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Genes within 1Mb (chr1:40986714:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -255440 sc-eQTL 6.46e-01 -0.0917 0.199 0.056 B_Activated L2
ENSG00000049089 COL9A2 668901 sc-eQTL 7.84e-01 -0.0539 0.197 0.056 B_Activated L2
ENSG00000066136 NFYC 295066 sc-eQTL 8.81e-01 0.033 0.221 0.056 B_Activated L2
ENSG00000084070 SMAP2 641864 sc-eQTL 4.06e-01 0.0924 0.111 0.056 B_Activated L2
ENSG00000084073 ZMPSTE24 728478 sc-eQTL 4.65e-01 -0.154 0.211 0.056 B_Activated L2
ENSG00000117000 RLF 825327 sc-eQTL 3.33e-01 0.189 0.195 0.056 B_Activated L2
ENSG00000117010 ZNF684 455141 sc-eQTL 3.56e-01 0.175 0.189 0.056 B_Activated L2
ENSG00000131236 CAP1 946481 sc-eQTL 1.92e-02 -0.42 0.178 0.056 B_Activated L2
ENSG00000131238 PPT1 888987 sc-eQTL 9.03e-01 0.0271 0.223 0.056 B_Activated L2
ENSG00000164002 EXO5 477973 sc-eQTL 7.36e-01 -0.0572 0.169 0.056 B_Activated L2
ENSG00000171793 CTPS1 7026 sc-eQTL 8.17e-01 0.0463 0.199 0.056 B_Activated L2
ENSG00000179862 CITED4 124351 sc-eQTL 6.50e-01 -0.0743 0.164 0.056 B_Activated L2
ENSG00000187815 ZFP69 509424 sc-eQTL 8.72e-01 -0.0292 0.18 0.056 B_Activated L2
ENSG00000259943 AL050341.2 728747 sc-eQTL 8.82e-01 0.0255 0.172 0.056 B_Activated L2
ENSG00000272145 NFYC-AS1 294648 sc-eQTL 1.58e-01 0.261 0.184 0.056 B_Activated L2
ENSG00000010803 SCMH1 -255440 sc-eQTL 3.49e-01 0.194 0.207 0.053 CD8_TCM L2
ENSG00000066136 NFYC 295066 sc-eQTL 5.73e-01 -0.117 0.207 0.053 CD8_TCM L2
ENSG00000084070 SMAP2 641864 sc-eQTL 8.22e-01 0.0281 0.125 0.053 CD8_TCM L2
ENSG00000084073 ZMPSTE24 728478 sc-eQTL 4.42e-01 -0.165 0.215 0.053 CD8_TCM L2
ENSG00000117000 RLF 825327 sc-eQTL 4.07e-01 -0.126 0.151 0.053 CD8_TCM L2
ENSG00000117010 ZNF684 455141 sc-eQTL 3.69e-01 -0.177 0.196 0.053 CD8_TCM L2
ENSG00000131236 CAP1 946481 sc-eQTL 5.55e-01 -0.0818 0.138 0.053 CD8_TCM L2
ENSG00000131238 PPT1 888987 sc-eQTL 1.18e-01 -0.335 0.213 0.053 CD8_TCM L2
ENSG00000164002 EXO5 477973 sc-eQTL 2.94e-01 0.21 0.199 0.053 CD8_TCM L2
ENSG00000171793 CTPS1 7026 sc-eQTL 1.09e-01 0.287 0.178 0.053 CD8_TCM L2
ENSG00000179862 CITED4 124351 sc-eQTL 3.28e-01 0.15 0.152 0.053 CD8_TCM L2
ENSG00000187801 ZFP69B 536612 sc-eQTL 1.40e-01 -0.278 0.187 0.053 CD8_TCM L2
ENSG00000187815 ZFP69 509424 sc-eQTL 1.06e-02 -0.482 0.187 0.053 CD8_TCM L2
ENSG00000259943 AL050341.2 728747 sc-eQTL 4.89e-01 0.139 0.201 0.053 CD8_TCM L2
ENSG00000272145 NFYC-AS1 294648 sc-eQTL 5.22e-01 0.121 0.188 0.053 CD8_TCM L2
ENSG00000010803 SCMH1 -255440 sc-eQTL 7.85e-02 0.456 0.257 0.059 PB L2
ENSG00000049089 COL9A2 668901 sc-eQTL 3.13e-01 -0.207 0.205 0.059 PB L2
ENSG00000066136 NFYC 295066 sc-eQTL 2.31e-01 -0.267 0.222 0.059 PB L2
ENSG00000084070 SMAP2 641864 sc-eQTL 4.31e-01 -0.128 0.161 0.059 PB L2
ENSG00000084073 ZMPSTE24 728478 sc-eQTL 3.00e-01 0.197 0.189 0.059 PB L2
ENSG00000117000 RLF 825327 sc-eQTL 9.99e-01 0.000188 0.236 0.059 PB L2
ENSG00000117010 ZNF684 455141 sc-eQTL 2.66e-01 -0.218 0.195 0.059 PB L2
ENSG00000131236 CAP1 946481 sc-eQTL 7.27e-01 0.0689 0.197 0.059 PB L2
ENSG00000131238 PPT1 888987 sc-eQTL 6.15e-01 -0.109 0.215 0.059 PB L2
ENSG00000164002 EXO5 477973 sc-eQTL 2.94e-01 -0.226 0.215 0.059 PB L2
ENSG00000171793 CTPS1 7026 sc-eQTL 2.52e-01 0.26 0.225 0.059 PB L2
ENSG00000179862 CITED4 124351 sc-eQTL 8.10e-01 0.0483 0.2 0.059 PB L2
ENSG00000187815 ZFP69 509424 sc-eQTL 1.19e-01 -0.329 0.209 0.059 PB L2
ENSG00000259943 AL050341.2 728747 sc-eQTL 4.09e-01 0.184 0.223 0.059 PB L2
ENSG00000272145 NFYC-AS1 294648 sc-eQTL 3.61e-01 -0.192 0.21 0.059 PB L2
ENSG00000010803 SCMH1 -255440 sc-eQTL 3.94e-01 -0.159 0.186 0.05 Pro_T L2
ENSG00000066136 NFYC 295066 sc-eQTL 6.34e-01 0.0853 0.179 0.05 Pro_T L2
ENSG00000084070 SMAP2 641864 sc-eQTL 1.07e-01 -0.247 0.153 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 728478 sc-eQTL 5.51e-02 0.291 0.151 0.05 Pro_T L2
ENSG00000117000 RLF 825327 sc-eQTL 5.46e-01 -0.112 0.185 0.05 Pro_T L2
ENSG00000117010 ZNF684 455141 sc-eQTL 1.08e-01 -0.295 0.183 0.05 Pro_T L2
ENSG00000131236 CAP1 946481 sc-eQTL 6.68e-02 -0.271 0.147 0.05 Pro_T L2
ENSG00000131238 PPT1 888987 sc-eQTL 5.54e-01 0.0987 0.167 0.05 Pro_T L2
ENSG00000164002 EXO5 477973 sc-eQTL 8.59e-01 0.035 0.197 0.05 Pro_T L2
ENSG00000171793 CTPS1 7026 sc-eQTL 9.46e-01 -0.0118 0.175 0.05 Pro_T L2
ENSG00000179862 CITED4 124351 sc-eQTL 2.61e-01 -0.185 0.164 0.05 Pro_T L2
ENSG00000187801 ZFP69B 536612 sc-eQTL 5.73e-01 0.0921 0.163 0.05 Pro_T L2
ENSG00000187815 ZFP69 509424 sc-eQTL 1.51e-01 0.267 0.185 0.05 Pro_T L2
ENSG00000259943 AL050341.2 728747 sc-eQTL 1.27e-02 -0.466 0.185 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 294648 sc-eQTL 1.39e-01 -0.269 0.181 0.05 Pro_T L2
ENSG00000010803 SCMH1 -255440 sc-eQTL 8.62e-01 0.0342 0.197 0.056 pDC L2
ENSG00000049089 COL9A2 668901 sc-eQTL 1.81e-01 -0.255 0.19 0.056 pDC L2
ENSG00000066136 NFYC 295066 sc-eQTL 3.14e-01 -0.225 0.222 0.056 pDC L2
ENSG00000084070 SMAP2 641864 sc-eQTL 9.75e-01 -0.00491 0.155 0.056 pDC L2
ENSG00000084073 ZMPSTE24 728478 sc-eQTL 2.89e-01 -0.194 0.183 0.056 pDC L2
ENSG00000117000 RLF 825327 sc-eQTL 8.86e-01 -0.0305 0.213 0.056 pDC L2
ENSG00000117010 ZNF684 455141 sc-eQTL 1.84e-01 -0.271 0.203 0.056 pDC L2
ENSG00000117016 RIMS3 321032 sc-eQTL 4.07e-01 -0.152 0.183 0.056 pDC L2
ENSG00000131236 CAP1 946481 sc-eQTL 4.52e-01 0.134 0.177 0.056 pDC L2
ENSG00000131238 PPT1 888987 sc-eQTL 7.24e-01 -0.0633 0.179 0.056 pDC L2
ENSG00000164002 EXO5 477973 sc-eQTL 5.07e-01 0.121 0.182 0.056 pDC L2
ENSG00000171793 CTPS1 7026 sc-eQTL 6.55e-01 -0.0792 0.177 0.056 pDC L2
ENSG00000179862 CITED4 124351 sc-eQTL 8.79e-01 0.0269 0.177 0.056 pDC L2
ENSG00000187815 ZFP69 509424 sc-eQTL 2.39e-01 0.221 0.187 0.056 pDC L2
ENSG00000259943 AL050341.2 728747 sc-eQTL 8.40e-01 -0.0392 0.194 0.056 pDC L2
ENSG00000272145 NFYC-AS1 294648 sc-eQTL 8.44e-01 0.0375 0.191 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117013 KCNQ4 202927 eQTL 4.41e-02 -0.125 0.0621 0.0 0.0 0.079
ENSG00000117016 RIMS3 321032 eQTL 4.99e-03 0.149 0.0528 0.0 0.0 0.079
ENSG00000171790 SLFNL1 -36523 eQTL 0.000445 0.171 0.0487 0.00196 0.00163 0.079
ENSG00000171793 CTPS1 7379 eQTL 5.91e-45 0.443 0.0299 0.0 0.00913 0.079
ENSG00000238287 AL603839.3 478053 eQTL 0.015 0.182 0.0746 0.0 0.0 0.079
ENSG00000281207 SLFNL1-AS1 -27876 eQTL 3.87e-07 0.223 0.0436 0.126 0.106 0.079

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000010803 \N -255402 4.85e-06 5.34e-06 6.5e-07 2.96e-06 1.61e-06 1.57e-06 6.72e-06 9.97e-07 5.13e-06 2.5e-06 6.49e-06 3.32e-06 7.67e-06 2.49e-06 1.55e-06 3.41e-06 1.93e-06 3.4e-06 1.94e-06 1.34e-06 2.78e-06 5.5e-06 4.6e-06 1.48e-06 7.14e-06 1.48e-06 2.29e-06 1.78e-06 4.44e-06 4.45e-06 2.77e-06 3.42e-07 5.68e-07 1.6e-06 2.05e-06 9.21e-07 1.07e-06 4.24e-07 9.26e-07 3.58e-07 3.05e-07 7.98e-06 5.08e-07 1.8e-07 4.39e-07 1.2e-06 7.69e-07 5.83e-07 4.67e-07
ENSG00000066136 \N 295025 4.33e-06 4.68e-06 8.56e-07 1.95e-06 1.21e-06 1.33e-06 3.57e-06 9.02e-07 3.17e-06 1.73e-06 4.22e-06 2.61e-06 6.77e-06 1.19e-06 1.1e-06 2.07e-06 1.85e-06 2.03e-06 1.5e-06 9.5e-07 2.29e-06 4.63e-06 3.4e-06 1.84e-06 4.77e-06 1.13e-06 1.84e-06 1.78e-06 3.85e-06 3.41e-06 2.05e-06 2.62e-07 7.33e-07 1.67e-06 1.92e-06 9.67e-07 9.42e-07 4.68e-07 1.32e-06 3.46e-07 3.67e-07 5.7e-06 4.34e-07 1.89e-07 3.27e-07 3.93e-07 5.64e-07 2.87e-07 3.24e-07
ENSG00000171793 CTPS1 7379 4.42e-05 3.76e-05 6.99e-06 1.75e-05 7.11e-06 1.81e-05 5.35e-05 6.26e-06 4.21e-05 2.03e-05 5.14e-05 2.24e-05 5.93e-05 1.77e-05 8.64e-06 2.63e-05 2.28e-05 3.18e-05 9.91e-06 8.77e-06 2.06e-05 4.32e-05 3.76e-05 1.14e-05 5.72e-05 1.13e-05 1.89e-05 1.66e-05 3.86e-05 3.24e-05 2.77e-05 2.34e-06 4.23e-06 8.21e-06 1.47e-05 7.55e-06 4.1e-06 3.77e-06 6.44e-06 3.93e-06 1.87e-06 4.48e-05 4.49e-06 4.6e-07 3.16e-06 5.28e-06 5.2e-06 2.29e-06 1.65e-06
ENSG00000281207 SLFNL1-AS1 -27876 3.39e-05 3.3e-05 5.92e-06 1.55e-05 5.54e-06 1.39e-05 4.44e-05 4.46e-06 3.01e-05 1.52e-05 3.78e-05 1.65e-05 4.85e-05 1.35e-05 6.95e-06 1.79e-05 1.61e-05 2.37e-05 7.63e-06 6.57e-06 1.41e-05 3.13e-05 3.11e-05 8.8e-06 4.33e-05 7.48e-06 1.38e-05 1.24e-05 3.14e-05 2.47e-05 1.98e-05 1.62e-06 2.53e-06 6.8e-06 1.12e-05 5.68e-06 3.09e-06 3.18e-06 4.54e-06 3.28e-06 1.7e-06 3.78e-05 3.21e-06 3.62e-07 2.3e-06 3.9e-06 4.04e-06 1.56e-06 1.49e-06