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Genes within 1Mb (chr1:41638617:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 396463 sc-eQTL 3.82e-01 -0.174 0.198 0.05 NK_HLA L2
ENSG00000066136 NFYC 946969 sc-eQTL 2.61e-01 -0.236 0.209 0.05 NK_HLA L2
ENSG00000127124 HIVEP3 -397308 sc-eQTL 8.38e-02 -0.354 0.204 0.05 NK_HLA L2
ENSG00000127125 PPCS -817500 sc-eQTL 2.34e-01 0.236 0.197 0.05 NK_HLA L2
ENSG00000171793 CTPS1 658929 sc-eQTL 5.01e-01 -0.123 0.182 0.05 NK_HLA L2
ENSG00000179862 CITED4 776254 sc-eQTL 5.17e-01 0.122 0.187 0.05 NK_HLA L2
ENSG00000186409 CCDC30 -824604 sc-eQTL 5.56e-01 0.107 0.181 0.05 NK_HLA L2
ENSG00000198815 FOXJ3 -697260 sc-eQTL 3.07e-01 0.2 0.195 0.05 NK_HLA L2
ENSG00000272145 NFYC-AS1 946551 sc-eQTL 9.93e-01 -0.00173 0.203 0.05 NK_HLA L2
ENSG00000010803 SCMH1 396463 sc-eQTL 6.89e-01 -0.0772 0.192 0.054 cDC L2
ENSG00000066136 NFYC 946969 sc-eQTL 3.76e-02 0.427 0.204 0.054 cDC L2
ENSG00000117016 RIMS3 972935 sc-eQTL 6.07e-01 -0.0707 0.137 0.054 cDC L2
ENSG00000127124 HIVEP3 -397308 sc-eQTL 9.55e-01 0.00979 0.175 0.054 cDC L2
ENSG00000127125 PPCS -817500 sc-eQTL 3.96e-01 -0.147 0.172 0.054 cDC L2
ENSG00000171793 CTPS1 658929 sc-eQTL 8.66e-02 0.319 0.185 0.054 cDC L2
ENSG00000179862 CITED4 776254 sc-eQTL 3.41e-01 0.161 0.168 0.054 cDC L2
ENSG00000186409 CCDC30 -824604 sc-eQTL 9.41e-01 0.0126 0.169 0.054 cDC L2
ENSG00000198815 FOXJ3 -697260 sc-eQTL 8.21e-01 0.0436 0.193 0.054 cDC L2
ENSG00000272145 NFYC-AS1 946551 sc-eQTL 9.75e-01 -0.00571 0.179 0.054 cDC L2
ENSG00000010803 SCMH1 396463 sc-eQTL 8.34e-01 -0.0478 0.227 0.052 gdT L2
ENSG00000066136 NFYC 946969 sc-eQTL 6.27e-01 -0.122 0.251 0.052 gdT L2
ENSG00000127124 HIVEP3 -397308 sc-eQTL 3.62e-02 -0.465 0.22 0.052 gdT L2
ENSG00000127125 PPCS -817500 sc-eQTL 4.30e-01 0.185 0.234 0.052 gdT L2
ENSG00000171793 CTPS1 658929 sc-eQTL 7.14e-01 0.0784 0.213 0.052 gdT L2
ENSG00000179862 CITED4 776254 sc-eQTL 6.27e-01 -0.107 0.219 0.052 gdT L2
ENSG00000198815 FOXJ3 -697260 sc-eQTL 6.73e-01 0.0933 0.221 0.052 gdT L2
ENSG00000272145 NFYC-AS1 946551 sc-eQTL 8.66e-01 -0.038 0.225 0.052 gdT L2
ENSG00000010803 SCMH1 396463 sc-eQTL 8.00e-01 -0.0496 0.196 0.056 pDC L2
ENSG00000066136 NFYC 946969 sc-eQTL 2.17e-01 -0.273 0.22 0.056 pDC L2
ENSG00000117016 RIMS3 972935 sc-eQTL 6.67e-01 0.0783 0.182 0.056 pDC L2
ENSG00000127124 HIVEP3 -397308 sc-eQTL 3.59e-01 -0.199 0.216 0.056 pDC L2
ENSG00000127125 PPCS -817500 sc-eQTL 1.01e-01 0.339 0.205 0.056 pDC L2
ENSG00000171793 CTPS1 658929 sc-eQTL 1.69e-01 0.242 0.175 0.056 pDC L2
ENSG00000179862 CITED4 776254 sc-eQTL 6.76e-01 -0.0735 0.176 0.056 pDC L2
ENSG00000186409 CCDC30 -824604 sc-eQTL 9.54e-01 0.0106 0.182 0.056 pDC L2
ENSG00000198815 FOXJ3 -697260 sc-eQTL 5.71e-01 0.135 0.238 0.056 pDC L2
ENSG00000272145 NFYC-AS1 946551 sc-eQTL 9.58e-01 -0.0101 0.19 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000127125 \N -817500 2.66e-07 1.08e-07 3.28e-08 1.76e-07 9.91e-08 9.13e-08 1.39e-07 5.21e-08 1.36e-07 4.23e-08 1.63e-07 7.6e-08 1.23e-07 6.07e-08 5.4e-08 7.76e-08 5.12e-08 1.07e-07 5.12e-08 3.29e-08 1.03e-07 1.31e-07 1.31e-07 4.98e-08 1.32e-07 1.09e-07 1.13e-07 8.49e-08 1.03e-07 1.1e-07 9.5e-08 3.94e-08 2.74e-08 8.3e-08 9.14e-08 3.9e-08 4.99e-08 8.78e-08 8.22e-08 3.07e-08 3.89e-08 1.4e-07 4.04e-08 0.0 6.92e-08 1.75e-08 1.37e-07 4.26e-09 4.74e-08
ENSG00000171793 \N 659282 2.67e-07 1.01e-07 3.35e-08 1.78e-07 9.65e-08 9.3e-08 1.41e-07 5.35e-08 1.42e-07 4.24e-08 1.62e-07 8.02e-08 1.26e-07 6.21e-08 5.99e-08 8.01e-08 4.94e-08 1.1e-07 5.2e-08 3.89e-08 1.06e-07 1.3e-07 1.29e-07 4.54e-08 1.31e-07 1.09e-07 1.1e-07 8.71e-08 9.88e-08 1.1e-07 9.58e-08 2.93e-08 2.91e-08 8.82e-08 8.93e-08 3.76e-08 4.79e-08 9.2e-08 8.19e-08 3.54e-08 3.35e-08 1.37e-07 5.22e-08 0.0 5.19e-08 1.7e-08 1.26e-07 3.95e-09 4.77e-08
ENSG00000272145 \N 946551 2.66e-07 1.11e-07 3.34e-08 1.68e-07 1.02e-07 9.05e-08 1.36e-07 5.24e-08 1.32e-07 4.23e-08 1.61e-07 7.49e-08 1.21e-07 6.07e-08 5.14e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.85e-08 1.03e-07 1.31e-07 1.31e-07 4.99e-08 1.33e-07 1.03e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.5e-08 3.68e-08 2.74e-08 8.02e-08 9.56e-08 4.02e-08 5.26e-08 8.75e-08 8.14e-08 3.34e-08 3.46e-08 1.42e-07 4.12e-08 0.0 7.91e-08 1.78e-08 1.44e-07 4.41e-09 4.61e-08