-07 6.36e-07 7.74e-07 5.68e-07 5.34e-07 4.32e-07 2.57e-07 1.56e-06 8.52e-07 2.92e-07 2.06e-06 2.44e-07 6.3e-07 5.27e-07 8.56e-07 8.51e-07 5.67e-07 5.3e-08 5.39e-08 6.83e-07 3.92e-07 4.42e-07 2.98e-07 7.53e-08 6.29e-08 1.58e-08 4.4e-08 2.12e-06 5.04e-08 1.38e-07 8.24e-08 3.36e-07 7e-08 1.24e-08 4.66e-08
ENSG00000198815 \N 510803 1.58e-06 2.6e-06 2.74e-07 1.33e-06 4.76e-07 7.82e-07 1.24e-06 3.57e-07 1.73e-06 7.11e-07 1.89e-06 1.29e-06 3.44e-06 1.4e-06 1.14e-06 1.04e-06 9.46e-07 1.1e-06 5.52e-07 7.62e-07 6.61e-07 2.32e-06 1.65e-06 5.47e-07 2.59e-06 8.03e-07 1e-06 1.12e-06 1.79e-06 1.25e-06 7.32e-07 3.87e-08 2.56e-07 1.16e-06 8.33e-07 9.57e-07 6.85e-07 1.68e-07 2.92e-07 2.99e-07 2.99e-07 3.95e-06 5.78e-07 1.84e-07 1.74e-07 3.94e-07 1.37e-07 3.68e-08 5.02e-08
ENSG00000229431 \N -538433 1.43e-06 2.52e-06 2.29e-07 1.27e-06 4.98e-07 7.21e-07 1.32e-06 3.54e-07 1.73e-06 6.61e-07 2.01e-06 1.3e-06 3.23e-06 1.35e-06 1e-06 9.68e-07 1.12e-06 1.12e-06 5.59e-07 5.67e-07 7.67e-07 2.02e-06 1.58e-06 5.43e-07 2.5e-06 7.38e-07 1.02e-06 1.07e-06 1.66e-06 1.34e-06 7.35e-07 4.5e-08 2.02e-07 8.98e-07 6.88e-07 8.48e-07 7.32e-07 1.46e-07 1.94e-07 3.1e-07 2.71e-07 3.96e-06 5.37e-07 1.62e-07 1.81e-07 3.22e-07 1.23e-07 8.48e-08 5.55e-08