Genes within 1Mb (chr1:41078607:G:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000010803 SCMH1 -163509 eQTL 8.57e-07 -0.0723 0.0146 0.0 0.0 0.304
ENSG00000117013 KCNQ4 294820 eQTL 4.30e-02 -0.0756 0.0373 0.0 0.0 0.304
ENSG00000127129 EDN2 -406076 eQTL 3.62e-02 -0.0634 0.0302 0.0 0.0 0.304
ENSG00000131238 PPT1 980880 pQTL 1.97e-02 0.08 0.0343 0.00174 0.0 0.316
ENSG00000131238 PPT1 980880 eQTL 6.34e-03 -0.0839 0.0307 0.0 0.0 0.304
ENSG00000164002 EXO5 569866 eQTL 5.44e-03 -0.0631 0.0226 0.0 0.0 0.304
ENSG00000171793 CTPS1 99272 eQTL 7.12e-05 -0.0787 0.0197 0.0 0.0 0.304
ENSG00000179862 CITED4 216241 eQTL 1.65e-07 0.15 0.0284 0.0 0.0 0.304
ENSG00000204060 FOXO6 -283315 eQTL 2.92e-08 -0.132 0.0235 0.0 0.0 0.304
ENSG00000238287 AL603839.3 569946 eQTL 1.86e-03 0.139 0.0447 0.0 0.0 0.304
ENSG00000281207 SLFNL1-AS1 64017 eQTL 2.55e-09 -0.157 0.026 0.0 0.0 0.304


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000010803 SCMH1 -163509 4.24e-06 4.35e-06 8.35e-07 2.41e-06 1.64e-06 1.19e-06 3.15e-06 9.99e-07 4.64e-06 2.13e-06 4.29e-06 3.37e-06 6.98e-06 1.91e-06 1.37e-06 3.22e-06 2.06e-06 2.94e-06 1.48e-06 1.02e-06 2.93e-06 4.49e-06 3.58e-06 1.43e-06 4.84e-06 1.81e-06 2.66e-06 1.72e-06 4.19e-06 3.82e-06 1.96e-06 4.88e-07 5.47e-07 1.46e-06 2.1e-06 1.02e-06 9.83e-07 3.91e-07 8.94e-07 3.88e-07 7.69e-07 4.95e-06 3.82e-07 1.57e-07 6.09e-07 6.75e-07 9.75e-07 5.21e-07 4.23e-07
ENSG00000131238 PPT1 980880 2.8e-07 1.34e-07 5.82e-08 1.9e-07 1.03e-07 8.45e-08 1.73e-07 5.62e-08 1.5e-07 6.75e-08 1.73e-07 1.11e-07 1.69e-07 7.64e-08 5.98e-08 7.97e-08 4.31e-08 1.56e-07 6.92e-08 4.78e-08 1.27e-07 1.31e-07 1.58e-07 2.87e-08 1.65e-07 1.26e-07 1.12e-07 1.01e-07 1.24e-07 9.49e-08 1.06e-07 3.03e-08 3.51e-08 8.89e-08 3.46e-08 2.69e-08 5.61e-08 8.63e-08 6.71e-08 4.47e-08 5.41e-08 1.46e-07 5.08e-08 1.13e-08 3.84e-08 1.92e-08 1e-07 1.9e-09 4.8e-08
ENSG00000164002 EXO5 569866 7.74e-07 4.24e-07 1.27e-07 3.58e-07 9.16e-08 1.77e-07 5.13e-07 1.55e-07 4.18e-07 2.39e-07 5.73e-07 3.61e-07 6.27e-07 1.1e-07 1.9e-07 2.23e-07 2.98e-07 3.74e-07 1.97e-07 1.28e-07 2.05e-07 3.71e-07 3.19e-07 1.36e-07 6.39e-07 2.54e-07 2.62e-07 2.24e-07 3.56e-07 4.1e-07 2.55e-07 6.13e-08 4.74e-08 1.42e-07 3.04e-07 9.51e-08 1.18e-07 7.53e-08 4.23e-08 5.77e-08 8.02e-08 4.02e-07 2.92e-08 1.73e-08 1.08e-07 1.59e-08 1.01e-07 1.18e-08 6.03e-08
ENSG00000171793 CTPS1 99272 5.79e-06 7.52e-06 1.32e-06 3.85e-06 2.17e-06 2.6e-06 9.17e-06 1.69e-06 6.07e-06 4.12e-06 9e-06 3.93e-06 1.12e-05 3.18e-06 1.66e-06 5.6e-06 3.71e-06 4.31e-06 2.54e-06 2.58e-06 4.39e-06 7.64e-06 5.93e-06 2.82e-06 9.83e-06 3.09e-06 4.19e-06 2.62e-06 7.52e-06 7.83e-06 3.94e-06 8.65e-07 1.21e-06 2.98e-06 2.82e-06 2.19e-06 1.71e-06 1.46e-06 1.62e-06 1.01e-06 9.34e-07 8.28e-06 9.28e-07 1.9e-07 7.7e-07 1.31e-06 1.24e-06 7.67e-07 4.03e-07
ENSG00000179862 CITED4 216241 2.62e-06 2.57e-06 5.75e-07 1.68e-06 8e-07 7.85e-07 1.92e-06 8.79e-07 2.25e-06 1.2e-06 2.49e-06 1.48e-06 3.52e-06 1.34e-06 9.33e-07 1.98e-06 1.45e-06 2.25e-06 1.46e-06 1.47e-06 1.39e-06 3.12e-06 2.59e-06 1.42e-06 3.53e-06 1.21e-06 1.45e-06 1.8e-06 2.66e-06 1.83e-06 1.84e-06 4.53e-07 6.22e-07 1.33e-06 1.35e-06 9.62e-07 8.91e-07 4.65e-07 1.18e-06 3.64e-07 2.78e-07 3.42e-06 6.18e-07 1.89e-07 3.61e-07 4.01e-07 8.85e-07 2.62e-07 1.78e-07
ENSG00000204060 FOXO6 -283315 1.35e-06 1.4e-06 2.86e-07 1.23e-06 4.93e-07 6.68e-07 1.37e-06 4.22e-07 1.73e-06 7.15e-07 2.01e-06 1.32e-06 2.57e-06 4.11e-07 3.66e-07 1.04e-06 1.07e-06 1.18e-06 5.55e-07 6.02e-07 6.18e-07 1.9e-06 1.44e-06 8.29e-07 2.35e-06 1.02e-06 1.01e-06 9.87e-07 1.66e-06 1.3e-06 8.65e-07 2.7e-07 3.98e-07 7.02e-07 6.88e-07 5.92e-07 6.99e-07 3.43e-07 5.01e-07 2.27e-07 3.03e-07 2.12e-06 3.52e-07 1.32e-07 3.91e-07 3.08e-07 3.77e-07 2.52e-07 2.44e-07
ENSG00000281207 SLFNL1-AS1 64017 9.28e-06 9.91e-06 1.98e-06 6.2e-06 2.42e-06 4.65e-06 1.16e-05 2.18e-06 1.02e-05 5.49e-06 1.29e-05 5.76e-06 1.66e-05 3.59e-06 3.35e-06 6.66e-06 5.31e-06 8.79e-06 3.32e-06 3.12e-06 6.39e-06 1.04e-05 9.61e-06 3.81e-06 1.58e-05 4.49e-06 6.34e-06 4.83e-06 1.26e-05 1.02e-05 5.93e-06 1.08e-06 1.33e-06 3.8e-06 4.9e-06 2.82e-06 1.71e-06 2.06e-06 2.22e-06 1.42e-06 1.59e-06 1.29e-05 1.49e-06 3.05e-07 1.29e-06 1.96e-06 1.91e-06 7.99e-07 6.24e-07