Genes within 1Mb (chr1:40900387:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000010803 SCMH1 -341729 eQTL 1.82e-02 -0.033 0.0139 0.0 0.0 0.334
ENSG00000049089 COL9A2 583101 eQTL 2.48e-03 -0.0679 0.0224 0.0045 0.00163 0.334
ENSG00000171793 CTPS1 -78948 eQTL 3.55e-04 -0.067 0.0187 0.0 0.0 0.334
ENSG00000179862 CITED4 38021 eQTL 3.88e-53 0.393 0.024 0.0 0.0 0.334
ENSG00000259943 AL050341.2 642420 eQTL 1.62e-02 -0.0475 0.0197 0.0 0.0 0.334
ENSG00000281207 SLFNL1-AS1 -114203 eQTL 2.80e-02 -0.0551 0.025 0.0 0.0 0.334


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 583101 3.77e-07 1.7e-07 6.86e-08 2.25e-07 1.1e-07 8.89e-08 2.5e-07 5.89e-08 1.71e-07 1.15e-07 1.86e-07 1.59e-07 2.55e-07 8.44e-08 6.93e-08 9.6e-08 4.35e-08 2.21e-07 7.11e-08 6.16e-08 1.18e-07 1.89e-07 1.75e-07 4.37e-08 2.36e-07 1.31e-07 1.25e-07 1.26e-07 1.37e-07 1.81e-07 1.27e-07 4.47e-08 3.38e-08 9.5e-08 4.04e-08 3.24e-08 3.91e-08 8.37e-08 6.35e-08 6.07e-08 5.8e-08 2e-07 3.46e-08 1.55e-08 4.99e-08 1.01e-08 8.74e-08 2.05e-09 5.16e-08
ENSG00000179862 CITED4 38021 9.67e-06 1e-05 1.79e-06 6.18e-06 2.44e-06 4.26e-06 1.16e-05 2.11e-06 9.72e-06 5.42e-06 1.24e-05 5.31e-06 1.69e-05 3.72e-06 2.98e-06 6.36e-06 4.55e-06 8.11e-06 2.69e-06 2.85e-06 5.19e-06 1.04e-05 7.98e-06 3.3e-06 1.48e-05 3.87e-06 5.16e-06 4.18e-06 1.16e-05 1.05e-05 5.9e-06 9.54e-07 1.23e-06 3.31e-06 4.55e-06 2.68e-06 1.63e-06 1.9e-06 2.15e-06 1.01e-06 9.55e-07 1.29e-05 1.48e-06 1.44e-07 7.73e-07 1.68e-06 1.31e-06 7.66e-07 4.59e-07