Genes within 1Mb (chr1:40667593:G:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -574561 sc-eQTL 5.39e-01 0.187 0.303 0.052 PB L2
ENSG00000043514 TRIT1 784082 sc-eQTL 2.56e-01 0.308 0.27 0.052 PB L2
ENSG00000049089 COL9A2 349780 sc-eQTL 3.96e-01 -0.204 0.239 0.052 PB L2
ENSG00000066136 NFYC -24055 sc-eQTL 6.87e-01 -0.105 0.26 0.052 PB L2
ENSG00000084070 SMAP2 322743 sc-eQTL 4.45e-01 0.144 0.188 0.052 PB L2
ENSG00000084072 PPIE 975411 sc-eQTL 2.19e-01 0.3 0.243 0.052 PB L2
ENSG00000084073 ZMPSTE24 409357 sc-eQTL 9.86e-02 -0.365 0.219 0.052 PB L2
ENSG00000116985 BMP8B 878728 sc-eQTL 5.80e-01 -0.0945 0.17 0.052 PB L2
ENSG00000117000 RLF 506206 sc-eQTL 4.81e-01 -0.194 0.274 0.052 PB L2
ENSG00000117010 ZNF684 136020 sc-eQTL 6.95e-01 0.0897 0.228 0.052 PB L2
ENSG00000131236 CAP1 627360 sc-eQTL 9.45e-01 -0.0157 0.23 0.052 PB L2
ENSG00000131238 PPT1 569866 sc-eQTL 7.04e-01 0.0957 0.251 0.052 PB L2
ENSG00000164002 EXO5 158852 sc-eQTL 9.00e-01 0.0318 0.252 0.052 PB L2
ENSG00000171793 CTPS1 -312095 sc-eQTL 7.85e-01 0.0723 0.264 0.052 PB L2
ENSG00000179862 CITED4 -194770 sc-eQTL 7.97e-01 -0.0601 0.234 0.052 PB L2
ENSG00000187815 ZFP69 190303 sc-eQTL 1.41e-01 0.362 0.244 0.052 PB L2
ENSG00000198754 OXCT2 896245 sc-eQTL 5.79e-02 0.417 0.218 0.052 PB L2
ENSG00000259943 AL050341.2 409626 sc-eQTL 7.19e-01 -0.0938 0.26 0.052 PB L2
ENSG00000272145 NFYC-AS1 -24473 sc-eQTL 2.76e-01 -0.267 0.244 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -24096 eQTL 0.00037 -0.0841 0.0235 0.00287 0.0 0.0339
ENSG00000116981 NT5C1A 995555 pQTL 0.0467 -0.0667 0.0335 0.0 0.0 0.034
ENSG00000117010 ZNF684 136020 eQTL 2.87e-03 -0.132 0.0443 0.0 0.0 0.0339
ENSG00000117016 RIMS3 1911 eQTL 1.05e-02 0.2 0.078 0.0 0.0 0.0339
ENSG00000187815 ZFP69 190303 eQTL 0.001 -0.18 0.0544 0.0019 0.0 0.0339
ENSG00000238287 AL603839.3 158932 eQTL 0.000551 -0.38 0.11 0.0 0.0 0.0339
ENSG00000260920 AL031985.3 203274 eQTL 0.107 -0.103 0.0639 0.00112 0.0 0.0339
ENSG00000272145 NFYC-AS1 -24473 eQTL 0.0483 -0.177 0.0896 0.0 0.0 0.0339


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066136 NFYC -24096 1.6e-05 2.2e-05 3.99e-06 1.24e-05 3.26e-06 9.07e-06 2.58e-05 3.4e-06 1.85e-05 9.85e-06 2.55e-05 9.52e-06 3.55e-05 9.05e-06 5.26e-06 1.13e-05 1.03e-05 1.62e-05 5.69e-06 4.54e-06 9.16e-06 2.01e-05 1.9e-05 5.67e-06 2.97e-05 5.31e-06 8.36e-06 8.34e-06 1.95e-05 1.78e-05 1.31e-05 1.34e-06 1.91e-06 5.41e-06 8.57e-06 4.56e-06 2.18e-06 2.86e-06 3.21e-06 2.77e-06 1.67e-06 2.55e-05 2.67e-06 1.92e-07 1.87e-06 2.75e-06 3.4e-06 1.28e-06 9.89e-07
ENSG00000117010 ZNF684 136020 4.19e-06 5.05e-06 9.94e-07 2.63e-06 1.35e-06 1.47e-06 3.07e-06 9.76e-07 4.36e-06 2.43e-06 5.02e-06 3.56e-06 7.26e-06 2.11e-06 1.43e-06 3.71e-06 1.8e-06 3.49e-06 1.43e-06 1e-06 2.79e-06 4.6e-06 3.51e-06 1.71e-06 4.9e-06 1.35e-06 2.61e-06 1.73e-06 4.32e-06 4.1e-06 2.81e-06 4.51e-07 5.29e-07 1.92e-06 2.04e-06 1.18e-06 1.08e-06 4.36e-07 1.23e-06 3.42e-07 2.39e-07 5.69e-06 7.85e-07 1.81e-07 6.37e-07 3.75e-07 9.75e-07 4.43e-07 3.74e-07
ENSG00000127129 \N -817090 2.64e-07 1.19e-07 5.91e-08 1.8e-07 9.01e-08 9.87e-08 1.38e-07 5.49e-08 1.41e-07 4.4e-08 1.56e-07 7.88e-08 1.3e-07 6.38e-08 5.55e-08 7.17e-08 3.88e-08 1.21e-07 5.82e-08 4.07e-08 1.13e-07 1.26e-07 1.26e-07 4.16e-08 1.31e-07 1.19e-07 1.11e-07 9.36e-08 1.02e-07 1.1e-07 9.73e-08 3.94e-08 3.16e-08 8.49e-08 8.98e-08 3.62e-08 5.22e-08 8.93e-08 7.23e-08 3.55e-08 4.19e-08 1.35e-07 5.22e-08 7.51e-09 5.19e-08 1.67e-08 1.24e-07 3.86e-09 4.81e-08
ENSG00000171793 \N -311742 1.31e-06 9.25e-07 2.98e-07 3.63e-07 2.1e-07 3.2e-07 7.25e-07 1.78e-07 8.36e-07 3.09e-07 1.19e-06 5.45e-07 1.37e-06 2.57e-07 3.94e-07 5.87e-07 7.7e-07 5.55e-07 5.72e-07 4.36e-07 5.8e-07 7.21e-07 4.77e-07 3.93e-07 1.35e-06 2.41e-07 5.83e-07 5.33e-07 6.19e-07 1.03e-06 4.65e-07 1.82e-07 1.94e-07 3.79e-07 3.29e-07 4.59e-07 5.61e-07 2.54e-07 1.33e-07 9.67e-09 1.03e-07 1.06e-06 3.68e-07 4.13e-08 1.67e-07 5.38e-08 1.87e-07 8.8e-08 9.42e-08
ENSG00000187815 ZFP69 190303 1.87e-06 2.78e-06 6.91e-07 1.71e-06 4.67e-07 7.84e-07 1.31e-06 4.02e-07 1.68e-06 9.12e-07 2.21e-06 1.29e-06 3.58e-06 1.37e-06 5.41e-07 1.62e-06 1.34e-06 2.27e-06 1.29e-06 1.12e-06 1.39e-06 2.44e-06 1.71e-06 9.82e-07 2.59e-06 1.06e-06 1.22e-06 1.64e-06 1.73e-06 1.9e-06 1.67e-06 4.72e-07 5.24e-07 1.09e-06 8.99e-07 9.43e-07 9.08e-07 4.68e-07 7.83e-07 2.58e-07 3.03e-07 3.03e-06 3.65e-07 1.74e-07 3.63e-07 2.94e-07 8.02e-07 1.82e-07 1.54e-07
ENSG00000281207 \N -346997 9.39e-07 8.97e-07 2.99e-07 4.14e-07 1.11e-07 2.95e-07 6.06e-07 1.21e-07 5.3e-07 3.04e-07 1.02e-06 4.24e-07 9.79e-07 1.98e-07 2.57e-07 3.79e-07 5.64e-07 5.26e-07 4e-07 2.65e-07 3.49e-07 5.18e-07 3.77e-07 2.49e-07 8.09e-07 2.6e-07 4.25e-07 3.95e-07 3.99e-07 8.5e-07 3.81e-07 3.82e-08 9.79e-08 2.1e-07 3.47e-07 3.47e-07 4.12e-07 1.58e-07 8.61e-08 1.6e-08 5.56e-08 6.81e-07 1.68e-07 2.61e-08 1.73e-07 2.68e-08 1.68e-07 8.57e-08 5.63e-08