Genes within 1Mb (chr1:40813254:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -428900 sc-eQTL 8.35e-01 -0.0422 0.202 0.051 pDC L2
ENSG00000043514 TRIT1 929743 sc-eQTL 3.17e-01 0.187 0.186 0.051 pDC L2
ENSG00000049089 COL9A2 495441 sc-eQTL 7.15e-01 0.0716 0.196 0.051 pDC L2
ENSG00000066136 NFYC 121606 sc-eQTL 3.13e-01 -0.231 0.228 0.051 pDC L2
ENSG00000084070 SMAP2 468404 sc-eQTL 2.19e-01 -0.195 0.158 0.051 pDC L2
ENSG00000084073 ZMPSTE24 555018 sc-eQTL 2.11e-01 -0.236 0.187 0.051 pDC L2
ENSG00000116990 MYCL 910998 sc-eQTL 9.29e-01 -0.0144 0.162 0.051 pDC L2
ENSG00000117000 RLF 651867 sc-eQTL 8.86e-01 0.0316 0.219 0.051 pDC L2
ENSG00000117010 ZNF684 281681 sc-eQTL 7.63e-02 0.371 0.208 0.051 pDC L2
ENSG00000117016 RIMS3 147572 sc-eQTL 1.40e-01 -0.277 0.187 0.051 pDC L2
ENSG00000131236 CAP1 773021 sc-eQTL 7.17e-01 0.066 0.182 0.051 pDC L2
ENSG00000131238 PPT1 715527 sc-eQTL 6.74e-01 -0.0774 0.183 0.051 pDC L2
ENSG00000164002 EXO5 304513 sc-eQTL 4.19e-01 0.151 0.187 0.051 pDC L2
ENSG00000168389 MFSD2A 858142 sc-eQTL 6.54e-01 0.0814 0.181 0.051 pDC L2
ENSG00000171793 CTPS1 -166434 sc-eQTL 8.92e-01 -0.0248 0.182 0.051 pDC L2
ENSG00000179862 CITED4 -49109 sc-eQTL 5.69e-01 -0.104 0.182 0.051 pDC L2
ENSG00000187815 ZFP69 335964 sc-eQTL 2.41e-01 0.226 0.192 0.051 pDC L2
ENSG00000236546 AL033527.2 915509 sc-eQTL 2.79e-01 -0.199 0.183 0.051 pDC L2
ENSG00000259943 AL050341.2 555287 sc-eQTL 2.43e-01 -0.232 0.198 0.051 pDC L2
ENSG00000272145 NFYC-AS1 121188 sc-eQTL 9.84e-01 0.00394 0.196 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117000 RLF 651867 eQTL 2.87e-02 -0.0663 0.0303 0.0 0.0 0.0329
ENSG00000131236 CAP1 773021 eQTL 1.81e-02 -0.056 0.0236 0.0017 0.0 0.0329
ENSG00000164002 EXO5 304513 eQTL 1.20e-03 -0.182 0.056 0.0 0.0 0.0329
ENSG00000179862 CITED4 -49112 eQTL 0.0116 -0.18 0.071 0.0 0.0 0.0329
ENSG00000213172 AL031985.1 448488 eQTL 0.0389 0.149 0.072 0.00148 0.0 0.0329
ENSG00000238287 AL603839.3 304593 eQTL 0.000134 0.423 0.11 0.0 0.0 0.0329


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000164002 EXO5 304513 1.29e-06 1.42e-06 3.26e-07 1.57e-06 3.43e-07 6.02e-07 1.53e-06 3.54e-07 1.74e-06 6.19e-07 2.04e-06 6.63e-07 2.67e-06 3.07e-07 5.65e-07 9.42e-07 8.49e-07 6.85e-07 8.35e-07 6.16e-07 7.54e-07 1.93e-06 8.94e-07 6.51e-07 2.41e-06 3.47e-07 1.03e-06 8.91e-07 1.46e-06 1.06e-06 8e-07 2.69e-07 2.17e-07 6.61e-07 8.07e-07 4.77e-07 6.41e-07 3.42e-07 4.8e-07 3.35e-07 2.81e-07 2.17e-06 1.67e-07 1.89e-07 2.83e-07 3.28e-07 2.15e-07 5.98e-08 1.85e-07
ENSG00000204060 \N -548668 5.59e-07 6.07e-07 8.51e-08 3.16e-07 1.13e-07 1.74e-07 4.53e-07 8.17e-08 4.26e-07 2.12e-07 6.28e-07 2.49e-07 7.93e-07 1.17e-07 1.48e-07 1.61e-07 1.17e-07 2.93e-07 1.51e-07 1.31e-07 1.91e-07 3.15e-07 3.03e-07 1.03e-07 7.42e-07 1.86e-07 2.94e-07 2.19e-07 2.66e-07 1.8e-07 2.43e-07 3.87e-08 5.64e-08 1.36e-07 3.82e-07 7.92e-08 1.05e-07 1.23e-07 6.72e-08 2.8e-08 1.04e-07 6.8e-07 2.88e-08 6.51e-08 1.33e-07 3.54e-08 9.34e-08 2.31e-08 5.65e-08