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Genes within 1Mb (chr1:41446467:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 204313 sc-eQTL 7.78e-01 0.0619 0.219 0.949 CD8_TCM L2
ENSG00000066136 NFYC 754819 sc-eQTL 2.26e-01 0.265 0.218 0.949 CD8_TCM L2
ENSG00000117010 ZNF684 914894 sc-eQTL 1.88e-01 -0.273 0.207 0.949 CD8_TCM L2
ENSG00000127124 HIVEP3 -589458 sc-eQTL 3.65e-01 0.187 0.206 0.949 CD8_TCM L2
ENSG00000164002 EXO5 937726 sc-eQTL 5.14e-01 -0.138 0.211 0.949 CD8_TCM L2
ENSG00000171793 CTPS1 466779 sc-eQTL 8.03e-01 -0.0475 0.19 0.949 CD8_TCM L2
ENSG00000179862 CITED4 584104 sc-eQTL 2.08e-01 -0.203 0.161 0.949 CD8_TCM L2
ENSG00000187801 ZFP69B 996365 sc-eQTL 2.09e-01 0.25 0.198 0.949 CD8_TCM L2
ENSG00000187815 ZFP69 969177 sc-eQTL 5.57e-01 0.118 0.201 0.949 CD8_TCM L2
ENSG00000198815 FOXJ3 -889410 sc-eQTL 8.90e-01 0.0267 0.193 0.949 CD8_TCM L2
ENSG00000272145 NFYC-AS1 754401 sc-eQTL 3.50e-01 -0.186 0.199 0.949 CD8_TCM L2
ENSG00000010803 SCMH1 204313 sc-eQTL 8.70e-03 -0.508 0.192 0.95 Pro_T L2
ENSG00000066136 NFYC 754819 sc-eQTL 6.24e-01 0.0918 0.187 0.95 Pro_T L2
ENSG00000117010 ZNF684 914894 sc-eQTL 6.70e-01 -0.0824 0.193 0.95 Pro_T L2
ENSG00000127124 HIVEP3 -589458 sc-eQTL 3.25e-02 -0.355 0.165 0.95 Pro_T L2
ENSG00000164002 EXO5 937726 sc-eQTL 5.93e-01 0.11 0.206 0.95 Pro_T L2
ENSG00000171793 CTPS1 466779 sc-eQTL 8.26e-01 -0.0404 0.183 0.95 Pro_T L2
ENSG00000179862 CITED4 584104 sc-eQTL 2.20e-01 0.211 0.171 0.95 Pro_T L2
ENSG00000187801 ZFP69B 996365 sc-eQTL 9.61e-01 -0.00836 0.171 0.95 Pro_T L2
ENSG00000187815 ZFP69 969177 sc-eQTL 6.09e-01 -0.0995 0.194 0.95 Pro_T L2
ENSG00000198815 FOXJ3 -889410 sc-eQTL 9.23e-01 -0.0193 0.199 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 754401 sc-eQTL 8.92e-02 0.323 0.189 0.95 Pro_T L2
ENSG00000010803 SCMH1 204313 sc-eQTL 8.27e-01 0.0442 0.202 0.949 intMono L2
ENSG00000066136 NFYC 754819 sc-eQTL 9.58e-01 -0.0112 0.211 0.949 intMono L2
ENSG00000117010 ZNF684 914894 sc-eQTL 5.32e-01 -0.123 0.196 0.949 intMono L2
ENSG00000127124 HIVEP3 -589458 sc-eQTL 2.60e-01 -0.181 0.16 0.949 intMono L2
ENSG00000171793 CTPS1 466779 sc-eQTL 8.37e-01 0.0426 0.208 0.949 intMono L2
ENSG00000179862 CITED4 584104 sc-eQTL 4.46e-01 0.131 0.171 0.949 intMono L2
ENSG00000187815 ZFP69 969177 sc-eQTL 2.94e-01 0.198 0.188 0.949 intMono L2
ENSG00000198815 FOXJ3 -889410 sc-eQTL 2.76e-01 0.229 0.21 0.949 intMono L2
ENSG00000272145 NFYC-AS1 754401 sc-eQTL 2.30e-02 -0.45 0.196 0.949 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117013 KCNQ4 662680 eQTL 3.43e-02 0.14 0.0661 0.0 0.0 0.0716
ENSG00000127129 EDN2 -38216 eQTL 0.00819 -0.142 0.0535 0.0 0.0 0.0716
ENSG00000179862 CITED4 584101 eQTL 0.00286 0.152 0.0508 0.0 0.0 0.0716
ENSG00000187801 ZFP69B 996360 eQTL 0.0263 0.113 0.0507 0.0 0.0 0.0716
ENSG00000187815 ZFP69 969177 eQTL 0.0442 -0.0793 0.0393 0.0 0.0 0.0716
ENSG00000204060 FOXO6 84545 eQTL 0.0123 0.106 0.0422 0.0 0.0 0.0716

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000127129 EDN2 -38216 1.57e-05 1.78e-05 2.53e-06 9.8e-06 2.46e-06 6.99e-06 2.27e-05 3.36e-06 1.67e-05 7.19e-06 2.01e-05 7.45e-06 2.86e-05 6.35e-06 4.47e-06 8.97e-06 8.14e-06 1.33e-05 3.74e-06 4.11e-06 6.83e-06 1.52e-05 1.4e-05 4.25e-06 2.49e-05 5.11e-06 7.62e-06 6.3e-06 1.66e-05 1.36e-05 1.05e-05 1.1e-06 1.27e-06 3.76e-06 6.8e-06 2.86e-06 1.74e-06 2.35e-06 2.22e-06 1.56e-06 9.49e-07 2.08e-05 2.52e-06 2.91e-07 1.17e-06 2.12e-06 2.04e-06 6.16e-07 4.42e-07
ENSG00000204060 FOXO6 84545 8.9e-06 9.74e-06 9.65e-07 5.17e-06 1.87e-06 4e-06 1.04e-05 1.93e-06 9.21e-06 4.27e-06 1.1e-05 5.03e-06 1.32e-05 3.92e-06 2.22e-06 5.71e-06 3.84e-06 6.32e-06 2.34e-06 2.82e-06 3.45e-06 8.06e-06 6.79e-06 2.42e-06 1.25e-05 2.92e-06 4.55e-06 3.16e-06 8.33e-06 7.86e-06 4.77e-06 7.85e-07 6.91e-07 2.75e-06 3.75e-06 1.7e-06 1.3e-06 1.32e-06 1.27e-06 9.15e-07 6.7e-07 1.19e-05 1.3e-06 1.76e-07 6.7e-07 1.01e-06 9.55e-07 6.91e-07 5.92e-07