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Genes within 1Mb (chr1:42103727:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 861573 sc-eQTL 4.81e-01 0.146 0.207 0.05 CD8_TEM L2
ENSG00000065978 YBX1 -578691 sc-eQTL 3.92e-01 -0.149 0.174 0.05 CD8_TEM L2
ENSG00000117385 P3H1 -663357 sc-eQTL 4.57e-01 0.159 0.213 0.05 CD8_TEM L2
ENSG00000117394 SLC2A1 -855141 sc-eQTL 4.60e-01 -0.156 0.211 0.05 CD8_TEM L2
ENSG00000127124 HIVEP3 67802 sc-eQTL 4.62e-01 -0.148 0.201 0.05 CD8_TEM L2
ENSG00000127125 PPCS -352390 sc-eQTL 7.38e-01 -0.0658 0.196 0.05 CD8_TEM L2
ENSG00000164008 C1orf50 -663522 sc-eQTL 6.54e-01 -0.093 0.207 0.05 CD8_TEM L2
ENSG00000164010 ERMAP -713395 sc-eQTL 6.04e-01 0.0992 0.191 0.05 CD8_TEM L2
ENSG00000164011 ZNF691 -742846 sc-eQTL 5.62e-01 -0.105 0.181 0.05 CD8_TEM L2
ENSG00000171960 PPIH -554696 sc-eQTL 1.33e-01 0.315 0.209 0.05 CD8_TEM L2
ENSG00000177868 SVBP -713670 sc-eQTL 3.91e-01 -0.169 0.197 0.05 CD8_TEM L2
ENSG00000186409 CCDC30 -359494 sc-eQTL 4.43e-01 -0.135 0.176 0.05 CD8_TEM L2
ENSG00000198815 FOXJ3 -232150 sc-eQTL 2.99e-01 -0.204 0.196 0.05 CD8_TEM L2
ENSG00000010803 SCMH1 861573 sc-eQTL 8.33e-01 0.0426 0.202 0.05 NK_HLA L2
ENSG00000065978 YBX1 -578691 sc-eQTL 9.66e-01 -0.00716 0.167 0.05 NK_HLA L2
ENSG00000117385 P3H1 -663357 sc-eQTL 3.95e-01 0.18 0.212 0.05 NK_HLA L2
ENSG00000117394 SLC2A1 -855141 sc-eQTL 1.99e-01 -0.241 0.187 0.05 NK_HLA L2
ENSG00000127124 HIVEP3 67802 sc-eQTL 6.18e-01 0.104 0.209 0.05 NK_HLA L2
ENSG00000127125 PPCS -352390 sc-eQTL 3.39e-01 -0.193 0.201 0.05 NK_HLA L2
ENSG00000164008 C1orf50 -663522 sc-eQTL 2.78e-01 0.237 0.218 0.05 NK_HLA L2
ENSG00000164010 ERMAP -713395 sc-eQTL 5.65e-02 -0.38 0.198 0.05 NK_HLA L2
ENSG00000164011 ZNF691 -742846 sc-eQTL 8.03e-01 -0.0469 0.188 0.05 NK_HLA L2
ENSG00000171960 PPIH -554696 sc-eQTL 4.51e-01 0.157 0.208 0.05 NK_HLA L2
ENSG00000177868 SVBP -713670 sc-eQTL 7.06e-01 0.074 0.196 0.05 NK_HLA L2
ENSG00000186409 CCDC30 -359494 sc-eQTL 7.63e-01 0.0556 0.185 0.05 NK_HLA L2
ENSG00000198815 FOXJ3 -232150 sc-eQTL 1.35e-01 -0.298 0.198 0.05 NK_HLA L2
ENSG00000010803 SCMH1 861573 sc-eQTL 5.17e-01 -0.138 0.212 0.058 gdT L2
ENSG00000065978 YBX1 -578691 sc-eQTL 1.74e-01 -0.245 0.179 0.058 gdT L2
ENSG00000117385 P3H1 -663357 sc-eQTL 9.85e-01 0.00392 0.208 0.058 gdT L2
ENSG00000117394 SLC2A1 -855141 sc-eQTL 1.86e-01 -0.258 0.194 0.058 gdT L2
ENSG00000127124 HIVEP3 67802 sc-eQTL 8.93e-01 0.0281 0.209 0.058 gdT L2
ENSG00000127125 PPCS -352390 sc-eQTL 2.30e-01 -0.263 0.219 0.058 gdT L2
ENSG00000164008 C1orf50 -663522 sc-eQTL 7.28e-01 0.0745 0.214 0.058 gdT L2
ENSG00000164010 ERMAP -713395 sc-eQTL 7.36e-01 -0.0675 0.2 0.058 gdT L2
ENSG00000164011 ZNF691 -742846 sc-eQTL 9.11e-01 0.0205 0.184 0.058 gdT L2
ENSG00000171960 PPIH -554696 sc-eQTL 2.55e-01 0.234 0.204 0.058 gdT L2
ENSG00000177868 SVBP -713670 sc-eQTL 9.27e-01 0.0202 0.22 0.058 gdT L2
ENSG00000198815 FOXJ3 -232150 sc-eQTL 2.57e-01 0.234 0.206 0.058 gdT L2
ENSG00000010803 SCMH1 861573 sc-eQTL 4.38e-01 0.149 0.192 0.054 pDC L2
ENSG00000065978 YBX1 -578691 sc-eQTL 9.08e-01 0.0164 0.142 0.054 pDC L2
ENSG00000117385 P3H1 -663357 sc-eQTL 5.98e-02 -0.428 0.226 0.054 pDC L2
ENSG00000117394 SLC2A1 -855141 sc-eQTL 5.89e-01 -0.0791 0.146 0.054 pDC L2
ENSG00000127124 HIVEP3 67802 sc-eQTL 5.95e-01 -0.113 0.213 0.054 pDC L2
ENSG00000127125 PPCS -352390 sc-eQTL 2.45e-01 0.236 0.202 0.054 pDC L2
ENSG00000164008 C1orf50 -663522 sc-eQTL 1.94e-01 -0.28 0.215 0.054 pDC L2
ENSG00000164010 ERMAP -713395 sc-eQTL 1.77e-01 0.274 0.202 0.054 pDC L2
ENSG00000164011 ZNF691 -742846 sc-eQTL 5.80e-01 0.095 0.171 0.054 pDC L2
ENSG00000171960 PPIH -554696 sc-eQTL 2.54e-01 0.232 0.203 0.054 pDC L2
ENSG00000177868 SVBP -713670 sc-eQTL 5.94e-01 0.112 0.21 0.054 pDC L2
ENSG00000186409 CCDC30 -359494 sc-eQTL 8.20e-01 -0.0408 0.179 0.054 pDC L2
ENSG00000198815 FOXJ3 -232150 sc-eQTL 8.85e-02 -0.397 0.231 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066185 ZMYND12 -352526 eQTL 0.0487 -0.187 0.095 0.0 0.0 0.0309
ENSG00000117385 P3H1 -663357 eQTL 0.0492 -0.0948 0.0481 0.0 0.0 0.0309
ENSG00000127125 PPCS -352390 eQTL 0.0265 -0.101 0.0453 0.0 0.0 0.0309

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000065978 \N -578691 6.8e-07 3.12e-07 9.49e-08 2.57e-07 1.07e-07 1.57e-07 3.94e-07 8.86e-08 2.76e-07 1.78e-07 3.32e-07 3.08e-07 4.34e-07 9.48e-08 1.45e-07 1.53e-07 1.38e-07 3.02e-07 1.5e-07 9.01e-08 1.61e-07 2.63e-07 2.48e-07 1.04e-07 4.11e-07 2.13e-07 1.97e-07 1.85e-07 2.13e-07 3.3e-07 1.86e-07 7.5e-08 5.55e-08 1.24e-07 2.15e-07 6.23e-08 6.95e-08 7.62e-08 5.77e-08 6.07e-08 5.23e-08 2.65e-07 2.71e-08 7.21e-09 9.64e-08 1.78e-08 8.01e-08 1.15e-08 5.54e-08
ENSG00000066185 ZMYND12 -352526 1.27e-06 9.19e-07 3.27e-07 3.89e-07 2.66e-07 4.59e-07 1.08e-06 3.28e-07 1.11e-06 3.78e-07 1.36e-06 5.79e-07 1.58e-06 2.68e-07 4.31e-07 6.94e-07 8.26e-07 5.66e-07 5.29e-07 6.68e-07 3.91e-07 1.08e-06 7.79e-07 5.79e-07 1.85e-06 3.17e-07 6.7e-07 5.78e-07 9.65e-07 1.11e-06 5.43e-07 1.59e-07 2.27e-07 4.57e-07 4.2e-07 4.15e-07 3.62e-07 1.47e-07 2.21e-07 9.07e-08 3e-07 1.26e-06 5.81e-08 1.22e-08 2.01e-07 1.11e-07 2.37e-07 7.74e-08 9.51e-08
ENSG00000117385 P3H1 -663357 4.37e-07 1.92e-07 7.76e-08 2.28e-07 1.07e-07 1.28e-07 2.86e-07 7.12e-08 2.01e-07 1.28e-07 2.18e-07 1.96e-07 3.04e-07 8.54e-08 9.2e-08 1.1e-07 7.3e-08 2.43e-07 8.68e-08 8.31e-08 1.34e-07 2.09e-07 1.86e-07 4.34e-08 2.59e-07 1.76e-07 1.39e-07 1.48e-07 1.48e-07 1.89e-07 1.35e-07 6.78e-08 4.76e-08 1.03e-07 9.25e-08 4.86e-08 6.24e-08 5.36e-08 4.83e-08 8.2e-08 3.6e-08 1.63e-07 3.19e-08 1.09e-08 5.84e-08 8.42e-09 9.25e-08 2.89e-09 4.52e-08
ENSG00000164008 \N -663522 4.37e-07 1.92e-07 7.6e-08 2.28e-07 1.07e-07 1.28e-07 2.86e-07 7.12e-08 2.01e-07 1.28e-07 2.18e-07 1.96e-07 3.04e-07 8.54e-08 9.2e-08 1.1e-07 7.3e-08 2.43e-07 8.68e-08 8.31e-08 1.34e-07 2.09e-07 1.86e-07 4.34e-08 2.59e-07 1.76e-07 1.39e-07 1.48e-07 1.44e-07 1.89e-07 1.35e-07 6.78e-08 4.76e-08 1.03e-07 9.25e-08 4.86e-08 6.24e-08 5.36e-08 4.83e-08 8.2e-08 3.6e-08 1.63e-07 3.19e-08 1.09e-08 5.84e-08 8.42e-09 9.25e-08 2.89e-09 4.52e-08
ENSG00000186409 \N -359603 1.34e-06 9.48e-07 3.08e-07 3.77e-07 2.58e-07 4.63e-07 1.02e-06 3.24e-07 1.13e-06 3.66e-07 1.26e-06 5.93e-07 1.53e-06 2.57e-07 4.26e-07 6.57e-07 7.74e-07 5.48e-07 4.95e-07 6.39e-07 3.8e-07 9.92e-07 7.15e-07 5.4e-07 1.79e-06 2.99e-07 6.53e-07 5.61e-07 9.15e-07 1.08e-06 5.1e-07 1.55e-07 2.31e-07 4.16e-07 3.98e-07 3.94e-07 3.64e-07 1.26e-07 1.96e-07 8.82e-08 2.83e-07 1.23e-06 6.65e-08 5.96e-09 1.86e-07 9.94e-08 2.41e-07 8.42e-08 8.44e-08