Genes within 1Mb (chr1:40651500:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -40189 eQTL 3.55e-08 0.0613 0.011 0.0 0.0 0.186
ENSG00000116983 HPCAL4 960015 eQTL 2.50e-02 -0.0409 0.0182 0.00123 0.0 0.186
ENSG00000116985 BMP8B 862635 eQTL 2.96e-02 -0.0772 0.0354 0.0 0.0 0.186
ENSG00000117016 RIMS3 -14182 eQTL 2.03e-04 0.137 0.0368 0.00124 0.00574 0.186
ENSG00000164002 EXO5 142759 eQTL 2.29e-09 -0.157 0.026 0.0 0.0 0.186
ENSG00000171790 SLFNL1 -371737 eQTL 2.57e-03 -0.103 0.034 0.00119 0.00111 0.186
ENSG00000187801 ZFP69B 201393 eQTL 2.03e-04 -0.124 0.0332 0.00141 0.0 0.186
ENSG00000238287 AL603839.3 142839 eQTL 4.26e-20 0.47 0.05 0.0 0.0 0.186
ENSG00000259943 AL050341.2 393533 eQTL 7.25e-03 -0.0654 0.0243 0.0 0.0 0.186
ENSG00000260920 AL031985.3 187181 eQTL 3.88e-03 -0.0873 0.0301 0.0 0.0 0.186
ENSG00000272145 NFYC-AS1 -40566 eQTL 2.04e-02 -0.0984 0.0424 0.0 0.0 0.186


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 \N 334214 8.85e-07 6.78e-07 1e-07 3.95e-07 9.93e-08 2.08e-07 5.54e-07 9.07e-08 4.3e-07 2.16e-07 7.32e-07 3.36e-07 9.97e-07 1.6e-07 1.32e-07 2.18e-07 2.98e-07 3.82e-07 2.17e-07 9.17e-08 1.8e-07 3.92e-07 3.3e-07 7.94e-08 9.15e-07 2.2e-07 3.1e-07 2.44e-07 3.27e-07 5.82e-07 3.32e-07 6.78e-08 5.48e-08 1.17e-07 3.04e-07 6.18e-08 1.15e-07 5.53e-08 4.44e-08 7.39e-08 5.1e-08 9.14e-07 2.71e-08 5.58e-09 8.45e-08 1.81e-08 9.25e-08 0.0 5.58e-08
ENSG00000066136 NFYC -40189 9.82e-06 1.21e-05 1.44e-06 6.54e-06 2.11e-06 4.15e-06 1.03e-05 1.84e-06 9.4e-06 5.08e-06 1.2e-05 4.99e-06 1.62e-05 3.63e-06 2.2e-06 6.54e-06 4.44e-06 7.18e-06 2.66e-06 2.85e-06 4.61e-06 9.54e-06 7.23e-06 2.68e-06 1.43e-05 2.79e-06 4.86e-06 3.74e-06 9.94e-06 9.11e-06 5.15e-06 8.07e-07 1.07e-06 2.86e-06 4.02e-06 2.36e-06 1.44e-06 1.49e-06 1.57e-06 8.66e-07 6.45e-07 1.48e-05 1.09e-06 1.59e-07 8.18e-07 1.32e-06 9.2e-07 7.43e-07 4.64e-07
ENSG00000116983 HPCAL4 960015 2.66e-07 1.01e-07 3.35e-08 1.76e-07 9.91e-08 9.36e-08 1.42e-07 5.21e-08 1.42e-07 4.24e-08 1.63e-07 8.02e-08 1.26e-07 6.21e-08 4.84e-08 8.01e-08 5.1e-08 1.07e-07 5.2e-08 3.59e-08 1.06e-07 1.33e-07 1.29e-07 4.98e-08 1.29e-07 1.13e-07 1.1e-07 8.71e-08 9.97e-08 1.1e-07 9.58e-08 3.82e-08 2.74e-08 8.02e-08 9.27e-08 4.02e-08 4.91e-08 8.91e-08 8.19e-08 3.09e-08 3.07e-08 1.37e-07 3.91e-08 3.72e-08 8.79e-08 1.74e-08 1.35e-07 4.6e-09 4.74e-08
ENSG00000117016 RIMS3 -14182 1.57e-05 2.3e-05 3.55e-06 1.26e-05 2.57e-06 7.51e-06 2.34e-05 3.17e-06 1.77e-05 8.28e-06 2.23e-05 8.05e-06 3.42e-05 7.61e-06 4.72e-06 1.02e-05 9.14e-06 1.49e-05 4.82e-06 4.45e-06 7.89e-06 1.78e-05 1.77e-05 4.73e-06 2.91e-05 5.01e-06 8e-06 7.57e-06 1.91e-05 1.74e-05 1.19e-05 1.19e-06 1.42e-06 4.35e-06 7.51e-06 3.93e-06 1.79e-06 2.38e-06 3.24e-06 1.84e-06 9.79e-07 2.81e-05 2.25e-06 3.05e-07 9.39e-07 2.49e-06 2.5e-06 7.39e-07 1.06e-06
ENSG00000164002 EXO5 142759 3e-06 3.17e-06 3.09e-07 2.07e-06 5.1e-07 8.27e-07 1.8e-06 4.39e-07 1.83e-06 8.25e-07 2.47e-06 1.38e-06 3.68e-06 1.4e-06 4.38e-07 1.48e-06 1.14e-06 2.17e-06 9.83e-07 1.04e-06 6.7e-07 3.01e-06 2.16e-06 8.09e-07 3.89e-06 1.05e-06 1.34e-06 1.44e-06 1.93e-06 1.89e-06 1.64e-06 2.31e-07 4e-07 8.18e-07 9.55e-07 6.3e-07 7.55e-07 3.34e-07 7.16e-07 2.03e-07 2.67e-07 3.99e-06 3.74e-07 1.81e-07 3.24e-07 3.21e-07 2.74e-07 4.85e-08 2.97e-07
ENSG00000179862 \N -210866 1.27e-06 1.4e-06 3.14e-07 1.2e-06 2.53e-07 6.02e-07 1.61e-06 3.46e-07 1.52e-06 4.66e-07 1.89e-06 6.43e-07 2.49e-06 2.79e-07 4.61e-07 9.16e-07 8.94e-07 7e-07 8.67e-07 6.84e-07 4.57e-07 1.72e-06 8.31e-07 5.76e-07 2.28e-06 3.71e-07 9.3e-07 7.03e-07 1.31e-06 1.21e-06 7.26e-07 5.02e-08 2.19e-07 5.18e-07 5.93e-07 4.6e-07 5.17e-07 1.45e-07 3.43e-07 4.25e-08 1.15e-07 2.13e-06 8.26e-08 1.3e-07 1.81e-07 1.02e-07 1.71e-07 5.73e-08 8.44e-08
ENSG00000260920 AL031985.3 187181 1.59e-06 2.15e-06 2.95e-07 1.25e-06 3.6e-07 6.28e-07 1.46e-06 3.98e-07 1.75e-06 5.86e-07 2.09e-06 8.26e-07 2.68e-06 5.06e-07 5.65e-07 9.72e-07 9.95e-07 1.12e-06 5.78e-07 5.75e-07 7.54e-07 1.97e-06 1.12e-06 6.51e-07 2.48e-06 5.53e-07 9.78e-07 8.87e-07 1.59e-06 1.24e-06 8.27e-07 1.85e-07 2.57e-07 6.86e-07 5.15e-07 4.62e-07 7.49e-07 1.92e-07 4.82e-07 2.44e-07 1.85e-07 2.89e-06 1.66e-07 1.74e-07 1.81e-07 1.2e-07 2.38e-07 8.35e-08 1.46e-07
ENSG00000272145 NFYC-AS1 -40566 9.72e-06 1.2e-05 1.43e-06 6.53e-06 2.13e-06 4.14e-06 1.04e-05 1.8e-06 9.39e-06 5.14e-06 1.19e-05 4.9e-06 1.6e-05 3.65e-06 2.12e-06 6.66e-06 4.26e-06 7.17e-06 2.7e-06 2.78e-06 4.67e-06 9.51e-06 7.22e-06 2.64e-06 1.42e-05 2.8e-06 4.82e-06 3.69e-06 9.77e-06 8.96e-06 5.1e-06 7.78e-07 1.02e-06 2.85e-06 3.99e-06 2.31e-06 1.41e-06 1.46e-06 1.59e-06 8.68e-07 6.6e-07 1.45e-05 1.06e-06 1.47e-07 7.72e-07 1.3e-06 9.08e-07 7.43e-07 4.65e-07