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Genes within 1Mb (chr1:40987831:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -254323 sc-eQTL 6.46e-01 -0.0917 0.199 0.056 B_Activated L2
ENSG00000049089 COL9A2 670018 sc-eQTL 7.84e-01 -0.0539 0.197 0.056 B_Activated L2
ENSG00000066136 NFYC 296183 sc-eQTL 8.81e-01 0.033 0.221 0.056 B_Activated L2
ENSG00000084070 SMAP2 642981 sc-eQTL 4.06e-01 0.0924 0.111 0.056 B_Activated L2
ENSG00000084073 ZMPSTE24 729595 sc-eQTL 4.65e-01 -0.154 0.211 0.056 B_Activated L2
ENSG00000117000 RLF 826444 sc-eQTL 3.33e-01 0.189 0.195 0.056 B_Activated L2
ENSG00000117010 ZNF684 456258 sc-eQTL 3.56e-01 0.175 0.189 0.056 B_Activated L2
ENSG00000131236 CAP1 947598 sc-eQTL 1.92e-02 -0.42 0.178 0.056 B_Activated L2
ENSG00000131238 PPT1 890104 sc-eQTL 9.03e-01 0.0271 0.223 0.056 B_Activated L2
ENSG00000164002 EXO5 479090 sc-eQTL 7.36e-01 -0.0572 0.169 0.056 B_Activated L2
ENSG00000171793 CTPS1 8143 sc-eQTL 8.17e-01 0.0463 0.199 0.056 B_Activated L2
ENSG00000179862 CITED4 125468 sc-eQTL 6.50e-01 -0.0743 0.164 0.056 B_Activated L2
ENSG00000187815 ZFP69 510541 sc-eQTL 8.72e-01 -0.0292 0.18 0.056 B_Activated L2
ENSG00000259943 AL050341.2 729864 sc-eQTL 8.82e-01 0.0255 0.172 0.056 B_Activated L2
ENSG00000272145 NFYC-AS1 295765 sc-eQTL 1.58e-01 0.261 0.184 0.056 B_Activated L2
ENSG00000010803 SCMH1 -254323 sc-eQTL 3.49e-01 0.194 0.207 0.053 CD8_TCM L2
ENSG00000066136 NFYC 296183 sc-eQTL 5.73e-01 -0.117 0.207 0.053 CD8_TCM L2
ENSG00000084070 SMAP2 642981 sc-eQTL 8.22e-01 0.0281 0.125 0.053 CD8_TCM L2
ENSG00000084073 ZMPSTE24 729595 sc-eQTL 4.42e-01 -0.165 0.215 0.053 CD8_TCM L2
ENSG00000117000 RLF 826444 sc-eQTL 4.07e-01 -0.126 0.151 0.053 CD8_TCM L2
ENSG00000117010 ZNF684 456258 sc-eQTL 3.69e-01 -0.177 0.196 0.053 CD8_TCM L2
ENSG00000131236 CAP1 947598 sc-eQTL 5.55e-01 -0.0818 0.138 0.053 CD8_TCM L2
ENSG00000131238 PPT1 890104 sc-eQTL 1.18e-01 -0.335 0.213 0.053 CD8_TCM L2
ENSG00000164002 EXO5 479090 sc-eQTL 2.94e-01 0.21 0.199 0.053 CD8_TCM L2
ENSG00000171793 CTPS1 8143 sc-eQTL 1.09e-01 0.287 0.178 0.053 CD8_TCM L2
ENSG00000179862 CITED4 125468 sc-eQTL 3.28e-01 0.15 0.152 0.053 CD8_TCM L2
ENSG00000187801 ZFP69B 537729 sc-eQTL 1.40e-01 -0.278 0.187 0.053 CD8_TCM L2
ENSG00000187815 ZFP69 510541 sc-eQTL 1.06e-02 -0.482 0.187 0.053 CD8_TCM L2
ENSG00000259943 AL050341.2 729864 sc-eQTL 4.89e-01 0.139 0.201 0.053 CD8_TCM L2
ENSG00000272145 NFYC-AS1 295765 sc-eQTL 5.22e-01 0.121 0.188 0.053 CD8_TCM L2
ENSG00000010803 SCMH1 -254323 sc-eQTL 7.85e-02 0.456 0.257 0.059 PB L2
ENSG00000049089 COL9A2 670018 sc-eQTL 3.13e-01 -0.207 0.205 0.059 PB L2
ENSG00000066136 NFYC 296183 sc-eQTL 2.31e-01 -0.267 0.222 0.059 PB L2
ENSG00000084070 SMAP2 642981 sc-eQTL 4.31e-01 -0.128 0.161 0.059 PB L2
ENSG00000084073 ZMPSTE24 729595 sc-eQTL 3.00e-01 0.197 0.189 0.059 PB L2
ENSG00000117000 RLF 826444 sc-eQTL 9.99e-01 0.000188 0.236 0.059 PB L2
ENSG00000117010 ZNF684 456258 sc-eQTL 2.66e-01 -0.218 0.195 0.059 PB L2
ENSG00000131236 CAP1 947598 sc-eQTL 7.27e-01 0.0689 0.197 0.059 PB L2
ENSG00000131238 PPT1 890104 sc-eQTL 6.15e-01 -0.109 0.215 0.059 PB L2
ENSG00000164002 EXO5 479090 sc-eQTL 2.94e-01 -0.226 0.215 0.059 PB L2
ENSG00000171793 CTPS1 8143 sc-eQTL 2.52e-01 0.26 0.225 0.059 PB L2
ENSG00000179862 CITED4 125468 sc-eQTL 8.10e-01 0.0483 0.2 0.059 PB L2
ENSG00000187815 ZFP69 510541 sc-eQTL 1.19e-01 -0.329 0.209 0.059 PB L2
ENSG00000259943 AL050341.2 729864 sc-eQTL 4.09e-01 0.184 0.223 0.059 PB L2
ENSG00000272145 NFYC-AS1 295765 sc-eQTL 3.61e-01 -0.192 0.21 0.059 PB L2
ENSG00000010803 SCMH1 -254323 sc-eQTL 3.94e-01 -0.159 0.186 0.05 Pro_T L2
ENSG00000066136 NFYC 296183 sc-eQTL 6.34e-01 0.0853 0.179 0.05 Pro_T L2
ENSG00000084070 SMAP2 642981 sc-eQTL 1.07e-01 -0.247 0.153 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 729595 sc-eQTL 5.51e-02 0.291 0.151 0.05 Pro_T L2
ENSG00000117000 RLF 826444 sc-eQTL 5.46e-01 -0.112 0.185 0.05 Pro_T L2
ENSG00000117010 ZNF684 456258 sc-eQTL 1.08e-01 -0.295 0.183 0.05 Pro_T L2
ENSG00000131236 CAP1 947598 sc-eQTL 6.68e-02 -0.271 0.147 0.05 Pro_T L2
ENSG00000131238 PPT1 890104 sc-eQTL 5.54e-01 0.0987 0.167 0.05 Pro_T L2
ENSG00000164002 EXO5 479090 sc-eQTL 8.59e-01 0.035 0.197 0.05 Pro_T L2
ENSG00000171793 CTPS1 8143 sc-eQTL 9.46e-01 -0.0118 0.175 0.05 Pro_T L2
ENSG00000179862 CITED4 125468 sc-eQTL 2.61e-01 -0.185 0.164 0.05 Pro_T L2
ENSG00000187801 ZFP69B 537729 sc-eQTL 5.73e-01 0.0921 0.163 0.05 Pro_T L2
ENSG00000187815 ZFP69 510541 sc-eQTL 1.51e-01 0.267 0.185 0.05 Pro_T L2
ENSG00000259943 AL050341.2 729864 sc-eQTL 1.27e-02 -0.466 0.185 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 295765 sc-eQTL 1.39e-01 -0.269 0.181 0.05 Pro_T L2
ENSG00000010803 SCMH1 -254323 sc-eQTL 8.62e-01 0.0342 0.197 0.056 pDC L2
ENSG00000049089 COL9A2 670018 sc-eQTL 1.81e-01 -0.255 0.19 0.056 pDC L2
ENSG00000066136 NFYC 296183 sc-eQTL 3.14e-01 -0.225 0.222 0.056 pDC L2
ENSG00000084070 SMAP2 642981 sc-eQTL 9.75e-01 -0.00491 0.155 0.056 pDC L2
ENSG00000084073 ZMPSTE24 729595 sc-eQTL 2.89e-01 -0.194 0.183 0.056 pDC L2
ENSG00000117000 RLF 826444 sc-eQTL 8.86e-01 -0.0305 0.213 0.056 pDC L2
ENSG00000117010 ZNF684 456258 sc-eQTL 1.84e-01 -0.271 0.203 0.056 pDC L2
ENSG00000117016 RIMS3 322149 sc-eQTL 4.07e-01 -0.152 0.183 0.056 pDC L2
ENSG00000131236 CAP1 947598 sc-eQTL 4.52e-01 0.134 0.177 0.056 pDC L2
ENSG00000131238 PPT1 890104 sc-eQTL 7.24e-01 -0.0633 0.179 0.056 pDC L2
ENSG00000164002 EXO5 479090 sc-eQTL 5.07e-01 0.121 0.182 0.056 pDC L2
ENSG00000171793 CTPS1 8143 sc-eQTL 6.55e-01 -0.0792 0.177 0.056 pDC L2
ENSG00000179862 CITED4 125468 sc-eQTL 8.79e-01 0.0269 0.177 0.056 pDC L2
ENSG00000187815 ZFP69 510541 sc-eQTL 2.39e-01 0.221 0.187 0.056 pDC L2
ENSG00000259943 AL050341.2 729864 sc-eQTL 8.40e-01 -0.0392 0.194 0.056 pDC L2
ENSG00000272145 NFYC-AS1 295765 sc-eQTL 8.44e-01 0.0375 0.191 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117013 KCNQ4 204044 eQTL 4.41e-02 -0.125 0.0621 0.0 0.0 0.079
ENSG00000117016 RIMS3 322149 eQTL 4.99e-03 0.149 0.0528 0.0 0.0 0.079
ENSG00000171790 SLFNL1 -35406 eQTL 0.000445 0.171 0.0487 0.00196 0.00163 0.079
ENSG00000171793 CTPS1 8496 eQTL 5.91e-45 0.443 0.0299 0.0 0.00918 0.079
ENSG00000238287 AL603839.3 479170 eQTL 0.015 0.182 0.0746 0.0 0.0 0.079
ENSG00000281207 SLFNL1-AS1 -26759 eQTL 3.87e-07 0.223 0.0436 0.126 0.105 0.079

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000010803 \N -254285 1.29e-06 9.88e-07 8.9e-08 5.24e-07 9.93e-08 3.28e-07 7.02e-07 3.38e-07 1.15e-06 3.12e-07 1.95e-06 5.68e-07 1.73e-06 2.72e-07 4.37e-07 2.83e-07 5.41e-07 4.4e-07 8e-08 9.17e-08 1.87e-07 6.91e-07 3.84e-07 6.65e-08 1.92e-06 1.94e-07 4.91e-07 2.74e-07 4.63e-07 6.81e-07 8.46e-07 5.08e-08 3.38e-08 1.16e-07 3.4e-07 3.57e-08 4.62e-08 8.68e-08 4.9e-08 8.06e-08 4.64e-08 1.55e-06 4.71e-08 1.19e-08 1.25e-07 8.76e-09 1.2e-07 1.98e-09 4.72e-08
ENSG00000066136 \N 296142 8.25e-07 8.81e-07 6.41e-08 4.14e-07 1.03e-07 1.85e-07 5.31e-07 2.71e-07 7.85e-07 2.34e-07 1.87e-06 4.55e-07 1.16e-06 1.84e-07 3.12e-07 1.63e-07 2.25e-07 3.73e-07 7.16e-08 8.69e-08 1.48e-07 4.38e-07 2.67e-07 4.27e-08 1.36e-06 1.39e-07 2.94e-07 1.95e-07 2.76e-07 3.71e-07 7.03e-07 4.61e-08 3.96e-08 9.61e-08 3.38e-07 2.74e-08 5.58e-08 9.3e-08 6.21e-08 5.45e-08 4.41e-08 1.22e-06 1.65e-08 1.58e-08 8.43e-08 6.68e-09 1.19e-07 1.89e-09 4.82e-08
ENSG00000171793 CTPS1 8496 4.67e-05 2.79e-05 3.89e-06 1.22e-05 3.15e-06 1.28e-05 2.99e-05 3.02e-06 1.92e-05 1.09e-05 2.74e-05 9.35e-06 3.59e-05 9.05e-06 5.53e-06 1.13e-05 1.02e-05 1.81e-05 5.37e-06 4.62e-06 9.55e-06 2.42e-05 2.05e-05 5.14e-06 3.13e-05 5.37e-06 8.33e-06 8.03e-06 1.93e-05 1.65e-05 1.33e-05 1.26e-06 1.38e-06 3.85e-06 8.54e-06 3.76e-06 1.73e-06 2.82e-06 3.25e-06 2.33e-06 1.14e-06 3e-05 2.99e-06 2.2e-07 1.95e-06 2.52e-06 2.71e-06 1.06e-06 9.94e-07
ENSG00000281207 SLFNL1-AS1 -26759 1.39e-05 1.68e-05 1.25e-06 6.7e-06 1.73e-06 5.13e-06 1.17e-05 1.85e-06 1.05e-05 5.42e-06 1.86e-05 5.88e-06 2.28e-05 4.54e-06 3.46e-06 6.44e-06 4.55e-06 7.88e-06 2.11e-06 2.57e-06 4.63e-06 1.14e-05 7.49e-06 2.06e-06 1.78e-05 3.1e-06 4.85e-06 3.38e-06 9.12e-06 7.93e-06 8.77e-06 4.17e-07 5.37e-07 2.22e-06 4.55e-06 1.18e-06 9.48e-07 4.18e-07 1.57e-06 7.33e-07 1.51e-07 1.89e-05 1.48e-06 1.74e-07 7.17e-07 9.92e-07 9.76e-07 4.11e-07 3.91e-07