Genes within 1Mb (chr1:42830631:C:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000065978 YBX1 148213 sc-eQTL 1.70e-01 0.272 0.197 0.055 gdT L2
ENSG00000066135 KDM4A -819518 sc-eQTL 1.16e-01 -0.399 0.252 0.055 gdT L2
ENSG00000066322 ELOVL1 -537443 sc-eQTL 6.99e-02 -0.451 0.247 0.055 gdT L2
ENSG00000117385 P3H1 63547 sc-eQTL 2.74e-02 -0.501 0.225 0.055 gdT L2
ENSG00000117394 SLC2A1 -128237 sc-eQTL 1.27e-01 -0.328 0.213 0.055 gdT L2
ENSG00000117395 EBNA1BP2 -440305 sc-eQTL 4.86e-01 0.175 0.25 0.055 gdT L2
ENSG00000117399 CDC20 -528350 sc-eQTL 3.93e-01 0.145 0.169 0.055 gdT L2
ENSG00000126091 ST3GAL3 -875193 sc-eQTL 2.90e-01 0.253 0.238 0.055 gdT L2
ENSG00000127124 HIVEP3 794706 sc-eQTL 5.34e-01 0.143 0.23 0.055 gdT L2
ENSG00000127125 PPCS 374514 sc-eQTL 1.53e-02 0.58 0.236 0.055 gdT L2
ENSG00000159479 MED8 -559177 sc-eQTL 9.60e-02 -0.394 0.235 0.055 gdT L2
ENSG00000164008 C1orf50 63382 sc-eQTL 7.75e-01 -0.0673 0.235 0.055 gdT L2
ENSG00000164010 ERMAP 13509 sc-eQTL 9.41e-01 -0.0162 0.22 0.055 gdT L2
ENSG00000164011 ZNF691 -15942 sc-eQTL 1.15e-03 -0.646 0.195 0.055 gdT L2
ENSG00000171960 PPIH 172208 sc-eQTL 8.51e-01 0.0424 0.225 0.055 gdT L2
ENSG00000177868 SVBP 13234 sc-eQTL 4.78e-01 0.171 0.241 0.055 gdT L2
ENSG00000178922 HYI -623358 sc-eQTL 4.19e-01 0.199 0.246 0.055 gdT L2
ENSG00000198198 SZT2 -559251 sc-eQTL 6.04e-01 -0.117 0.225 0.055 gdT L2
ENSG00000198815 FOXJ3 494754 sc-eQTL 7.43e-01 -0.0748 0.227 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000127125 PPCS 374514 eQTL 0.00852 -0.116 0.044 0.0 0.0 0.0324
ENSG00000159479 MED8 -559177 eQTL 0.00548 0.102 0.0367 0.0 0.0 0.0324
ENSG00000171960 PPIH 172208 eQTL 0.0708 -0.0614 0.0339 0.00102 0.0 0.0324
ENSG00000177868 SVBP 13234 eQTL 0.0167 0.136 0.0568 0.00468 0.0 0.0324
ENSG00000186409 CCDC30 367301 eQTL 1.88e-05 -0.196 0.0455 0.0 0.0 0.0324
ENSG00000198198 SZT2 -559251 eQTL 0.0499 0.0666 0.0339 0.0 0.0 0.0324
ENSG00000229431 AL139289.1 -554482 eQTL 0.00432 0.31 0.108 0.00161 0.0 0.0324


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066056 \N -470351 7.57e-07 4e-07 7e-08 2.87e-07 1.1e-07 1.28e-07 3.57e-07 7.56e-08 2.35e-07 1.21e-07 3.66e-07 1.91e-07 4.11e-07 8.26e-08 1.01e-07 1.17e-07 8.64e-08 2.9e-07 9.97e-08 8.69e-08 1.39e-07 2.45e-07 2.11e-07 7.36e-08 3.7e-07 2.01e-07 1.48e-07 1.61e-07 1.54e-07 2.39e-07 1.78e-07 4.58e-08 5.09e-08 1.03e-07 1.07e-07 4.95e-08 1e-07 7.61e-08 4.82e-08 7.9e-08 4.46e-08 3.73e-07 2.94e-08 1.88e-08 5.4e-08 6.68e-09 7.97e-08 2.13e-09 4.52e-08
ENSG00000066135 \N -819518 2.67e-07 1.27e-07 3.72e-08 1.81e-07 9.01e-08 9.65e-08 1.49e-07 5.2e-08 1.44e-07 4.57e-08 1.54e-07 8.59e-08 1.41e-07 6.56e-08 6.17e-08 7.3e-08 3.98e-08 1.26e-07 5.75e-08 4.45e-08 1.04e-07 1.28e-07 1.34e-07 3.23e-08 1.4e-07 1.14e-07 1.06e-07 9.57e-08 1.05e-07 1.07e-07 9.64e-08 3.7e-08 3.16e-08 8.44e-08 8.74e-08 3.93e-08 5.45e-08 9.68e-08 6.54e-08 4.02e-08 4.36e-08 1.46e-07 5.24e-08 1.22e-08 5.7e-08 1.67e-08 1.22e-07 3.99e-09 4.94e-08
ENSG00000229431 AL139289.1 -554482 4.37e-07 2.4e-07 5.93e-08 2.35e-07 1.03e-07 8.89e-08 2.5e-07 5.82e-08 1.75e-07 9.35e-08 2.07e-07 1.31e-07 2.38e-07 8.07e-08 6.12e-08 9.11e-08 4.25e-08 2.04e-07 7.27e-08 5.87e-08 1.22e-07 1.81e-07 1.68e-07 4.27e-08 2.28e-07 1.56e-07 1.22e-07 1.26e-07 1.32e-07 1.38e-07 1.22e-07 3.72e-08 3.65e-08 9.3e-08 3.97e-08 2.74e-08 5.71e-08 8.63e-08 6.33e-08 6.07e-08 6.28e-08 2.5e-07 3.02e-08 1.98e-08 3.36e-08 1.8e-08 1.15e-07 1.91e-09 4.83e-08
ENSG00000234694 \N -528027 5.37e-07 2.56e-07 6.26e-08 2.41e-07 9.94e-08 8.4e-08 2.74e-07 6.12e-08 1.89e-07 1.03e-07 2.38e-07 1.48e-07 2.94e-07 8.44e-08 6.53e-08 9.35e-08 5.42e-08 2.21e-07 7.53e-08 5.61e-08 1.26e-07 1.98e-07 1.73e-07 3.41e-08 2.48e-07 1.71e-07 1.31e-07 1.36e-07 1.39e-07 1.69e-07 1.35e-07 3.68e-08 3.8e-08 1.02e-07 5.24e-08 3.24e-08 6.67e-08 9.03e-08 5.95e-08 6.67e-08 4.42e-08 2.65e-07 3.59e-08 2.09e-08 3.3e-08 1.71e-08 9.29e-08 1.95e-09 4.97e-08