Genes within 1Mb (chr1:40965683:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000010803 SCMH1 -276433 eQTL 7.47e-04 0.0467 0.0138 0.0 0.0 0.414
ENSG00000049089 COL9A2 648397 eQTL 5.37e-02 -0.0431 0.0223 0.00121 0.0 0.414
ENSG00000084070 SMAP2 620833 eQTL 3.31e-02 0.0219 0.0102 0.0 0.0 0.414
ENSG00000117010 ZNF684 434110 eQTL 4.30e-02 -0.0343 0.0169 0.0 0.0 0.414
ENSG00000171790 SLFNL1 -57554 eQTL 8.37e-04 0.0919 0.0274 0.00111 0.0 0.414
ENSG00000171793 CTPS1 -13652 eQTL 6.82e-46 0.252 0.0168 0.0 0.0 0.414
ENSG00000204060 FOXO6 -396239 eQTL 1.12e-02 0.0569 0.0224 0.0 0.0 0.414
ENSG00000281207 SLFNL1-AS1 -48907 eQTL 6.57e-06 0.112 0.0247 0.0 0.0 0.414


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000010803 SCMH1 -276433 2.64e-06 2.62e-06 3.38e-07 1.8e-06 3.67e-07 8.1e-07 1.33e-06 4.17e-07 1.69e-06 6.94e-07 1.92e-06 1.45e-06 3.47e-06 1.22e-06 4.63e-07 1.17e-06 1.17e-06 1.85e-06 6.59e-07 1.07e-06 6.41e-07 2.57e-06 1.68e-06 8.04e-07 2.95e-06 9.37e-07 1.13e-06 1.05e-06 1.68e-06 1.87e-06 1.25e-06 3.05e-07 4.47e-07 8.93e-07 1.01e-06 6.22e-07 7.27e-07 3.5e-07 1.13e-06 2.33e-07 2.58e-07 3.37e-06 3.7e-07 1.95e-07 1.81e-07 3.25e-07 2.74e-07 1.97e-07 2.61e-07
ENSG00000049089 COL9A2 648397 9.14e-07 6.26e-07 1.76e-07 4.32e-07 1.11e-07 1.71e-07 5.28e-07 9.78e-08 3.51e-07 2.06e-07 5.93e-07 3.27e-07 7.71e-07 1.49e-07 1.57e-07 2.23e-07 3.69e-07 3.95e-07 2.6e-07 1.86e-07 1.92e-07 4.14e-07 3.03e-07 1.25e-07 7.71e-07 2.2e-07 2.56e-07 2.24e-07 2.76e-07 6.19e-07 2.6e-07 3.77e-08 4.57e-08 1.42e-07 3.35e-07 6.73e-08 1.12e-07 6.97e-08 8.26e-08 2.74e-08 7.48e-08 6.19e-07 1.7e-08 8.04e-08 3.3e-08 1.84e-08 8.75e-08 1.18e-08 5.52e-08
ENSG00000117010 ZNF684 434110 1.24e-06 1e-06 2.29e-07 1.07e-06 1.11e-07 4.63e-07 1.2e-06 3.49e-07 1.14e-06 3.89e-07 1.36e-06 6.06e-07 1.98e-06 2.73e-07 4.38e-07 8.25e-07 9.08e-07 6.25e-07 7.25e-07 6.55e-07 3.95e-07 1.36e-06 7.96e-07 5.1e-07 2.06e-06 2.94e-07 7.12e-07 6e-07 9.73e-07 1.25e-06 5.72e-07 3.05e-07 2.19e-07 5.18e-07 5.61e-07 3.59e-07 5.02e-07 1.54e-07 4.82e-07 1.67e-07 2.44e-07 1.53e-06 7.72e-08 1.75e-07 1.25e-07 7.64e-08 1.71e-07 8.89e-08 7.91e-08
ENSG00000117013 \N 181896 4.68e-06 4.82e-06 7.8e-07 2.43e-06 4.78e-07 1.15e-06 2.84e-06 1.01e-06 3.05e-06 1.67e-06 4.16e-06 2.48e-06 7.43e-06 2.04e-06 1.14e-06 2.34e-06 1.98e-06 2.78e-06 1.43e-06 8.79e-07 1.67e-06 4.13e-06 3.21e-06 1.56e-06 4.78e-06 1.22e-06 1.87e-06 1.56e-06 3.8e-06 4.04e-06 1.96e-06 4.9e-07 7.34e-07 1.59e-06 2.1e-06 8.93e-07 8.9e-07 4.21e-07 9.07e-07 3.47e-07 2.44e-07 5.59e-06 6.22e-07 1.6e-07 3.73e-07 3.61e-07 8.19e-07 2.02e-07 1.76e-07
ENSG00000171793 CTPS1 -13652 1.57e-05 2.26e-05 3.46e-06 1.2e-05 2.96e-06 7.78e-06 2.38e-05 3.37e-06 1.65e-05 8.48e-06 2.31e-05 8.63e-06 3.55e-05 8.04e-06 5.11e-06 1.02e-05 1.05e-05 1.47e-05 5.1e-06 4.54e-06 8.49e-06 1.79e-05 1.87e-05 5.48e-06 2.84e-05 5.12e-06 8e-06 7.68e-06 1.9e-05 1.81e-05 1.25e-05 1.1e-06 1.67e-06 4.9e-06 7.51e-06 4.02e-06 1.89e-06 2.67e-06 3.56e-06 2.37e-06 1.07e-06 2.81e-05 2.46e-06 2.01e-07 1.15e-06 2.61e-06 2.91e-06 1.11e-06 9.75e-07
ENSG00000281207 SLFNL1-AS1 -48907 9.86e-06 1.27e-05 1.3e-06 6.16e-06 2.22e-06 4.28e-06 1.09e-05 2.09e-06 9.39e-06 5.11e-06 1.31e-05 5.59e-06 1.9e-05 3.56e-06 2.82e-06 6.64e-06 5.39e-06 7.7e-06 2.64e-06 2.83e-06 4.98e-06 9.57e-06 8.08e-06 3.16e-06 1.45e-05 3.09e-06 4.9e-06 3.69e-06 1.04e-05 9.19e-06 6.36e-06 8.1e-07 1.27e-06 3.1e-06 4.55e-06 2.31e-06 1.64e-06 1.85e-06 2.08e-06 9.56e-07 7.59e-07 1.51e-05 1.34e-06 1.52e-07 7.32e-07 1.62e-06 1.26e-06 7.42e-07 4.57e-07