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Genes within 1Mb (chr1:40981264:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -260890 sc-eQTL 6.46e-01 -0.0917 0.199 0.056 B_Activated L2
ENSG00000049089 COL9A2 663451 sc-eQTL 7.84e-01 -0.0539 0.197 0.056 B_Activated L2
ENSG00000066136 NFYC 289616 sc-eQTL 8.81e-01 0.033 0.221 0.056 B_Activated L2
ENSG00000084070 SMAP2 636414 sc-eQTL 4.06e-01 0.0924 0.111 0.056 B_Activated L2
ENSG00000084073 ZMPSTE24 723028 sc-eQTL 4.65e-01 -0.154 0.211 0.056 B_Activated L2
ENSG00000117000 RLF 819877 sc-eQTL 3.33e-01 0.189 0.195 0.056 B_Activated L2
ENSG00000117010 ZNF684 449691 sc-eQTL 3.56e-01 0.175 0.189 0.056 B_Activated L2
ENSG00000131236 CAP1 941031 sc-eQTL 1.92e-02 -0.42 0.178 0.056 B_Activated L2
ENSG00000131238 PPT1 883537 sc-eQTL 9.03e-01 0.0271 0.223 0.056 B_Activated L2
ENSG00000164002 EXO5 472523 sc-eQTL 7.36e-01 -0.0572 0.169 0.056 B_Activated L2
ENSG00000171793 CTPS1 1576 sc-eQTL 8.17e-01 0.0463 0.199 0.056 B_Activated L2
ENSG00000179862 CITED4 118901 sc-eQTL 6.50e-01 -0.0743 0.164 0.056 B_Activated L2
ENSG00000187815 ZFP69 503974 sc-eQTL 8.72e-01 -0.0292 0.18 0.056 B_Activated L2
ENSG00000259943 AL050341.2 723297 sc-eQTL 8.82e-01 0.0255 0.172 0.056 B_Activated L2
ENSG00000272145 NFYC-AS1 289198 sc-eQTL 1.58e-01 0.261 0.184 0.056 B_Activated L2
ENSG00000010803 SCMH1 -260890 sc-eQTL 3.49e-01 0.194 0.207 0.053 CD8_TCM L2
ENSG00000066136 NFYC 289616 sc-eQTL 5.73e-01 -0.117 0.207 0.053 CD8_TCM L2
ENSG00000084070 SMAP2 636414 sc-eQTL 8.22e-01 0.0281 0.125 0.053 CD8_TCM L2
ENSG00000084073 ZMPSTE24 723028 sc-eQTL 4.42e-01 -0.165 0.215 0.053 CD8_TCM L2
ENSG00000117000 RLF 819877 sc-eQTL 4.07e-01 -0.126 0.151 0.053 CD8_TCM L2
ENSG00000117010 ZNF684 449691 sc-eQTL 3.69e-01 -0.177 0.196 0.053 CD8_TCM L2
ENSG00000131236 CAP1 941031 sc-eQTL 5.55e-01 -0.0818 0.138 0.053 CD8_TCM L2
ENSG00000131238 PPT1 883537 sc-eQTL 1.18e-01 -0.335 0.213 0.053 CD8_TCM L2
ENSG00000164002 EXO5 472523 sc-eQTL 2.94e-01 0.21 0.199 0.053 CD8_TCM L2
ENSG00000171793 CTPS1 1576 sc-eQTL 1.09e-01 0.287 0.178 0.053 CD8_TCM L2
ENSG00000179862 CITED4 118901 sc-eQTL 3.28e-01 0.15 0.152 0.053 CD8_TCM L2
ENSG00000187801 ZFP69B 531162 sc-eQTL 1.40e-01 -0.278 0.187 0.053 CD8_TCM L2
ENSG00000187815 ZFP69 503974 sc-eQTL 1.06e-02 -0.482 0.187 0.053 CD8_TCM L2
ENSG00000259943 AL050341.2 723297 sc-eQTL 4.89e-01 0.139 0.201 0.053 CD8_TCM L2
ENSG00000272145 NFYC-AS1 289198 sc-eQTL 5.22e-01 0.121 0.188 0.053 CD8_TCM L2
ENSG00000010803 SCMH1 -260890 sc-eQTL 7.85e-02 0.456 0.257 0.059 PB L2
ENSG00000049089 COL9A2 663451 sc-eQTL 3.13e-01 -0.207 0.205 0.059 PB L2
ENSG00000066136 NFYC 289616 sc-eQTL 2.31e-01 -0.267 0.222 0.059 PB L2
ENSG00000084070 SMAP2 636414 sc-eQTL 4.31e-01 -0.128 0.161 0.059 PB L2
ENSG00000084073 ZMPSTE24 723028 sc-eQTL 3.00e-01 0.197 0.189 0.059 PB L2
ENSG00000117000 RLF 819877 sc-eQTL 9.99e-01 0.000188 0.236 0.059 PB L2
ENSG00000117010 ZNF684 449691 sc-eQTL 2.66e-01 -0.218 0.195 0.059 PB L2
ENSG00000131236 CAP1 941031 sc-eQTL 7.27e-01 0.0689 0.197 0.059 PB L2
ENSG00000131238 PPT1 883537 sc-eQTL 6.15e-01 -0.109 0.215 0.059 PB L2
ENSG00000164002 EXO5 472523 sc-eQTL 2.94e-01 -0.226 0.215 0.059 PB L2
ENSG00000171793 CTPS1 1576 sc-eQTL 2.52e-01 0.26 0.225 0.059 PB L2
ENSG00000179862 CITED4 118901 sc-eQTL 8.10e-01 0.0483 0.2 0.059 PB L2
ENSG00000187815 ZFP69 503974 sc-eQTL 1.19e-01 -0.329 0.209 0.059 PB L2
ENSG00000259943 AL050341.2 723297 sc-eQTL 4.09e-01 0.184 0.223 0.059 PB L2
ENSG00000272145 NFYC-AS1 289198 sc-eQTL 3.61e-01 -0.192 0.21 0.059 PB L2
ENSG00000010803 SCMH1 -260890 sc-eQTL 3.94e-01 -0.159 0.186 0.05 Pro_T L2
ENSG00000066136 NFYC 289616 sc-eQTL 6.34e-01 0.0853 0.179 0.05 Pro_T L2
ENSG00000084070 SMAP2 636414 sc-eQTL 1.07e-01 -0.247 0.153 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 723028 sc-eQTL 5.51e-02 0.291 0.151 0.05 Pro_T L2
ENSG00000117000 RLF 819877 sc-eQTL 5.46e-01 -0.112 0.185 0.05 Pro_T L2
ENSG00000117010 ZNF684 449691 sc-eQTL 1.08e-01 -0.295 0.183 0.05 Pro_T L2
ENSG00000131236 CAP1 941031 sc-eQTL 6.68e-02 -0.271 0.147 0.05 Pro_T L2
ENSG00000131238 PPT1 883537 sc-eQTL 5.54e-01 0.0987 0.167 0.05 Pro_T L2
ENSG00000164002 EXO5 472523 sc-eQTL 8.59e-01 0.035 0.197 0.05 Pro_T L2
ENSG00000171793 CTPS1 1576 sc-eQTL 9.46e-01 -0.0118 0.175 0.05 Pro_T L2
ENSG00000179862 CITED4 118901 sc-eQTL 2.61e-01 -0.185 0.164 0.05 Pro_T L2
ENSG00000187801 ZFP69B 531162 sc-eQTL 5.73e-01 0.0921 0.163 0.05 Pro_T L2
ENSG00000187815 ZFP69 503974 sc-eQTL 1.51e-01 0.267 0.185 0.05 Pro_T L2
ENSG00000259943 AL050341.2 723297 sc-eQTL 1.27e-02 -0.466 0.185 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 289198 sc-eQTL 1.39e-01 -0.269 0.181 0.05 Pro_T L2
ENSG00000010803 SCMH1 -260890 sc-eQTL 8.62e-01 0.0342 0.197 0.056 pDC L2
ENSG00000049089 COL9A2 663451 sc-eQTL 1.81e-01 -0.255 0.19 0.056 pDC L2
ENSG00000066136 NFYC 289616 sc-eQTL 3.14e-01 -0.225 0.222 0.056 pDC L2
ENSG00000084070 SMAP2 636414 sc-eQTL 9.75e-01 -0.00491 0.155 0.056 pDC L2
ENSG00000084073 ZMPSTE24 723028 sc-eQTL 2.89e-01 -0.194 0.183 0.056 pDC L2
ENSG00000117000 RLF 819877 sc-eQTL 8.86e-01 -0.0305 0.213 0.056 pDC L2
ENSG00000117010 ZNF684 449691 sc-eQTL 1.84e-01 -0.271 0.203 0.056 pDC L2
ENSG00000117016 RIMS3 315582 sc-eQTL 4.07e-01 -0.152 0.183 0.056 pDC L2
ENSG00000131236 CAP1 941031 sc-eQTL 4.52e-01 0.134 0.177 0.056 pDC L2
ENSG00000131238 PPT1 883537 sc-eQTL 7.24e-01 -0.0633 0.179 0.056 pDC L2
ENSG00000164002 EXO5 472523 sc-eQTL 5.07e-01 0.121 0.182 0.056 pDC L2
ENSG00000171793 CTPS1 1576 sc-eQTL 6.55e-01 -0.0792 0.177 0.056 pDC L2
ENSG00000179862 CITED4 118901 sc-eQTL 8.79e-01 0.0269 0.177 0.056 pDC L2
ENSG00000187815 ZFP69 503974 sc-eQTL 2.39e-01 0.221 0.187 0.056 pDC L2
ENSG00000259943 AL050341.2 723297 sc-eQTL 8.40e-01 -0.0392 0.194 0.056 pDC L2
ENSG00000272145 NFYC-AS1 289198 sc-eQTL 8.44e-01 0.0375 0.191 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117013 KCNQ4 197477 eQTL 4.60e-02 -0.124 0.0622 0.0 0.0 0.079
ENSG00000117016 RIMS3 315582 eQTL 5.17e-03 0.148 0.0528 0.0 0.0 0.079
ENSG00000171790 SLFNL1 -41973 eQTL 0.000456 0.171 0.0487 0.00193 0.0016 0.079
ENSG00000171793 CTPS1 1929 eQTL 4.23e-45 0.444 0.0299 0.00114 0.0108 0.079
ENSG00000238287 AL603839.3 472603 eQTL 0.0143 0.183 0.0746 0.0 0.0 0.079
ENSG00000281207 SLFNL1-AS1 -33326 eQTL 4.3e-07 0.222 0.0436 0.114 0.0968 0.079

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000010803 \N -260852 1.4e-06 2.52e-06 2.93e-07 2.27e-06 4.39e-07 7.68e-07 1.29e-06 4.37e-07 1.75e-06 7.98e-07 2.12e-06 9.26e-07 5.3e-06 1.44e-06 5.38e-07 9.9e-07 1.03e-06 1.35e-06 6.25e-07 1.14e-06 6.24e-07 2.25e-06 1.68e-06 6.41e-07 2.84e-06 7.38e-07 1.01e-06 1.46e-06 1.77e-06 1.53e-06 1.74e-06 4.91e-07 3.79e-07 1.26e-06 1.27e-06 8.73e-07 8.38e-07 3.71e-07 1.17e-06 2.15e-07 2.81e-07 3.87e-06 2.46e-07 1.95e-07 2.96e-07 3.67e-07 2.35e-07 2.65e-07 2.89e-07
ENSG00000066136 \N 289575 1.29e-06 2.43e-06 2.66e-07 1.9e-06 4.48e-07 6.45e-07 1.26e-06 3.71e-07 1.76e-06 7.15e-07 1.83e-06 7.84e-07 3.96e-06 9.92e-07 3.31e-07 9.85e-07 1.14e-06 1.1e-06 5.62e-07 8.21e-07 7.54e-07 1.9e-06 1.34e-06 5.58e-07 2.49e-06 4.39e-07 1.02e-06 1.07e-06 1.66e-06 1.29e-06 1.08e-06 4.17e-07 3.35e-07 9.6e-07 9.46e-07 6.4e-07 7.91e-07 3.45e-07 9.59e-07 2.03e-07 2.84e-07 3.43e-06 1.22e-07 1.89e-07 1.66e-07 3.32e-07 2.08e-07 2.49e-07 2.46e-07
ENSG00000171793 CTPS1 1929 3.98e-05 3.51e-05 6.54e-06 1.61e-05 6.41e-06 1.57e-05 4.83e-05 5.02e-06 3.52e-05 1.71e-05 4.26e-05 1.91e-05 5.27e-05 1.54e-05 7.83e-06 2.17e-05 1.96e-05 2.79e-05 8.54e-06 7.2e-06 1.76e-05 3.73e-05 3.46e-05 9.89e-06 4.87e-05 8.74e-06 1.6e-05 1.46e-05 3.51e-05 2.73e-05 2.25e-05 1.63e-06 2.9e-06 7.58e-06 1.27e-05 6.19e-06 3.43e-06 3.23e-06 5.18e-06 3.56e-06 1.7e-06 4.06e-05 3.98e-06 4.09e-07 2.71e-06 4.51e-06 4.33e-06 1.72e-06 1.53e-06
ENSG00000281207 SLFNL1-AS1 -33326 1.42e-05 2.24e-05 2.94e-06 1.22e-05 2.4e-06 6.55e-06 2.26e-05 2.9e-06 1.73e-05 7.59e-06 2.15e-05 7.55e-06 3.3e-05 7.1e-06 4.72e-06 9.46e-06 8.19e-06 1.27e-05 4.21e-06 4.22e-06 7.19e-06 1.58e-05 1.64e-05 4.48e-06 2.73e-05 4.61e-06 7.98e-06 6.89e-06 1.77e-05 1.4e-05 1.16e-05 1.1e-06 1.46e-06 4.09e-06 6.9e-06 3.78e-06 1.71e-06 2.37e-06 2.95e-06 1.84e-06 1.01e-06 2.46e-05 1.84e-06 2.03e-07 7.94e-07 2.45e-06 2.1e-06 7.33e-07 6.16e-07