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Genes within 1Mb (chr1:41659747:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 417593 sc-eQTL 1.22e-01 -0.35 0.226 0.053 CD8_TCM L2
ENSG00000066136 NFYC 968099 sc-eQTL 8.07e-01 0.0554 0.227 0.053 CD8_TCM L2
ENSG00000127124 HIVEP3 -376178 sc-eQTL 2.24e-01 -0.26 0.213 0.053 CD8_TCM L2
ENSG00000127125 PPCS -796370 sc-eQTL 8.64e-01 -0.0366 0.214 0.053 CD8_TCM L2
ENSG00000171793 CTPS1 680059 sc-eQTL 8.01e-01 0.0497 0.197 0.053 CD8_TCM L2
ENSG00000171960 PPIH -998676 sc-eQTL 5.55e-01 0.126 0.213 0.053 CD8_TCM L2
ENSG00000179862 CITED4 797384 sc-eQTL 4.01e-01 0.141 0.167 0.053 CD8_TCM L2
ENSG00000186409 CCDC30 -803474 sc-eQTL 3.79e-01 0.184 0.209 0.053 CD8_TCM L2
ENSG00000198815 FOXJ3 -676130 sc-eQTL 2.76e-02 -0.439 0.198 0.053 CD8_TCM L2
ENSG00000272145 NFYC-AS1 967681 sc-eQTL 4.78e-02 -0.407 0.205 0.053 CD8_TCM L2
ENSG00000010803 SCMH1 417593 sc-eQTL 3.34e-01 -0.196 0.203 0.051 NK_CD56bright L2
ENSG00000066136 NFYC 968099 sc-eQTL 9.98e-01 0.000501 0.222 0.051 NK_CD56bright L2
ENSG00000127124 HIVEP3 -376178 sc-eQTL 7.45e-01 -0.0663 0.204 0.051 NK_CD56bright L2
ENSG00000127125 PPCS -796370 sc-eQTL 8.61e-01 -0.037 0.212 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 680059 sc-eQTL 1.00e+00 -4.5e-05 0.185 0.051 NK_CD56bright L2
ENSG00000171960 PPIH -998676 sc-eQTL 1.74e-01 0.283 0.208 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 797384 sc-eQTL 6.16e-01 -0.097 0.193 0.051 NK_CD56bright L2
ENSG00000186409 CCDC30 -803474 sc-eQTL 3.31e-01 -0.186 0.191 0.051 NK_CD56bright L2
ENSG00000198815 FOXJ3 -676130 sc-eQTL 2.13e-01 -0.242 0.194 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 967681 sc-eQTL 1.59e-01 -0.287 0.203 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 417593 sc-eQTL 3.73e-01 0.264 0.296 0.052 PB L2
ENSG00000066136 NFYC 968099 sc-eQTL 7.68e-01 -0.0754 0.254 0.052 PB L2
ENSG00000127124 HIVEP3 -376178 sc-eQTL 2.95e-01 -0.274 0.26 0.052 PB L2
ENSG00000127125 PPCS -796370 sc-eQTL 7.82e-01 -0.0732 0.264 0.052 PB L2
ENSG00000171793 CTPS1 680059 sc-eQTL 4.85e-01 -0.18 0.258 0.052 PB L2
ENSG00000171960 PPIH -998676 sc-eQTL 3.06e-01 0.216 0.21 0.052 PB L2
ENSG00000179862 CITED4 797384 sc-eQTL 9.92e-01 -0.00235 0.229 0.052 PB L2
ENSG00000186409 CCDC30 -803474 sc-eQTL 4.60e-01 -0.161 0.218 0.052 PB L2
ENSG00000198815 FOXJ3 -676130 sc-eQTL 3.79e-02 -0.595 0.283 0.052 PB L2
ENSG00000272145 NFYC-AS1 967681 sc-eQTL 1.49e-01 0.345 0.238 0.052 PB L2
ENSG00000010803 SCMH1 417593 sc-eQTL 7.97e-02 0.357 0.203 0.05 Pro_T L2
ENSG00000066136 NFYC 968099 sc-eQTL 3.94e-01 -0.167 0.196 0.05 Pro_T L2
ENSG00000127124 HIVEP3 -376178 sc-eQTL 6.74e-02 -0.319 0.173 0.05 Pro_T L2
ENSG00000127125 PPCS -796370 sc-eQTL 3.30e-01 -0.212 0.218 0.05 Pro_T L2
ENSG00000171793 CTPS1 680059 sc-eQTL 4.56e-01 -0.143 0.191 0.05 Pro_T L2
ENSG00000171960 PPIH -998676 sc-eQTL 1.52e-01 0.235 0.163 0.05 Pro_T L2
ENSG00000179862 CITED4 797384 sc-eQTL 4.15e-01 -0.147 0.18 0.05 Pro_T L2
ENSG00000198815 FOXJ3 -676130 sc-eQTL 6.20e-01 -0.104 0.208 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 967681 sc-eQTL 7.54e-02 -0.354 0.198 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066185 ZMYND12 -796506 eQTL 0.0446 0.147 0.0729 0.0 0.0 0.0496

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000281207 \N 645157 3.62e-07 1.83e-07 6.99e-08 2.35e-07 1.03e-07 8.63e-08 2.24e-07 5.85e-08 1.71e-07 9.72e-08 1.76e-07 1.23e-07 2.38e-07 8.66e-08 5.69e-08 8.71e-08 4.25e-08 2.04e-07 7.29e-08 5.33e-08 1.26e-07 1.7e-07 1.69e-07 3.59e-08 2.28e-07 1.31e-07 1.31e-07 1.12e-07 1.31e-07 1.38e-07 1.21e-07 4.85e-08 3.13e-08 9.78e-08 3.97e-08 3.3e-08 4.06e-08 8.71e-08 6.76e-08 4.24e-08 5.45e-08 1.55e-07 3.19e-08 1.25e-08 5.32e-08 1.01e-08 7.97e-08 2.75e-09 4.68e-08