Genes within 1Mb (chr1:40784473:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -457681 sc-eQTL 3.87e-01 0.16 0.185 0.05 NK_HLA L2
ENSG00000043514 TRIT1 900962 sc-eQTL 5.71e-01 0.104 0.183 0.05 NK_HLA L2
ENSG00000066136 NFYC 92825 sc-eQTL 4.71e-01 -0.141 0.196 0.05 NK_HLA L2
ENSG00000084070 SMAP2 439623 sc-eQTL 9.59e-01 0.0065 0.125 0.05 NK_HLA L2
ENSG00000084073 ZMPSTE24 526237 sc-eQTL 8.22e-01 -0.0444 0.198 0.05 NK_HLA L2
ENSG00000116985 BMP8B 995608 sc-eQTL 1.88e-01 -0.226 0.171 0.05 NK_HLA L2
ENSG00000117000 RLF 623086 sc-eQTL 1.68e-01 0.227 0.164 0.05 NK_HLA L2
ENSG00000117010 ZNF684 252900 sc-eQTL 4.61e-01 0.141 0.191 0.05 NK_HLA L2
ENSG00000131236 CAP1 744240 sc-eQTL 2.49e-01 0.171 0.148 0.05 NK_HLA L2
ENSG00000131238 PPT1 686746 sc-eQTL 6.94e-01 -0.0757 0.192 0.05 NK_HLA L2
ENSG00000164002 EXO5 275732 sc-eQTL 6.03e-01 -0.1 0.193 0.05 NK_HLA L2
ENSG00000171793 CTPS1 -195215 sc-eQTL 5.77e-01 0.0948 0.17 0.05 NK_HLA L2
ENSG00000179862 CITED4 -77890 sc-eQTL 8.65e-01 0.0297 0.175 0.05 NK_HLA L2
ENSG00000187815 ZFP69 307183 sc-eQTL 2.68e-01 0.206 0.185 0.05 NK_HLA L2
ENSG00000259943 AL050341.2 526506 sc-eQTL 2.49e-01 -0.209 0.181 0.05 NK_HLA L2
ENSG00000272145 NFYC-AS1 92407 sc-eQTL 2.47e-01 0.219 0.189 0.05 NK_HLA L2
ENSG00000010803 SCMH1 -457681 sc-eQTL 1.24e-01 0.316 0.205 0.052 gdT L2
ENSG00000043514 TRIT1 900962 sc-eQTL 4.31e-01 0.155 0.196 0.052 gdT L2
ENSG00000066136 NFYC 92825 sc-eQTL 1.32e-01 0.344 0.227 0.052 gdT L2
ENSG00000084070 SMAP2 439623 sc-eQTL 5.41e-02 0.284 0.146 0.052 gdT L2
ENSG00000084073 ZMPSTE24 526237 sc-eQTL 2.00e-01 -0.276 0.215 0.052 gdT L2
ENSG00000116985 BMP8B 995608 sc-eQTL 6.96e-01 -0.0699 0.178 0.052 gdT L2
ENSG00000117000 RLF 623086 sc-eQTL 9.10e-01 0.0201 0.178 0.052 gdT L2
ENSG00000117010 ZNF684 252900 sc-eQTL 9.04e-01 0.0249 0.205 0.052 gdT L2
ENSG00000131236 CAP1 744240 sc-eQTL 9.51e-01 -0.00915 0.147 0.052 gdT L2
ENSG00000131238 PPT1 686746 sc-eQTL 7.51e-01 0.0663 0.208 0.052 gdT L2
ENSG00000164002 EXO5 275732 sc-eQTL 7.60e-01 0.064 0.209 0.052 gdT L2
ENSG00000168389 MFSD2A 829361 sc-eQTL 1.72e-01 -0.242 0.176 0.052 gdT L2
ENSG00000171793 CTPS1 -195215 sc-eQTL 1.12e-01 0.308 0.193 0.052 gdT L2
ENSG00000179862 CITED4 -77890 sc-eQTL 7.15e-01 -0.0728 0.199 0.052 gdT L2
ENSG00000187801 ZFP69B 334371 sc-eQTL 4.15e-01 0.159 0.194 0.052 gdT L2
ENSG00000187815 ZFP69 307183 sc-eQTL 7.59e-01 0.0643 0.209 0.052 gdT L2
ENSG00000259943 AL050341.2 526506 sc-eQTL 8.83e-02 0.34 0.198 0.052 gdT L2
ENSG00000272145 NFYC-AS1 92407 sc-eQTL 5.61e-01 0.119 0.204 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117016 \N 118791 7.05e-06 7.73e-06 2.05e-06 4.36e-06 2.4e-06 3.83e-06 9.48e-06 1.51e-06 1.06e-05 6.13e-06 9.93e-06 4.76e-06 1.21e-05 3.85e-06 2.24e-06 5.82e-06 3.74e-06 3.77e-06 2.98e-06 2.13e-06 5.46e-06 1.03e-05 5.82e-06 2.03e-06 1.3e-05 2.41e-06 4.51e-06 2.82e-06 7.52e-06 7.61e-06 5.93e-06 4.97e-07 7.03e-07 2.83e-06 3.64e-06 1.78e-06 1.71e-06 1.94e-06 9.69e-07 5.9e-07 8.81e-07 8.42e-06 1.35e-06 1.95e-07 7.07e-07 1.72e-06 1.32e-06 7.04e-07 7.09e-07
ENSG00000179862 \N -77893 1.16e-05 1.16e-05 3.55e-06 7.6e-06 3.07e-06 5.89e-06 1.68e-05 2.43e-06 1.67e-05 9.01e-06 1.6e-05 6.62e-06 2.09e-05 5.5e-06 4.35e-06 7.31e-06 7.02e-06 8e-06 4.67e-06 3.04e-06 7.4e-06 1.54e-05 1.03e-05 3.43e-06 2.32e-05 4.34e-06 7.46e-06 5.39e-06 1.35e-05 1.12e-05 1.07e-05 9.77e-07 1.23e-06 3.6e-06 6.01e-06 2.77e-06 1.81e-06 2.15e-06 1.89e-06 1.01e-06 9.41e-07 1.34e-05 1.68e-06 2.22e-07 1.43e-06 2.61e-06 2.18e-06 1.18e-06 1.11e-06
ENSG00000230638 \N -757596 3.07e-07 2.17e-07 5.35e-08 2.26e-07 1.07e-07 1.08e-07 2.74e-07 6.2e-08 3.03e-07 1.37e-07 2.18e-07 1.72e-07 4.88e-07 1.01e-07 6.53e-08 1.13e-07 4.63e-08 1.77e-07 7.76e-08 6.16e-08 1.6e-07 2.7e-07 1.75e-07 3.49e-08 3.41e-07 1.23e-07 1.25e-07 1.17e-07 1.34e-07 1.06e-07 1.59e-07 4.71e-08 4.74e-08 1.57e-07 1.01e-07 2.68e-08 1.1e-07 7.53e-08 5.27e-08 3.67e-08 5.54e-08 1.59e-07 7.37e-08 1.25e-07 4.7e-08 2.07e-08 7.92e-08 3.35e-09 5.35e-08
ENSG00000260920 \N 320154 1.28e-06 1.07e-06 2.29e-07 1.27e-06 4.68e-07 6.42e-07 1.52e-06 3.9e-07 1.68e-06 8.51e-07 2.1e-06 8.26e-07 2.88e-06 5.83e-07 5.03e-07 9.98e-07 9.14e-07 9.53e-07 5.93e-07 4.63e-07 8.89e-07 2.67e-06 1.05e-06 6.51e-07 2.43e-06 4.17e-07 1.06e-06 9.6e-07 1.6e-06 1.23e-06 9.44e-07 2.78e-07 2.89e-07 1.22e-06 8.1e-07 5e-07 8.07e-07 4.39e-07 5.15e-07 1.16e-07 2.58e-07 1.63e-06 6.16e-07 1.61e-07 1.86e-07 3.4e-07 3.2e-07 2.49e-07 4.83e-07
ENSG00000272145 \N 92407 9.72e-06 9.41e-06 2.94e-06 6.3e-06 2.4e-06 5e-06 1.19e-05 2.23e-06 1.45e-05 7.84e-06 1.33e-05 5.73e-06 1.7e-05 4.46e-06 3.67e-06 6.6e-06 5.59e-06 6.67e-06 4.09e-06 2.91e-06 6.47e-06 1.26e-05 8.08e-06 3.26e-06 1.93e-05 3.49e-06 6.33e-06 4.68e-06 1.1e-05 9.08e-06 8.77e-06 9.58e-07 1.29e-06 3.29e-06 5.11e-06 2.56e-06 1.84e-06 2.02e-06 1.39e-06 8.7e-07 1.02e-06 1.19e-05 1.45e-06 2.03e-07 9.29e-07 2.36e-06 1.86e-06 8.65e-07 1.01e-06