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Genes within 1Mb (chr1:40970729:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -271425 sc-eQTL 6.46e-01 -0.0917 0.199 0.056 B_Activated L2
ENSG00000049089 COL9A2 652916 sc-eQTL 7.84e-01 -0.0539 0.197 0.056 B_Activated L2
ENSG00000066136 NFYC 279081 sc-eQTL 8.81e-01 0.033 0.221 0.056 B_Activated L2
ENSG00000084070 SMAP2 625879 sc-eQTL 4.06e-01 0.0924 0.111 0.056 B_Activated L2
ENSG00000084073 ZMPSTE24 712493 sc-eQTL 4.65e-01 -0.154 0.211 0.056 B_Activated L2
ENSG00000117000 RLF 809342 sc-eQTL 3.33e-01 0.189 0.195 0.056 B_Activated L2
ENSG00000117010 ZNF684 439156 sc-eQTL 3.56e-01 0.175 0.189 0.056 B_Activated L2
ENSG00000131236 CAP1 930496 sc-eQTL 1.92e-02 -0.42 0.178 0.056 B_Activated L2
ENSG00000131238 PPT1 873002 sc-eQTL 9.03e-01 0.0271 0.223 0.056 B_Activated L2
ENSG00000164002 EXO5 461988 sc-eQTL 7.36e-01 -0.0572 0.169 0.056 B_Activated L2
ENSG00000171793 CTPS1 -8959 sc-eQTL 8.17e-01 0.0463 0.199 0.056 B_Activated L2
ENSG00000179862 CITED4 108366 sc-eQTL 6.50e-01 -0.0743 0.164 0.056 B_Activated L2
ENSG00000187815 ZFP69 493439 sc-eQTL 8.72e-01 -0.0292 0.18 0.056 B_Activated L2
ENSG00000259943 AL050341.2 712762 sc-eQTL 8.82e-01 0.0255 0.172 0.056 B_Activated L2
ENSG00000272145 NFYC-AS1 278663 sc-eQTL 1.58e-01 0.261 0.184 0.056 B_Activated L2
ENSG00000010803 SCMH1 -271425 sc-eQTL 3.49e-01 0.194 0.207 0.053 CD8_TCM L2
ENSG00000066136 NFYC 279081 sc-eQTL 5.73e-01 -0.117 0.207 0.053 CD8_TCM L2
ENSG00000084070 SMAP2 625879 sc-eQTL 8.22e-01 0.0281 0.125 0.053 CD8_TCM L2
ENSG00000084073 ZMPSTE24 712493 sc-eQTL 4.42e-01 -0.165 0.215 0.053 CD8_TCM L2
ENSG00000117000 RLF 809342 sc-eQTL 4.07e-01 -0.126 0.151 0.053 CD8_TCM L2
ENSG00000117010 ZNF684 439156 sc-eQTL 3.69e-01 -0.177 0.196 0.053 CD8_TCM L2
ENSG00000131236 CAP1 930496 sc-eQTL 5.55e-01 -0.0818 0.138 0.053 CD8_TCM L2
ENSG00000131238 PPT1 873002 sc-eQTL 1.18e-01 -0.335 0.213 0.053 CD8_TCM L2
ENSG00000164002 EXO5 461988 sc-eQTL 2.94e-01 0.21 0.199 0.053 CD8_TCM L2
ENSG00000171793 CTPS1 -8959 sc-eQTL 1.09e-01 0.287 0.178 0.053 CD8_TCM L2
ENSG00000179862 CITED4 108366 sc-eQTL 3.28e-01 0.15 0.152 0.053 CD8_TCM L2
ENSG00000187801 ZFP69B 520627 sc-eQTL 1.40e-01 -0.278 0.187 0.053 CD8_TCM L2
ENSG00000187815 ZFP69 493439 sc-eQTL 1.06e-02 -0.482 0.187 0.053 CD8_TCM L2
ENSG00000259943 AL050341.2 712762 sc-eQTL 4.89e-01 0.139 0.201 0.053 CD8_TCM L2
ENSG00000272145 NFYC-AS1 278663 sc-eQTL 5.22e-01 0.121 0.188 0.053 CD8_TCM L2
ENSG00000010803 SCMH1 -271425 sc-eQTL 7.85e-02 0.456 0.257 0.059 PB L2
ENSG00000049089 COL9A2 652916 sc-eQTL 3.13e-01 -0.207 0.205 0.059 PB L2
ENSG00000066136 NFYC 279081 sc-eQTL 2.31e-01 -0.267 0.222 0.059 PB L2
ENSG00000084070 SMAP2 625879 sc-eQTL 4.31e-01 -0.128 0.161 0.059 PB L2
ENSG00000084073 ZMPSTE24 712493 sc-eQTL 3.00e-01 0.197 0.189 0.059 PB L2
ENSG00000117000 RLF 809342 sc-eQTL 9.99e-01 0.000188 0.236 0.059 PB L2
ENSG00000117010 ZNF684 439156 sc-eQTL 2.66e-01 -0.218 0.195 0.059 PB L2
ENSG00000131236 CAP1 930496 sc-eQTL 7.27e-01 0.0689 0.197 0.059 PB L2
ENSG00000131238 PPT1 873002 sc-eQTL 6.15e-01 -0.109 0.215 0.059 PB L2
ENSG00000164002 EXO5 461988 sc-eQTL 2.94e-01 -0.226 0.215 0.059 PB L2
ENSG00000171793 CTPS1 -8959 sc-eQTL 2.52e-01 0.26 0.225 0.059 PB L2
ENSG00000179862 CITED4 108366 sc-eQTL 8.10e-01 0.0483 0.2 0.059 PB L2
ENSG00000187815 ZFP69 493439 sc-eQTL 1.19e-01 -0.329 0.209 0.059 PB L2
ENSG00000259943 AL050341.2 712762 sc-eQTL 4.09e-01 0.184 0.223 0.059 PB L2
ENSG00000272145 NFYC-AS1 278663 sc-eQTL 3.61e-01 -0.192 0.21 0.059 PB L2
ENSG00000010803 SCMH1 -271425 sc-eQTL 3.94e-01 -0.159 0.186 0.05 Pro_T L2
ENSG00000066136 NFYC 279081 sc-eQTL 6.34e-01 0.0853 0.179 0.05 Pro_T L2
ENSG00000084070 SMAP2 625879 sc-eQTL 1.07e-01 -0.247 0.153 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 712493 sc-eQTL 5.51e-02 0.291 0.151 0.05 Pro_T L2
ENSG00000117000 RLF 809342 sc-eQTL 5.46e-01 -0.112 0.185 0.05 Pro_T L2
ENSG00000117010 ZNF684 439156 sc-eQTL 1.08e-01 -0.295 0.183 0.05 Pro_T L2
ENSG00000131236 CAP1 930496 sc-eQTL 6.68e-02 -0.271 0.147 0.05 Pro_T L2
ENSG00000131238 PPT1 873002 sc-eQTL 5.54e-01 0.0987 0.167 0.05 Pro_T L2
ENSG00000164002 EXO5 461988 sc-eQTL 8.59e-01 0.035 0.197 0.05 Pro_T L2
ENSG00000171793 CTPS1 -8959 sc-eQTL 9.46e-01 -0.0118 0.175 0.05 Pro_T L2
ENSG00000179862 CITED4 108366 sc-eQTL 2.61e-01 -0.185 0.164 0.05 Pro_T L2
ENSG00000187801 ZFP69B 520627 sc-eQTL 5.73e-01 0.0921 0.163 0.05 Pro_T L2
ENSG00000187815 ZFP69 493439 sc-eQTL 1.51e-01 0.267 0.185 0.05 Pro_T L2
ENSG00000259943 AL050341.2 712762 sc-eQTL 1.27e-02 -0.466 0.185 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 278663 sc-eQTL 1.39e-01 -0.269 0.181 0.05 Pro_T L2
ENSG00000010803 SCMH1 -271425 sc-eQTL 8.62e-01 0.0342 0.197 0.056 pDC L2
ENSG00000049089 COL9A2 652916 sc-eQTL 1.81e-01 -0.255 0.19 0.056 pDC L2
ENSG00000066136 NFYC 279081 sc-eQTL 3.14e-01 -0.225 0.222 0.056 pDC L2
ENSG00000084070 SMAP2 625879 sc-eQTL 9.75e-01 -0.00491 0.155 0.056 pDC L2
ENSG00000084073 ZMPSTE24 712493 sc-eQTL 2.89e-01 -0.194 0.183 0.056 pDC L2
ENSG00000117000 RLF 809342 sc-eQTL 8.86e-01 -0.0305 0.213 0.056 pDC L2
ENSG00000117010 ZNF684 439156 sc-eQTL 1.84e-01 -0.271 0.203 0.056 pDC L2
ENSG00000117016 RIMS3 305047 sc-eQTL 4.07e-01 -0.152 0.183 0.056 pDC L2
ENSG00000131236 CAP1 930496 sc-eQTL 4.52e-01 0.134 0.177 0.056 pDC L2
ENSG00000131238 PPT1 873002 sc-eQTL 7.24e-01 -0.0633 0.179 0.056 pDC L2
ENSG00000164002 EXO5 461988 sc-eQTL 5.07e-01 0.121 0.182 0.056 pDC L2
ENSG00000171793 CTPS1 -8959 sc-eQTL 6.55e-01 -0.0792 0.177 0.056 pDC L2
ENSG00000179862 CITED4 108366 sc-eQTL 8.79e-01 0.0269 0.177 0.056 pDC L2
ENSG00000187815 ZFP69 493439 sc-eQTL 2.39e-01 0.221 0.187 0.056 pDC L2
ENSG00000259943 AL050341.2 712762 sc-eQTL 8.40e-01 -0.0392 0.194 0.056 pDC L2
ENSG00000272145 NFYC-AS1 278663 sc-eQTL 8.44e-01 0.0375 0.191 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117016 RIMS3 305047 eQTL 5.28e-03 0.148 0.0528 0.0 0.0 0.078
ENSG00000171790 SLFNL1 -52508 eQTL 0.00047 0.171 0.0486 0.00188 0.00156 0.078
ENSG00000171793 CTPS1 -8606 eQTL 3.4e-45 0.444 0.0298 0.00106 0.00961 0.078
ENSG00000238287 AL603839.3 462068 eQTL 0.0146 0.183 0.0746 0.0 0.0 0.078
ENSG00000281207 SLFNL1-AS1 -43861 eQTL 5.3e-07 0.22 0.0436 0.091 0.0793 0.078

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000010803 \N -271387 2.7e-06 3.84e-06 2.51e-07 1.71e-06 4.89e-07 7.29e-07 1.56e-06 4.22e-07 1.81e-06 8.55e-07 2.51e-06 1.34e-06 3.43e-06 1.43e-06 8.91e-07 1.2e-06 9.55e-07 1.79e-06 6.47e-07 9.31e-07 6.41e-07 3.01e-06 2.02e-06 6.22e-07 3.4e-06 1.12e-06 1.19e-06 1.54e-06 1.69e-06 1.67e-06 1.99e-06 3.03e-07 3.94e-07 5.73e-07 9.09e-07 4.39e-07 7.71e-07 3.27e-07 4.87e-07 1.98e-07 2.71e-07 3.96e-06 4.6e-07 3.36e-08 3.04e-07 3.26e-07 2.43e-07 5.45e-08 1.68e-07
ENSG00000066136 \N 279040 2.41e-06 3.66e-06 2.16e-07 1.57e-06 4.74e-07 6.22e-07 1.36e-06 4.23e-07 1.69e-06 8.15e-07 2.46e-06 1.39e-06 3.53e-06 1.43e-06 9.26e-07 1.06e-06 1.04e-06 1.54e-06 5.3e-07 7.96e-07 6.41e-07 2.77e-06 1.82e-06 5.76e-07 3.16e-06 1.01e-06 1.15e-06 1.45e-06 1.65e-06 1.64e-06 1.84e-06 2.85e-07 3.85e-07 6.11e-07 8.8e-07 4.62e-07 7.3e-07 2.92e-07 4.73e-07 2.27e-07 2.78e-07 3.35e-06 4.81e-07 2.65e-08 2.84e-07 3.62e-07 2.6e-07 7e-08 1.35e-07
ENSG00000171793 CTPS1 -8606 3.39e-05 3.01e-05 5.11e-06 1.38e-05 4.53e-06 1.12e-05 3.78e-05 3.93e-06 2.55e-05 1.33e-05 3.47e-05 1.29e-05 4.26e-05 1.24e-05 6.5e-06 1.56e-05 1.38e-05 2.14e-05 6.7e-06 5.62e-06 1.3e-05 2.86e-05 2.67e-05 7.36e-06 3.77e-05 7.01e-06 1.13e-05 1.12e-05 2.78e-05 2.1e-05 1.83e-05 1.62e-06 2.29e-06 5.98e-06 9.85e-06 4.51e-06 2.65e-06 2.99e-06 4.1e-06 3.15e-06 1.67e-06 3.78e-05 3.43e-06 2.5e-07 2.06e-06 3.34e-06 3.35e-06 1.4e-06 1.36e-06
ENSG00000281207 SLFNL1-AS1 -43861 1.53e-05 1.81e-05 1.98e-06 7.89e-06 2.32e-06 5.46e-06 1.85e-05 2.33e-06 1.37e-05 6.62e-06 1.87e-05 6.48e-06 2.57e-05 5.5e-06 5.07e-06 8.18e-06 7.66e-06 9.99e-06 3.42e-06 3.24e-06 6.76e-06 1.5e-05 1.31e-05 3.54e-06 2.22e-05 4.53e-06 7.14e-06 6.17e-06 1.45e-05 1.07e-05 1.05e-05 1.07e-06 1.27e-06 3.31e-06 5.42e-06 2.65e-06 1.72e-06 1.93e-06 2.19e-06 1.2e-06 7.88e-07 2.31e-05 2.23e-06 1.66e-07 8.13e-07 2.15e-06 1.46e-06 7.44e-07 4.64e-07