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Genes within 1Mb (chr1:40676025:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -566129 sc-eQTL 2.95e-01 -0.228 0.218 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 792514 sc-eQTL 7.87e-01 -0.0566 0.209 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 358212 sc-eQTL 8.16e-01 -0.0375 0.161 0.05 CD4_CTL L2
ENSG00000066136 NFYC -15623 sc-eQTL 1.92e-01 0.288 0.22 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 331175 sc-eQTL 3.36e-01 -0.138 0.143 0.05 CD4_CTL L2
ENSG00000084072 PPIE 983843 sc-eQTL 2.80e-01 -0.236 0.218 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 417789 sc-eQTL 1.21e-01 0.339 0.217 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 984540 sc-eQTL 3.47e-01 -0.179 0.19 0.05 CD4_CTL L2
ENSG00000117000 RLF 514638 sc-eQTL 4.33e-02 -0.423 0.208 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 144452 sc-eQTL 5.26e-01 0.126 0.198 0.05 CD4_CTL L2
ENSG00000131236 CAP1 635792 sc-eQTL 9.71e-01 0.00522 0.142 0.05 CD4_CTL L2
ENSG00000131238 PPT1 578298 sc-eQTL 4.40e-01 0.17 0.22 0.05 CD4_CTL L2
ENSG00000164002 EXO5 167284 sc-eQTL 2.05e-01 0.262 0.206 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -303663 sc-eQTL 2.11e-02 0.465 0.2 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -186338 sc-eQTL 4.89e-01 -0.12 0.174 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B 225923 sc-eQTL 4.43e-01 0.144 0.187 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 198735 sc-eQTL 7.00e-01 0.0785 0.203 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 418058 sc-eQTL 3.94e-01 0.169 0.198 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -16041 sc-eQTL 6.32e-01 -0.0993 0.207 0.05 CD4_CTL L2
ENSG00000010803 SCMH1 -566129 sc-eQTL 6.91e-01 0.0879 0.221 0.051 CD8_TCM L2
ENSG00000043514 TRIT1 792514 sc-eQTL 6.04e-01 0.109 0.209 0.051 CD8_TCM L2
ENSG00000066136 NFYC -15623 sc-eQTL 9.31e-01 -0.0192 0.221 0.051 CD8_TCM L2
ENSG00000084070 SMAP2 331175 sc-eQTL 5.42e-01 -0.0812 0.133 0.051 CD8_TCM L2
ENSG00000084072 PPIE 983843 sc-eQTL 6.13e-01 0.1 0.198 0.051 CD8_TCM L2
ENSG00000084073 ZMPSTE24 417789 sc-eQTL 5.12e-01 -0.15 0.229 0.051 CD8_TCM L2
ENSG00000116983 HPCAL4 984540 sc-eQTL 2.22e-01 0.23 0.187 0.051 CD8_TCM L2
ENSG00000117000 RLF 514638 sc-eQTL 7.85e-01 0.0442 0.161 0.051 CD8_TCM L2
ENSG00000117010 ZNF684 144452 sc-eQTL 2.62e-01 -0.235 0.209 0.051 CD8_TCM L2
ENSG00000131236 CAP1 635792 sc-eQTL 8.44e-01 0.0291 0.148 0.051 CD8_TCM L2
ENSG00000131238 PPT1 578298 sc-eQTL 4.49e-01 0.173 0.229 0.051 CD8_TCM L2
ENSG00000164002 EXO5 167284 sc-eQTL 5.87e-01 -0.116 0.213 0.051 CD8_TCM L2
ENSG00000171793 CTPS1 -303663 sc-eQTL 4.90e-01 -0.132 0.191 0.051 CD8_TCM L2
ENSG00000179862 CITED4 -186338 sc-eQTL 1.39e-01 -0.241 0.162 0.051 CD8_TCM L2
ENSG00000187801 ZFP69B 225923 sc-eQTL 9.96e-01 -0.000907 0.201 0.051 CD8_TCM L2
ENSG00000187815 ZFP69 198735 sc-eQTL 7.58e-01 -0.0624 0.202 0.051 CD8_TCM L2
ENSG00000259943 AL050341.2 418058 sc-eQTL 5.74e-01 -0.121 0.214 0.051 CD8_TCM L2
ENSG00000272145 NFYC-AS1 -16041 sc-eQTL 8.10e-01 -0.0484 0.201 0.051 CD8_TCM L2
ENSG00000010803 SCMH1 -566129 sc-eQTL 1.33e-01 -0.29 0.192 0.05 Pro_T L2
ENSG00000043514 TRIT1 792514 sc-eQTL 8.31e-01 -0.0429 0.2 0.05 Pro_T L2
ENSG00000066136 NFYC -15623 sc-eQTL 5.61e-01 -0.108 0.185 0.05 Pro_T L2
ENSG00000084070 SMAP2 331175 sc-eQTL 2.71e-01 -0.175 0.159 0.05 Pro_T L2
ENSG00000084072 PPIE 983843 sc-eQTL 2.83e-01 -0.198 0.184 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 417789 sc-eQTL 4.09e-03 -0.449 0.155 0.05 Pro_T L2
ENSG00000116985 BMP8B 887160 sc-eQTL 5.73e-01 0.0661 0.117 0.05 Pro_T L2
ENSG00000117000 RLF 514638 sc-eQTL 3.01e-01 0.198 0.191 0.05 Pro_T L2
ENSG00000117010 ZNF684 144452 sc-eQTL 8.94e-01 -0.0255 0.191 0.05 Pro_T L2
ENSG00000131236 CAP1 635792 sc-eQTL 1.88e-01 0.202 0.153 0.05 Pro_T L2
ENSG00000131238 PPT1 578298 sc-eQTL 8.68e-02 -0.295 0.172 0.05 Pro_T L2
ENSG00000164002 EXO5 167284 sc-eQTL 2.08e-01 0.257 0.204 0.05 Pro_T L2
ENSG00000168389 MFSD2A 720913 sc-eQTL 2.19e-01 0.18 0.146 0.05 Pro_T L2
ENSG00000171793 CTPS1 -303663 sc-eQTL 2.37e-01 0.214 0.181 0.05 Pro_T L2
ENSG00000179862 CITED4 -186338 sc-eQTL 1.67e-01 -0.235 0.17 0.05 Pro_T L2
ENSG00000187801 ZFP69B 225923 sc-eQTL 2.97e-01 -0.176 0.169 0.05 Pro_T L2
ENSG00000187815 ZFP69 198735 sc-eQTL 2.77e-01 -0.209 0.192 0.05 Pro_T L2
ENSG00000198754 OXCT2 904677 sc-eQTL 1.69e-01 -0.136 0.0988 0.05 Pro_T L2
ENSG00000259943 AL050341.2 418058 sc-eQTL 1.35e-01 0.291 0.194 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -16041 sc-eQTL 4.05e-01 0.157 0.188 0.05 Pro_T L2
ENSG00000010803 SCMH1 -566129 sc-eQTL 2.73e-01 0.225 0.205 0.051 cDC L2
ENSG00000043514 TRIT1 792514 sc-eQTL 9.61e-01 0.00924 0.19 0.051 cDC L2
ENSG00000049089 COL9A2 358212 sc-eQTL 3.86e-01 -0.112 0.13 0.051 cDC L2
ENSG00000066136 NFYC -15623 sc-eQTL 4.88e-01 -0.153 0.22 0.051 cDC L2
ENSG00000084070 SMAP2 331175 sc-eQTL 7.62e-01 -0.0484 0.16 0.051 cDC L2
ENSG00000084072 PPIE 983843 sc-eQTL 8.75e-01 -0.033 0.209 0.051 cDC L2
ENSG00000084073 ZMPSTE24 417789 sc-eQTL 6.67e-01 -0.087 0.202 0.051 cDC L2
ENSG00000116990 MYCL 773769 sc-eQTL 7.62e-01 0.0451 0.149 0.051 cDC L2
ENSG00000117000 RLF 514638 sc-eQTL 9.73e-01 -0.00663 0.195 0.051 cDC L2
ENSG00000117010 ZNF684 144452 sc-eQTL 1.85e-01 -0.238 0.179 0.051 cDC L2
ENSG00000117016 RIMS3 10343 sc-eQTL 1.00e-01 0.24 0.145 0.051 cDC L2
ENSG00000131236 CAP1 635792 sc-eQTL 3.14e-01 -0.159 0.158 0.051 cDC L2
ENSG00000131238 PPT1 578298 sc-eQTL 9.67e-01 -0.00805 0.197 0.051 cDC L2
ENSG00000164002 EXO5 167284 sc-eQTL 1.55e-01 -0.26 0.182 0.051 cDC L2
ENSG00000168389 MFSD2A 720913 sc-eQTL 7.82e-01 0.0574 0.208 0.051 cDC L2
ENSG00000171793 CTPS1 -303663 sc-eQTL 4.17e-01 -0.162 0.199 0.051 cDC L2
ENSG00000179862 CITED4 -186338 sc-eQTL 1.31e-02 -0.443 0.177 0.051 cDC L2
ENSG00000187815 ZFP69 198735 sc-eQTL 2.46e-01 0.215 0.185 0.051 cDC L2
ENSG00000198754 OXCT2 904677 sc-eQTL 2.29e-01 -0.215 0.179 0.051 cDC L2
ENSG00000236546 AL033527.2 778280 sc-eQTL 5.93e-01 -0.0916 0.171 0.051 cDC L2
ENSG00000259943 AL050341.2 418058 sc-eQTL 3.06e-02 0.406 0.186 0.051 cDC L2
ENSG00000272145 NFYC-AS1 -16041 sc-eQTL 4.89e-01 -0.132 0.19 0.051 cDC L2
ENSG00000284719 AL033527.4 876603 sc-eQTL 3.31e-01 -0.169 0.174 0.051 cDC L2
ENSG00000010803 SCMH1 -566129 sc-eQTL 1.65e-01 -0.329 0.236 0.052 gdT L2
ENSG00000043514 TRIT1 792514 sc-eQTL 3.67e-03 0.649 0.22 0.052 gdT L2
ENSG00000066136 NFYC -15623 sc-eQTL 9.64e-02 -0.436 0.26 0.052 gdT L2
ENSG00000084070 SMAP2 331175 sc-eQTL 2.84e-01 -0.182 0.17 0.052 gdT L2
ENSG00000084072 PPIE 983843 sc-eQTL 6.68e-01 0.105 0.244 0.052 gdT L2
ENSG00000084073 ZMPSTE24 417789 sc-eQTL 2.94e-01 -0.26 0.247 0.052 gdT L2
ENSG00000116985 BMP8B 887160 sc-eQTL 8.68e-01 -0.0343 0.205 0.052 gdT L2
ENSG00000117000 RLF 514638 sc-eQTL 9.92e-01 -0.00216 0.204 0.052 gdT L2
ENSG00000117010 ZNF684 144452 sc-eQTL 3.01e-01 0.244 0.235 0.052 gdT L2
ENSG00000131236 CAP1 635792 sc-eQTL 3.48e-01 0.159 0.169 0.052 gdT L2
ENSG00000131238 PPT1 578298 sc-eQTL 5.28e-01 0.151 0.239 0.052 gdT L2
ENSG00000164002 EXO5 167284 sc-eQTL 8.53e-01 -0.0446 0.24 0.052 gdT L2
ENSG00000168389 MFSD2A 720913 sc-eQTL 8.75e-01 -0.0321 0.204 0.052 gdT L2
ENSG00000171793 CTPS1 -303663 sc-eQTL 4.57e-01 -0.166 0.223 0.052 gdT L2
ENSG00000179862 CITED4 -186338 sc-eQTL 7.58e-01 0.0704 0.229 0.052 gdT L2
ENSG00000187801 ZFP69B 225923 sc-eQTL 2.35e-02 0.502 0.219 0.052 gdT L2
ENSG00000187815 ZFP69 198735 sc-eQTL 9.60e-01 -0.0122 0.24 0.052 gdT L2
ENSG00000198754 OXCT2 904677 sc-eQTL 9.08e-01 -0.0195 0.169 0.052 gdT L2
ENSG00000259943 AL050341.2 418058 sc-eQTL 4.43e-01 0.177 0.23 0.052 gdT L2
ENSG00000272145 NFYC-AS1 -16041 sc-eQTL 4.05e-01 0.196 0.235 0.052 gdT L2
ENSG00000010803 SCMH1 -566129 sc-eQTL 7.60e-01 0.0626 0.205 0.051 intMono L2
ENSG00000043514 TRIT1 792514 sc-eQTL 4.88e-01 -0.137 0.197 0.051 intMono L2
ENSG00000049089 COL9A2 358212 sc-eQTL 3.79e-01 0.162 0.184 0.051 intMono L2
ENSG00000066136 NFYC -15623 sc-eQTL 3.70e-01 -0.192 0.214 0.051 intMono L2
ENSG00000084070 SMAP2 331175 sc-eQTL 4.51e-01 -0.106 0.14 0.051 intMono L2
ENSG00000084072 PPIE 983843 sc-eQTL 3.29e-01 0.215 0.22 0.051 intMono L2
ENSG00000084073 ZMPSTE24 417789 sc-eQTL 1.45e-01 0.292 0.2 0.051 intMono L2
ENSG00000116990 MYCL 773769 sc-eQTL 1.31e-01 0.237 0.156 0.051 intMono L2
ENSG00000117000 RLF 514638 sc-eQTL 3.75e-01 0.175 0.197 0.051 intMono L2
ENSG00000117010 ZNF684 144452 sc-eQTL 3.53e-01 0.185 0.199 0.051 intMono L2
ENSG00000131236 CAP1 635792 sc-eQTL 2.54e-01 -0.193 0.168 0.051 intMono L2
ENSG00000131238 PPT1 578298 sc-eQTL 2.68e-01 0.223 0.201 0.051 intMono L2
ENSG00000168389 MFSD2A 720913 sc-eQTL 9.37e-01 -0.0164 0.208 0.051 intMono L2
ENSG00000171793 CTPS1 -303663 sc-eQTL 1.04e-02 -0.536 0.207 0.051 intMono L2
ENSG00000179862 CITED4 -186338 sc-eQTL 8.35e-01 0.0363 0.174 0.051 intMono L2
ENSG00000187815 ZFP69 198735 sc-eQTL 6.06e-02 -0.358 0.19 0.051 intMono L2
ENSG00000259943 AL050341.2 418058 sc-eQTL 2.51e-01 0.199 0.173 0.051 intMono L2
ENSG00000272145 NFYC-AS1 -16041 sc-eQTL 2.45e-01 -0.234 0.201 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000010803 SCMH1 -566091 eQTL 0.0325 -0.0847 0.0396 0.0 0.0 0.0294
ENSG00000117013 KCNQ4 -107762 eQTL 7.29e-02 -0.18 0.1 0.00112 0.0 0.0294
ENSG00000117016 RIMS3 10343 eQTL 2.07e-03 -0.262 0.0849 0.00127 0.00153 0.0294
ENSG00000127129 EDN2 -808658 eQTL 0.045 -0.163 0.0811 0.0 0.0 0.0294
ENSG00000164002 EXO5 167284 eQTL 2.44e-06 -0.286 0.0603 0.0 0.0 0.0294
ENSG00000179862 CITED4 -186341 eQTL 0.0199 -0.18 0.077 0.0 0.0 0.0294
ENSG00000228477 AL663070.1 713345 eQTL 0.0216 -0.168 0.0729 0.00184 0.0 0.0294
ENSG00000238287 AL603839.3 167364 eQTL 5.15e-09 0.698 0.118 0.0 0.0 0.0294
ENSG00000260920 AL031985.3 211706 eQTL 0.00532 -0.194 0.0695 0.0 0.0 0.0294

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117016 RIMS3 10343 2.22e-05 2.43e-05 5.15e-06 1.35e-05 5.01e-06 1.2e-05 3.46e-05 3.8e-06 2.27e-05 1.19e-05 2.93e-05 1.26e-05 3.91e-05 1.07e-05 5.98e-06 1.39e-05 1.34e-05 2.05e-05 7.36e-06 6.5e-06 1.24e-05 2.5e-05 2.52e-05 8.8e-06 3.68e-05 6.74e-06 1.04e-05 9.99e-06 2.69e-05 2.77e-05 1.46e-05 1.58e-06 2.6e-06 7.1e-06 1.04e-05 5.77e-06 3.22e-06 3.18e-06 4.95e-06 3.4e-06 1.81e-06 2.87e-05 2.81e-06 4.38e-07 2.39e-06 3.47e-06 3.79e-06 1.57e-06 1.52e-06
ENSG00000164002 EXO5 167284 1.87e-06 2.3e-06 2.17e-07 1.56e-06 4.87e-07 7.48e-07 1.3e-06 4.28e-07 1.78e-06 6.94e-07 1.91e-06 1.36e-06 3.04e-06 8.9e-07 3.41e-07 1.06e-06 1.11e-06 1.32e-06 5.46e-07 7.37e-07 6.64e-07 1.96e-06 1.71e-06 9.37e-07 2.62e-06 9.28e-07 1.05e-06 1.07e-06 1.65e-06 1.61e-06 7.49e-07 2.43e-07 3.61e-07 8.53e-07 9.1e-07 5.92e-07 6.6e-07 3.35e-07 7.38e-07 2.17e-07 3.05e-07 2.7e-06 3.57e-07 1.33e-07 4.11e-07 3.08e-07 3.7e-07 1.69e-07 2.41e-07
ENSG00000228477 AL663070.1 713345 2.76e-07 1.34e-07 4.48e-08 1.89e-07 9.24e-08 9.48e-08 1.6e-07 5.53e-08 1.45e-07 5.67e-08 1.52e-07 1.01e-07 1.59e-07 7.37e-08 5.91e-08 7.49e-08 4.09e-08 1.33e-07 5.97e-08 4.78e-08 1.21e-07 1.24e-07 1.45e-07 2.79e-08 1.55e-07 1.21e-07 1.07e-07 9.74e-08 1.2e-07 1.05e-07 1.02e-07 3.08e-08 3.96e-08 8.23e-08 4.84e-08 3.53e-08 5.3e-08 8.63e-08 6.57e-08 4.47e-08 5.28e-08 1.46e-07 5.2e-08 1.86e-08 4.25e-08 1.84e-08 1.18e-07 3.78e-09 4.88e-08
ENSG00000260920 AL031985.3 211706 1.28e-06 1.13e-06 3.26e-07 1.27e-06 3.45e-07 5.98e-07 1.51e-06 3.71e-07 1.44e-06 6.14e-07 1.89e-06 8.15e-07 2.53e-06 2.95e-07 5.62e-07 9.24e-07 8.94e-07 7.78e-07 8.2e-07 5.27e-07 7.11e-07 1.72e-06 9.97e-07 5.58e-07 2.38e-06 5.67e-07 9.13e-07 8.53e-07 1.47e-06 1.2e-06 7.64e-07 1.92e-07 2.61e-07 6.19e-07 5.76e-07 4.62e-07 7.25e-07 2.38e-07 4.53e-07 2.97e-07 2.58e-07 1.64e-06 1.22e-07 6.49e-08 2.49e-07 1.37e-07 2.17e-07 5.32e-08 1.18e-07