Genes within 1Mb (chr1:40659783:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -31906 eQTL 1.40e-02 -0.0239 0.0097 0.0 0.0 0.315
ENSG00000116981 NT5C1A 987745 pQTL 3.59e-02 0.0281 0.0134 0.0 0.0 0.322
ENSG00000116983 HPCAL4 968298 eQTL 3.85e-02 0.0327 0.0158 0.0 0.0 0.315
ENSG00000117013 KCNQ4 -124004 eQTL 6.12e-04 0.129 0.0375 0.00132 0.00159 0.315
ENSG00000117016 RIMS3 -5899 eQTL 8.58e-07 -0.157 0.0317 0.00579 0.0069 0.315
ENSG00000131236 CAP1 619550 eQTL 2.11e-02 -0.0223 0.00965 0.00149 0.0 0.315
ENSG00000171790 SLFNL1 -363454 eQTL 2.25e-02 0.0677 0.0296 0.0 0.0 0.315
ENSG00000187801 ZFP69B 209676 eQTL 8.25e-03 0.0765 0.0289 0.0 0.0 0.315
ENSG00000213172 AL031985.1 295017 eQTL 9.30e-03 0.0765 0.0293 0.00124 0.0 0.315
ENSG00000238287 AL603839.3 151122 eQTL 5.08e-06 0.206 0.0449 0.0 0.0 0.315
ENSG00000260920 AL031985.3 195464 eQTL 1.46e-03 0.0835 0.0261 0.0 0.0 0.315


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117016 RIMS3 -5899 3.81e-05 3.34e-05 6.39e-06 1.58e-05 6.02e-06 1.46e-05 4.66e-05 4.69e-06 3.23e-05 1.6e-05 3.92e-05 1.82e-05 4.89e-05 1.43e-05 7.14e-06 2e-05 1.84e-05 2.61e-05 7.94e-06 6.89e-06 1.6e-05 3.46e-05 3.3e-05 9.31e-06 4.56e-05 8.28e-06 1.47e-05 1.33e-05 3.31e-05 2.59e-05 2.08e-05 1.65e-06 2.61e-06 7.1e-06 1.19e-05 5.85e-06 3.11e-06 3.11e-06 4.8e-06 3.35e-06 1.75e-06 3.89e-05 3.74e-06 3.62e-07 2.59e-06 3.94e-06 4.11e-06 1.6e-06 1.5e-06
ENSG00000171790 SLFNL1 -363454 2.74e-07 1.3e-07 4.69e-08 1.89e-07 9.16e-08 9.91e-08 1.49e-07 5.33e-08 1.45e-07 5.42e-08 1.62e-07 8.55e-08 1.45e-07 6.76e-08 5.82e-08 7.17e-08 3.9e-08 1.21e-07 5.75e-08 4.95e-08 1.04e-07 1.28e-07 1.32e-07 3.68e-08 1.4e-07 1.16e-07 1.07e-07 9.74e-08 1.05e-07 1.12e-07 1.06e-07 5.08e-08 3.16e-08 8.72e-08 2.97e-08 3.95e-08 5.26e-08 9.36e-08 6.71e-08 5.24e-08 5.42e-08 1.31e-07 4.7e-08 1.55e-08 4.7e-08 1.87e-08 1.19e-07 1.88e-09 5.09e-08
ENSG00000187801 ZFP69B 209676 1.31e-06 8.81e-07 1.24e-07 3.89e-07 1.04e-07 3.69e-07 7.1e-07 1.4e-07 7.56e-07 3.05e-07 1.09e-06 5.22e-07 1.21e-06 2.09e-07 4.33e-07 2.45e-07 4.87e-07 4.31e-07 2.87e-07 4.95e-07 2.38e-07 5.86e-07 3.87e-07 2.7e-07 1.36e-06 2.54e-07 4.91e-07 3.88e-07 4.76e-07 5.67e-07 4.65e-07 2.56e-07 4.35e-08 2.84e-07 4.25e-07 1.54e-07 6.1e-07 1.13e-07 1.1e-07 8.82e-08 1.43e-07 5.87e-07 5.78e-08 5.72e-08 1.81e-07 4.23e-08 1.04e-07 3.84e-08 5.54e-08
ENSG00000260920 AL031985.3 195464 1.26e-06 9.23e-07 1.63e-07 7.35e-07 1.4e-07 4.57e-07 1.02e-06 2.03e-07 1.11e-06 3.8e-07 1.32e-06 5.77e-07 1.56e-06 2.54e-07 5.79e-07 3.57e-07 6.98e-07 5.2e-07 4e-07 7.04e-07 2.62e-07 9.92e-07 4.77e-07 3.93e-07 1.71e-06 2.64e-07 6.21e-07 5.29e-07 6.84e-07 7.79e-07 5.45e-07 2.62e-07 5.37e-08 4.83e-07 5.63e-07 3e-07 6.77e-07 1.42e-07 1.49e-07 2.48e-07 2.36e-07 7.54e-07 6.28e-08 9.66e-08 1.85e-07 7.29e-08 1.27e-07 8.49e-08 5.93e-08