Genes within 1Mb (chr1:40730684:CA:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -511470 sc-eQTL 9.90e-01 0.00243 0.191 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 847173 sc-eQTL 1.36e-01 0.273 0.182 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 412871 sc-eQTL 2.00e-01 0.18 0.14 0.05 CD4_CTL L2
ENSG00000066136 NFYC 39036 sc-eQTL 8.97e-01 -0.0252 0.193 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 385834 sc-eQTL 3.84e-01 0.109 0.125 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 472448 sc-eQTL 1.20e-01 0.297 0.19 0.05 CD4_CTL L2
ENSG00000117000 RLF 569297 sc-eQTL 1.12e-01 -0.291 0.183 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 199111 sc-eQTL 6.61e-01 0.0764 0.174 0.05 CD4_CTL L2
ENSG00000131236 CAP1 690451 sc-eQTL 9.16e-01 0.0132 0.124 0.05 CD4_CTL L2
ENSG00000131238 PPT1 632957 sc-eQTL 5.53e-01 0.114 0.193 0.05 CD4_CTL L2
ENSG00000164002 EXO5 221943 sc-eQTL 9.20e-01 0.0181 0.181 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -249004 sc-eQTL 4.25e-01 -0.142 0.177 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -131679 sc-eQTL 1.19e-01 -0.237 0.151 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B 280582 sc-eQTL 6.28e-01 0.0797 0.164 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 253394 sc-eQTL 8.51e-01 -0.0336 0.178 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 472717 sc-eQTL 5.95e-01 -0.0923 0.173 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 38618 sc-eQTL 7.49e-01 0.0579 0.181 0.05 CD4_CTL L2
ENSG00000010803 SCMH1 -511470 sc-eQTL 8.23e-01 0.045 0.201 0.051 CD8_TCM L2
ENSG00000043514 TRIT1 847173 sc-eQTL 7.18e-01 -0.069 0.19 0.051 CD8_TCM L2
ENSG00000066136 NFYC 39036 sc-eQTL 7.84e-01 0.0552 0.201 0.051 CD8_TCM L2
ENSG00000084070 SMAP2 385834 sc-eQTL 5.47e-02 0.231 0.12 0.051 CD8_TCM L2
ENSG00000084073 ZMPSTE24 472448 sc-eQTL 5.34e-01 0.13 0.208 0.051 CD8_TCM L2
ENSG00000117000 RLF 569297 sc-eQTL 4.71e-01 -0.106 0.147 0.051 CD8_TCM L2
ENSG00000117010 ZNF684 199111 sc-eQTL 5.41e-01 -0.117 0.19 0.051 CD8_TCM L2
ENSG00000131236 CAP1 690451 sc-eQTL 4.66e-01 -0.0979 0.134 0.051 CD8_TCM L2
ENSG00000131238 PPT1 632957 sc-eQTL 5.53e-01 -0.124 0.208 0.051 CD8_TCM L2
ENSG00000164002 EXO5 221943 sc-eQTL 5.28e-01 -0.122 0.194 0.051 CD8_TCM L2
ENSG00000171793 CTPS1 -249004 sc-eQTL 5.25e-01 0.111 0.174 0.051 CD8_TCM L2
ENSG00000179862 CITED4 -131679 sc-eQTL 4.74e-01 -0.106 0.148 0.051 CD8_TCM L2
ENSG00000187801 ZFP69B 280582 sc-eQTL 2.82e-01 -0.196 0.182 0.051 CD8_TCM L2
ENSG00000187815 ZFP69 253394 sc-eQTL 7.95e-01 0.0478 0.184 0.051 CD8_TCM L2
ENSG00000259943 AL050341.2 472717 sc-eQTL 6.51e-01 0.0883 0.195 0.051 CD8_TCM L2
ENSG00000272145 NFYC-AS1 38618 sc-eQTL 9.92e-01 -0.00183 0.183 0.051 CD8_TCM L2
ENSG00000010803 SCMH1 -511470 sc-eQTL 1.59e-01 0.255 0.18 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 847173 sc-eQTL 6.94e-01 -0.074 0.188 0.051 NK_CD56bright L2
ENSG00000066136 NFYC 39036 sc-eQTL 9.50e-01 -0.0125 0.198 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 385834 sc-eQTL 1.90e-01 0.169 0.129 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 472448 sc-eQTL 5.50e-01 0.118 0.198 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 941819 sc-eQTL 8.23e-01 -0.0377 0.168 0.051 NK_CD56bright L2
ENSG00000117000 RLF 569297 sc-eQTL 9.18e-01 0.0172 0.166 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 199111 sc-eQTL 5.70e-01 -0.106 0.187 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 690451 sc-eQTL 4.02e-01 0.118 0.14 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 632957 sc-eQTL 2.95e-01 -0.195 0.185 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 221943 sc-eQTL 7.70e-01 0.053 0.181 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -249004 sc-eQTL 9.54e-01 0.00959 0.165 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -131679 sc-eQTL 8.44e-02 -0.297 0.171 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 253394 sc-eQTL 1.69e-01 0.253 0.183 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 472717 sc-eQTL 6.88e-01 0.0758 0.189 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 38618 sc-eQTL 2.12e-01 0.227 0.181 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -511470 sc-eQTL 8.95e-01 0.0246 0.187 0.053 NK_HLA L2
ENSG00000043514 TRIT1 847173 sc-eQTL 4.02e-01 0.155 0.184 0.053 NK_HLA L2
ENSG00000066136 NFYC 39036 sc-eQTL 5.15e-01 -0.129 0.197 0.053 NK_HLA L2
ENSG00000084070 SMAP2 385834 sc-eQTL 7.77e-01 0.0357 0.126 0.053 NK_HLA L2
ENSG00000084073 ZMPSTE24 472448 sc-eQTL 7.03e-01 -0.076 0.199 0.053 NK_HLA L2
ENSG00000116985 BMP8B 941819 sc-eQTL 2.42e-01 -0.203 0.173 0.053 NK_HLA L2
ENSG00000117000 RLF 569297 sc-eQTL 3.28e-01 0.163 0.166 0.053 NK_HLA L2
ENSG00000117010 ZNF684 199111 sc-eQTL 5.46e-01 0.116 0.192 0.053 NK_HLA L2
ENSG00000131236 CAP1 690451 sc-eQTL 4.57e-01 0.111 0.149 0.053 NK_HLA L2
ENSG00000131238 PPT1 632957 sc-eQTL 5.13e-01 -0.127 0.194 0.053 NK_HLA L2
ENSG00000164002 EXO5 221943 sc-eQTL 7.94e-01 -0.0509 0.194 0.053 NK_HLA L2
ENSG00000171793 CTPS1 -249004 sc-eQTL 4.85e-01 0.12 0.171 0.053 NK_HLA L2
ENSG00000179862 CITED4 -131679 sc-eQTL 5.99e-01 -0.0927 0.176 0.053 NK_HLA L2
ENSG00000187815 ZFP69 253394 sc-eQTL 3.48e-01 0.176 0.187 0.053 NK_HLA L2
ENSG00000259943 AL050341.2 472717 sc-eQTL 9.74e-02 -0.302 0.181 0.053 NK_HLA L2
ENSG00000272145 NFYC-AS1 38618 sc-eQTL 3.80e-01 0.167 0.19 0.053 NK_HLA L2
ENSG00000010803 SCMH1 -511470 sc-eQTL 5.85e-01 -0.159 0.291 0.052 PB L2
ENSG00000043514 TRIT1 847173 sc-eQTL 5.92e-01 0.14 0.261 0.052 PB L2
ENSG00000049089 COL9A2 412871 sc-eQTL 3.58e-01 -0.212 0.23 0.052 PB L2
ENSG00000066136 NFYC 39036 sc-eQTL 5.23e-04 0.847 0.237 0.052 PB L2
ENSG00000084070 SMAP2 385834 sc-eQTL 2.32e-02 0.408 0.177 0.052 PB L2
ENSG00000084073 ZMPSTE24 472448 sc-eQTL 6.72e-01 0.0904 0.213 0.052 PB L2
ENSG00000116985 BMP8B 941819 sc-eQTL 7.04e-01 0.0624 0.164 0.052 PB L2
ENSG00000117000 RLF 569297 sc-eQTL 6.07e-01 -0.136 0.264 0.052 PB L2
ENSG00000117010 ZNF684 199111 sc-eQTL 7.85e-01 0.06 0.22 0.052 PB L2
ENSG00000131236 CAP1 690451 sc-eQTL 3.23e-01 0.218 0.22 0.052 PB L2
ENSG00000131238 PPT1 632957 sc-eQTL 1.74e-01 0.328 0.24 0.052 PB L2
ENSG00000164002 EXO5 221943 sc-eQTL 8.98e-01 -0.0311 0.242 0.052 PB L2
ENSG00000171793 CTPS1 -249004 sc-eQTL 9.92e-01 -0.00258 0.254 0.052 PB L2
ENSG00000179862 CITED4 -131679 sc-eQTL 1.58e-01 -0.317 0.223 0.052 PB L2
ENSG00000187815 ZFP69 253394 sc-eQTL 5.33e-01 0.148 0.237 0.052 PB L2
ENSG00000198754 OXCT2 959336 sc-eQTL 1.94e-01 -0.276 0.211 0.052 PB L2
ENSG00000259943 AL050341.2 472717 sc-eQTL 1.46e-01 0.363 0.248 0.052 PB L2
ENSG00000272145 NFYC-AS1 38618 sc-eQTL 9.68e-01 0.00953 0.236 0.052 PB L2
ENSG00000010803 SCMH1 -511470 sc-eQTL 2.07e-01 -0.227 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 847173 sc-eQTL 6.51e-03 -0.503 0.183 0.05 Pro_T L2
ENSG00000066136 NFYC 39036 sc-eQTL 6.66e-01 -0.0747 0.173 0.05 Pro_T L2
ENSG00000084070 SMAP2 385834 sc-eQTL 3.87e-01 0.128 0.148 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 472448 sc-eQTL 7.33e-01 0.05 0.147 0.05 Pro_T L2
ENSG00000116985 BMP8B 941819 sc-eQTL 6.13e-01 -0.0551 0.109 0.05 Pro_T L2
ENSG00000117000 RLF 569297 sc-eQTL 2.41e-01 -0.209 0.178 0.05 Pro_T L2
ENSG00000117010 ZNF684 199111 sc-eQTL 3.68e-01 -0.16 0.177 0.05 Pro_T L2
ENSG00000131236 CAP1 690451 sc-eQTL 9.20e-01 0.0143 0.143 0.05 Pro_T L2
ENSG00000131238 PPT1 632957 sc-eQTL 3.32e-02 0.341 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 221943 sc-eQTL 9.25e-02 -0.319 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 775572 sc-eQTL 7.64e-01 -0.041 0.136 0.05 Pro_T L2
ENSG00000171793 CTPS1 -249004 sc-eQTL 5.77e-01 0.0943 0.169 0.05 Pro_T L2
ENSG00000179862 CITED4 -131679 sc-eQTL 5.26e-01 0.101 0.159 0.05 Pro_T L2
ENSG00000187801 ZFP69B 280582 sc-eQTL 2.99e-01 0.163 0.157 0.05 Pro_T L2
ENSG00000187815 ZFP69 253394 sc-eQTL 3.96e-02 0.368 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 959336 sc-eQTL 8.17e-01 -0.0214 0.0924 0.05 Pro_T L2
ENSG00000259943 AL050341.2 472717 sc-eQTL 4.79e-01 0.129 0.181 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 38618 sc-eQTL 5.41e-01 -0.108 0.176 0.05 Pro_T L2
ENSG00000010803 SCMH1 -511470 sc-eQTL 2.44e-01 0.242 0.207 0.055 gdT L2
ENSG00000043514 TRIT1 847173 sc-eQTL 5.29e-02 0.382 0.196 0.055 gdT L2
ENSG00000066136 NFYC 39036 sc-eQTL 7.71e-02 0.406 0.228 0.055 gdT L2
ENSG00000084070 SMAP2 385834 sc-eQTL 5.21e-02 0.288 0.147 0.055 gdT L2
ENSG00000084073 ZMPSTE24 472448 sc-eQTL 8.74e-02 -0.37 0.215 0.055 gdT L2
ENSG00000116985 BMP8B 941819 sc-eQTL 8.35e-01 0.0376 0.18 0.055 gdT L2
ENSG00000117000 RLF 569297 sc-eQTL 9.86e-01 -0.00315 0.179 0.055 gdT L2
ENSG00000117010 ZNF684 199111 sc-eQTL 9.11e-01 -0.023 0.207 0.055 gdT L2
ENSG00000131236 CAP1 690451 sc-eQTL 3.52e-01 -0.138 0.148 0.055 gdT L2
ENSG00000131238 PPT1 632957 sc-eQTL 8.49e-01 0.0399 0.21 0.055 gdT L2
ENSG00000164002 EXO5 221943 sc-eQTL 9.82e-01 0.00484 0.21 0.055 gdT L2
ENSG00000168389 MFSD2A 775572 sc-eQTL 2.26e-01 -0.216 0.177 0.055 gdT L2
ENSG00000171793 CTPS1 -249004 sc-eQTL 4.97e-01 0.133 0.195 0.055 gdT L2
ENSG00000179862 CITED4 -131679 sc-eQTL 1.95e-01 -0.259 0.199 0.055 gdT L2
ENSG00000187801 ZFP69B 280582 sc-eQTL 7.42e-01 0.0645 0.196 0.055 gdT L2
ENSG00000187815 ZFP69 253394 sc-eQTL 9.15e-01 -0.0226 0.21 0.055 gdT L2
ENSG00000198754 OXCT2 959336 sc-eQTL 9.11e-01 0.0166 0.148 0.055 gdT L2
ENSG00000259943 AL050341.2 472717 sc-eQTL 1.74e-01 0.273 0.2 0.055 gdT L2
ENSG00000272145 NFYC-AS1 38618 sc-eQTL 6.98e-01 0.08 0.206 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117013 KCNQ4 -53103 eQTL 7.84e-03 0.212 0.0797 0.0 0.0 0.0466
ENSG00000117016 RIMS3 65002 eQTL 2.57e-04 0.248 0.0676 0.00138 0.0 0.0466
ENSG00000164002 EXO5 221943 eQTL 2.66e-02 -0.108 0.0486 0.0 0.0 0.0466
ENSG00000179862 CITED4 -131682 eQTL 0.00833 0.162 0.0614 0.0 0.0 0.0466
ENSG00000187801 ZFP69B 280577 eQTL 0.0213 -0.141 0.0613 0.0 0.0 0.0466
ENSG00000238287 AL603839.3 222023 eQTL 3.55e-11 0.63 0.094 0.0 0.0 0.0466
ENSG00000259943 AL050341.2 472717 eQTL 0.000231 -0.165 0.0445 0.00562 0.0 0.0466
ENSG00000272145 NFYC-AS1 38618 eQTL 2.17e-05 -0.331 0.0774 0.0671 0.0587 0.0466


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117016 RIMS3 65002 5.12e-05 2.48e-05 3.38e-06 3.36e-06 2.39e-06 5.12e-06 2.15e-05 1.03e-06 7.35e-06 3.16e-06 1.21e-05 4.77e-06 2.02e-05 3.99e-06 5.37e-06 6.58e-06 4.74e-06 7.04e-06 1.51e-06 1.44e-06 4.55e-06 1.5e-05 1.01e-05 2.15e-06 1.53e-05 2.05e-06 7.06e-06 2.66e-06 1.53e-05 7.61e-06 4.57e-06 4.72e-07 7.34e-07 2.73e-06 2.42e-06 1.16e-06 9.52e-07 6.96e-07 1.04e-06 3.57e-07 3.06e-07 6.87e-05 4.94e-06 1.63e-07 7.49e-07 9.43e-07 1.01e-06 1.41e-07 1.77e-07
ENSG00000179862 CITED4 -131682 1.3e-05 1.26e-05 1.43e-06 2.43e-06 1.5e-06 2.55e-06 1.02e-05 4.44e-07 5.08e-06 1.43e-06 8.15e-06 3.37e-06 1.05e-05 3.85e-06 3.64e-06 4.08e-06 3.61e-06 3.91e-06 1.43e-06 1.2e-06 3.04e-06 8.24e-06 4.43e-06 1.62e-06 9.14e-06 1.13e-06 4.04e-06 1.72e-06 7.01e-06 4.93e-06 2.77e-06 5.06e-08 6.23e-07 2.16e-06 2.03e-06 8.71e-07 8.21e-07 4.48e-07 6.21e-07 2.22e-07 3.54e-07 2.31e-05 4.91e-06 1.54e-07 3.51e-07 3.94e-07 8e-07 8.35e-08 9.32e-08
ENSG00000187801 ZFP69B 280577 5.72e-06 6.3e-06 5.84e-07 1.94e-06 1e-06 1.19e-06 5.49e-06 3.49e-07 1.98e-06 7.11e-07 4.32e-06 1.69e-06 6.37e-06 1.97e-06 1.17e-06 2.01e-06 1.81e-06 2.08e-06 5.76e-07 7.55e-07 1.44e-06 4.91e-06 2.42e-06 1.87e-06 4.78e-06 7.4e-07 2.68e-06 1.6e-06 3.76e-06 3.08e-06 1.99e-06 7.12e-08 3.48e-07 1.52e-06 1.54e-06 9.6e-07 7.3e-07 3.84e-07 3.5e-07 4.25e-08 2.89e-07 9.93e-06 3.24e-06 1.61e-07 3.91e-07 3.28e-07 2.28e-07 1.22e-08 5.61e-08
ENSG00000259943 AL050341.2 472717 4e-06 4.48e-06 6.93e-07 1.76e-06 5.79e-07 8.48e-07 2.43e-06 2.62e-07 1.72e-06 4.19e-07 2.56e-06 1.26e-06 3.48e-06 1.49e-06 1.37e-06 1.21e-06 1.19e-06 1.59e-06 8.34e-07 5.23e-07 6.24e-07 3.51e-06 1.4e-06 1.03e-06 3.46e-06 3.75e-07 1.52e-06 1e-06 1.81e-06 1.76e-06 7.64e-07 5.4e-08 2.3e-07 1.9e-06 9.93e-07 6.58e-07 7.3e-07 2.97e-07 1.24e-07 2.28e-08 1.2e-07 6.25e-06 2.48e-06 1.6e-07 2.24e-07 2.93e-07 1.71e-07 3.04e-09 4.72e-08
ENSG00000272145 NFYC-AS1 38618 7.37e-05 3.29e-05 3.99e-06 4.3e-06 2.48e-06 6.19e-06 3.03e-05 9.99e-07 9.95e-06 4.22e-06 1.45e-05 5.28e-06 2.99e-05 4.48e-06 6.04e-06 9e-06 6.38e-06 9.78e-06 1.87e-06 2.27e-06 5.81e-06 2.42e-05 1.4e-05 2.84e-06 2.11e-05 2.58e-06 7.74e-06 4.08e-06 1.95e-05 7.92e-06 6.37e-06 4.18e-07 8.87e-07 2.86e-06 3.69e-06 1.7e-06 1.1e-06 1.85e-06 8.84e-07 7.73e-07 6.35e-07 9.26e-05 3.74e-06 1.63e-07 7.12e-07 1.68e-06 1.08e-06 2.7e-07 3.43e-07