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Genes within 1Mb (chr1:42835720:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000065978 YBX1 153302 sc-eQTL 9.82e-01 -0.00426 0.184 0.051 B_Activated L2
ENSG00000066135 KDM4A -814429 sc-eQTL 7.99e-01 0.0601 0.236 0.051 B_Activated L2
ENSG00000066322 ELOVL1 -532354 sc-eQTL 8.47e-01 -0.047 0.244 0.051 B_Activated L2
ENSG00000117385 P3H1 68636 sc-eQTL 7.63e-01 -0.0697 0.231 0.051 B_Activated L2
ENSG00000117394 SLC2A1 -123148 sc-eQTL 1.58e-01 -0.342 0.241 0.051 B_Activated L2
ENSG00000117395 EBNA1BP2 -435216 sc-eQTL 2.95e-01 0.256 0.244 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 -870104 sc-eQTL 7.26e-01 -0.0776 0.221 0.051 B_Activated L2
ENSG00000127124 HIVEP3 799795 sc-eQTL 3.96e-01 -0.199 0.233 0.051 B_Activated L2
ENSG00000127125 PPCS 379603 sc-eQTL 7.46e-02 -0.393 0.219 0.051 B_Activated L2
ENSG00000159479 MED8 -554088 sc-eQTL 3.22e-01 -0.227 0.229 0.051 B_Activated L2
ENSG00000164008 C1orf50 68471 sc-eQTL 7.40e-01 -0.0752 0.226 0.051 B_Activated L2
ENSG00000164010 ERMAP 18598 sc-eQTL 2.79e-01 0.208 0.192 0.051 B_Activated L2
ENSG00000164011 ZNF691 -10853 sc-eQTL 8.72e-01 -0.0292 0.182 0.051 B_Activated L2
ENSG00000171960 PPIH 177297 sc-eQTL 7.00e-01 0.0908 0.235 0.051 B_Activated L2
ENSG00000177868 SVBP 18323 sc-eQTL 3.01e-01 -0.245 0.236 0.051 B_Activated L2
ENSG00000178922 HYI -618269 sc-eQTL 1.63e-01 -0.313 0.223 0.051 B_Activated L2
ENSG00000186409 CCDC30 372499 sc-eQTL 8.07e-01 -0.0447 0.183 0.051 B_Activated L2
ENSG00000198198 SZT2 -554162 sc-eQTL 8.34e-01 -0.0458 0.218 0.051 B_Activated L2
ENSG00000198815 FOXJ3 499843 sc-eQTL 6.38e-02 -0.435 0.233 0.051 B_Activated L2
ENSG00000065978 YBX1 153302 sc-eQTL 5.99e-01 -0.0998 0.189 0.05 CD8_TEM L2
ENSG00000066135 KDM4A -814429 sc-eQTL 3.75e-01 0.2 0.225 0.05 CD8_TEM L2
ENSG00000066322 ELOVL1 -532354 sc-eQTL 5.29e-01 -0.133 0.211 0.05 CD8_TEM L2
ENSG00000117385 P3H1 68636 sc-eQTL 2.60e-01 -0.262 0.231 0.05 CD8_TEM L2
ENSG00000117394 SLC2A1 -123148 sc-eQTL 3.93e-01 0.196 0.229 0.05 CD8_TEM L2
ENSG00000117395 EBNA1BP2 -435216 sc-eQTL 9.17e-01 -0.0225 0.216 0.05 CD8_TEM L2
ENSG00000126091 ST3GAL3 -870104 sc-eQTL 7.35e-01 -0.0732 0.216 0.05 CD8_TEM L2
ENSG00000127124 HIVEP3 799795 sc-eQTL 8.25e-01 0.0485 0.219 0.05 CD8_TEM L2
ENSG00000127125 PPCS 379603 sc-eQTL 2.83e-01 -0.23 0.213 0.05 CD8_TEM L2
ENSG00000159479 MED8 -554088 sc-eQTL 8.38e-01 -0.0434 0.212 0.05 CD8_TEM L2
ENSG00000164008 C1orf50 68471 sc-eQTL 1.17e-01 0.353 0.224 0.05 CD8_TEM L2
ENSG00000164010 ERMAP 18598 sc-eQTL 4.44e-01 -0.159 0.207 0.05 CD8_TEM L2
ENSG00000164011 ZNF691 -10853 sc-eQTL 3.01e-01 -0.204 0.196 0.05 CD8_TEM L2
ENSG00000171960 PPIH 177297 sc-eQTL 9.99e-01 0.000208 0.229 0.05 CD8_TEM L2
ENSG00000177868 SVBP 18323 sc-eQTL 7.89e-01 0.0577 0.215 0.05 CD8_TEM L2
ENSG00000178922 HYI -618269 sc-eQTL 2.20e-01 -0.264 0.215 0.05 CD8_TEM L2
ENSG00000186409 CCDC30 372499 sc-eQTL 8.44e-01 -0.0377 0.192 0.05 CD8_TEM L2
ENSG00000198198 SZT2 -554162 sc-eQTL 7.29e-01 -0.0775 0.223 0.05 CD8_TEM L2
ENSG00000198815 FOXJ3 499843 sc-eQTL 6.85e-01 -0.0867 0.214 0.05 CD8_TEM L2
ENSG00000065978 YBX1 153302 sc-eQTL 1.67e-01 0.229 0.165 0.059 PB L2
ENSG00000066135 KDM4A -814429 sc-eQTL 7.52e-01 0.0733 0.231 0.059 PB L2
ENSG00000066322 ELOVL1 -532354 sc-eQTL 1.83e-01 0.327 0.244 0.059 PB L2
ENSG00000117385 P3H1 68636 sc-eQTL 4.23e-01 0.161 0.2 0.059 PB L2
ENSG00000117394 SLC2A1 -123148 sc-eQTL 7.88e-02 -0.413 0.233 0.059 PB L2
ENSG00000117395 EBNA1BP2 -435216 sc-eQTL 9.87e-01 0.00318 0.193 0.059 PB L2
ENSG00000126091 ST3GAL3 -870104 sc-eQTL 1.38e-01 -0.354 0.237 0.059 PB L2
ENSG00000127124 HIVEP3 799795 sc-eQTL 8.25e-01 0.056 0.253 0.059 PB L2
ENSG00000127125 PPCS 379603 sc-eQTL 4.59e-01 -0.189 0.255 0.059 PB L2
ENSG00000159479 MED8 -554088 sc-eQTL 3.21e-01 -0.179 0.18 0.059 PB L2
ENSG00000164008 C1orf50 68471 sc-eQTL 1.81e-01 0.331 0.246 0.059 PB L2
ENSG00000164010 ERMAP 18598 sc-eQTL 8.17e-01 -0.059 0.255 0.059 PB L2
ENSG00000164011 ZNF691 -10853 sc-eQTL 5.96e-01 -0.108 0.204 0.059 PB L2
ENSG00000171960 PPIH 177297 sc-eQTL 7.33e-01 0.0698 0.204 0.059 PB L2
ENSG00000177868 SVBP 18323 sc-eQTL 1.33e-01 -0.379 0.25 0.059 PB L2
ENSG00000178922 HYI -618269 sc-eQTL 8.60e-03 -0.478 0.179 0.059 PB L2
ENSG00000186409 CCDC30 372499 sc-eQTL 6.44e-01 -0.0976 0.211 0.059 PB L2
ENSG00000198198 SZT2 -554162 sc-eQTL 2.80e-01 -0.26 0.24 0.059 PB L2
ENSG00000198815 FOXJ3 499843 sc-eQTL 1.98e-01 0.359 0.277 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000164010 ERMAP 18598 eQTL 3.09e-02 -0.102 0.0471 0.00131 0.0 0.0358
ENSG00000171960 PPIH 177297 eQTL 0.088 0.0526 0.0308 0.00101 0.0 0.0358

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina