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Genes within 1Mb (chr1:40415369:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -826785 sc-eQTL 3.81e-01 -0.169 0.192 0.949 B_Activated L2
ENSG00000043514 TRIT1 531858 sc-eQTL 5.33e-01 0.118 0.189 0.949 B_Activated L2
ENSG00000049089 COL9A2 97556 sc-eQTL 3.61e-01 0.173 0.189 0.949 B_Activated L2
ENSG00000066136 NFYC -276279 sc-eQTL 4.43e-01 0.163 0.213 0.949 B_Activated L2
ENSG00000084070 SMAP2 70519 sc-eQTL 6.14e-01 0.0542 0.107 0.949 B_Activated L2
ENSG00000084072 PPIE 723187 sc-eQTL 4.53e-01 0.144 0.191 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 157133 sc-eQTL 4.13e-01 0.167 0.203 0.949 B_Activated L2
ENSG00000090621 PABPC4 838579 sc-eQTL 6.89e-03 0.418 0.153 0.949 B_Activated L2
ENSG00000116985 BMP8B 626504 sc-eQTL 9.50e-01 -0.00699 0.111 0.949 B_Activated L2
ENSG00000117000 RLF 253982 sc-eQTL 3.69e-01 0.17 0.188 0.949 B_Activated L2
ENSG00000117010 ZNF684 -116204 sc-eQTL 3.59e-01 -0.167 0.182 0.949 B_Activated L2
ENSG00000131236 CAP1 375136 sc-eQTL 5.18e-01 -0.113 0.174 0.949 B_Activated L2
ENSG00000131238 PPT1 317642 sc-eQTL 7.07e-01 0.0807 0.215 0.949 B_Activated L2
ENSG00000164002 EXO5 -93372 sc-eQTL 6.03e-02 0.306 0.162 0.949 B_Activated L2
ENSG00000171793 CTPS1 -564319 sc-eQTL 6.60e-01 -0.0846 0.192 0.949 B_Activated L2
ENSG00000179862 CITED4 -446994 sc-eQTL 8.23e-01 0.0354 0.158 0.949 B_Activated L2
ENSG00000187815 ZFP69 -61921 sc-eQTL 5.84e-02 -0.328 0.172 0.949 B_Activated L2
ENSG00000198754 OXCT2 644021 sc-eQTL 5.69e-01 0.0981 0.172 0.949 B_Activated L2
ENSG00000259943 AL050341.2 157402 sc-eQTL 8.74e-01 0.0262 0.165 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -276697 sc-eQTL 9.90e-01 -0.00215 0.179 0.949 B_Activated L2
ENSG00000010803 SCMH1 -826785 sc-eQTL 1.64e-01 0.317 0.226 0.922 PB L2
ENSG00000043514 TRIT1 531858 sc-eQTL 6.51e-01 0.0928 0.205 0.922 PB L2
ENSG00000049089 COL9A2 97556 sc-eQTL 6.55e-01 -0.0809 0.18 0.922 PB L2
ENSG00000066136 NFYC -276279 sc-eQTL 3.44e-01 -0.186 0.195 0.922 PB L2
ENSG00000084070 SMAP2 70519 sc-eQTL 4.76e-02 -0.28 0.14 0.922 PB L2
ENSG00000084072 PPIE 723187 sc-eQTL 9.53e-01 -0.0109 0.184 0.922 PB L2
ENSG00000084073 ZMPSTE24 157133 sc-eQTL 9.54e-01 -0.00964 0.167 0.922 PB L2
ENSG00000090621 PABPC4 838579 sc-eQTL 3.11e-01 -0.113 0.111 0.922 PB L2
ENSG00000116985 BMP8B 626504 sc-eQTL 2.10e-01 0.161 0.128 0.922 PB L2
ENSG00000117000 RLF 253982 sc-eQTL 6.68e-01 -0.0889 0.206 0.922 PB L2
ENSG00000117010 ZNF684 -116204 sc-eQTL 4.08e-01 0.143 0.171 0.922 PB L2
ENSG00000131236 CAP1 375136 sc-eQTL 2.31e-01 -0.207 0.172 0.922 PB L2
ENSG00000131238 PPT1 317642 sc-eQTL 7.36e-01 0.0638 0.189 0.922 PB L2
ENSG00000164002 EXO5 -93372 sc-eQTL 6.10e-01 -0.0969 0.189 0.922 PB L2
ENSG00000171793 CTPS1 -564319 sc-eQTL 1.71e-01 0.272 0.197 0.922 PB L2
ENSG00000179862 CITED4 -446994 sc-eQTL 6.57e-01 0.0782 0.176 0.922 PB L2
ENSG00000187815 ZFP69 -61921 sc-eQTL 4.49e-01 -0.141 0.185 0.922 PB L2
ENSG00000198754 OXCT2 644021 sc-eQTL 7.43e-02 -0.296 0.164 0.922 PB L2
ENSG00000259943 AL050341.2 157402 sc-eQTL 7.52e-01 -0.0621 0.196 0.922 PB L2
ENSG00000272145 NFYC-AS1 -276697 sc-eQTL 3.36e-01 -0.178 0.184 0.922 PB L2
ENSG00000010803 SCMH1 -826785 sc-eQTL 3.75e-01 0.161 0.181 0.95 Pro_T L2
ENSG00000043514 TRIT1 531858 sc-eQTL 3.10e-01 0.191 0.187 0.95 Pro_T L2
ENSG00000066136 NFYC -276279 sc-eQTL 9.36e-01 0.0141 0.174 0.95 Pro_T L2
ENSG00000084070 SMAP2 70519 sc-eQTL 3.84e-02 -0.308 0.148 0.95 Pro_T L2
ENSG00000084072 PPIE 723187 sc-eQTL 3.10e-01 -0.175 0.172 0.95 Pro_T L2
ENSG00000084073 ZMPSTE24 157133 sc-eQTL 2.21e-01 0.181 0.147 0.95 Pro_T L2
ENSG00000090621 PABPC4 838579 sc-eQTL 4.29e-01 -0.105 0.132 0.95 Pro_T L2
ENSG00000116985 BMP8B 626504 sc-eQTL 1.07e-01 0.176 0.109 0.95 Pro_T L2
ENSG00000117000 RLF 253982 sc-eQTL 5.05e-01 0.12 0.18 0.95 Pro_T L2
ENSG00000117010 ZNF684 -116204 sc-eQTL 4.52e-01 -0.135 0.179 0.95 Pro_T L2
ENSG00000131236 CAP1 375136 sc-eQTL 3.18e-01 0.144 0.144 0.95 Pro_T L2
ENSG00000131238 PPT1 317642 sc-eQTL 8.38e-01 0.0332 0.162 0.95 Pro_T L2
ENSG00000164002 EXO5 -93372 sc-eQTL 1.92e-01 0.25 0.191 0.95 Pro_T L2
ENSG00000168389 MFSD2A 460257 sc-eQTL 5.88e-01 0.0744 0.137 0.95 Pro_T L2
ENSG00000171793 CTPS1 -564319 sc-eQTL 5.66e-01 -0.0976 0.17 0.95 Pro_T L2
ENSG00000179862 CITED4 -446994 sc-eQTL 5.09e-01 -0.106 0.16 0.95 Pro_T L2
ENSG00000187801 ZFP69B -34733 sc-eQTL 7.85e-01 0.0433 0.159 0.95 Pro_T L2
ENSG00000187815 ZFP69 -61921 sc-eQTL 3.52e-01 -0.168 0.18 0.95 Pro_T L2
ENSG00000198754 OXCT2 644021 sc-eQTL 9.99e-01 -6.84e-05 0.0931 0.95 Pro_T L2
ENSG00000259943 AL050341.2 157402 sc-eQTL 1.15e-01 -0.288 0.182 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 -276697 sc-eQTL 2.54e-01 0.202 0.176 0.95 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 98083 eQTL 0.000376 0.157 0.0439 0.00799 0.00685 0.0653
ENSG00000164002 EXO5 -93372 eQTL 1.36e-07 0.221 0.0416 0.00126 0.0 0.0653
ENSG00000171790 SLFNL1 -607868 eQTL 0.0464 0.109 0.0545 0.0 0.0 0.0653
ENSG00000187801 ZFP69B -34738 eQTL 1.2e-06 0.257 0.0526 0.0 0.0 0.0653
ENSG00000213172 AL031985.1 50603 eQTL 0.000591 0.185 0.0538 0.0 0.0 0.0653
ENSG00000238287 AL603839.3 -93292 eQTL 0.00279 -0.249 0.083 0.0 0.0 0.0653
ENSG00000259943 AL050341.2 157402 eQTL 0.0049 0.109 0.0387 0.0 0.0 0.0653
ENSG00000260920 AL031985.3 -48950 eQTL 7.84e-05 0.19 0.0479 0.0 0.0 0.0653

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 98083 0.000202 2.56e-06 7.43e-07 1.44e-06 2.58e-07 4.21e-06 2.47e-06 3.3e-07 1.75e-06 6.69e-07 2.07e-06 7.53e-07 3.07e-06 1.35e-06 8.13e-07 1.62e-06 1.02e-06 2.17e-06 9.86e-07 6.21e-07 7e-07 3.17e-06 2.74e-06 6.29e-07 2.44e-06 3.75e-07 1.01e-06 7.25e-07 2.76e-06 1.39e-06 1.08e-06 5.62e-08 2.77e-07 6.17e-07 5.99e-07 4.23e-07 1.64e-07 3.63e-07 4.73e-07 2.65e-08 2.18e-07 3.87e-06 6.29e-07 1.1e-08 1.93e-07 2.73e-07 2.41e-07 3.09e-09 1.16e-07
ENSG00000117010 \N -116204 0.000162 1.53e-06 3.09e-07 1.26e-06 9.77e-08 2.48e-06 1.29e-06 1.73e-07 1.49e-06 3.83e-07 1.5e-06 5.7e-07 2.46e-06 4.66e-07 4.52e-07 1.02e-06 8.43e-07 1.42e-06 5.83e-07 5.57e-07 6.17e-07 1.96e-06 1.68e-06 5.86e-07 1.94e-06 2.38e-07 8.75e-07 3.62e-07 1.65e-06 1.29e-06 8.06e-07 5.54e-08 2.29e-07 6.86e-07 6.22e-07 3.32e-07 1.09e-07 2.88e-07 3.2e-07 8.3e-08 1.15e-07 2.52e-06 4.18e-07 1.2e-08 1.16e-07 1.71e-07 1.43e-07 0.0 6.58e-08
ENSG00000164002 EXO5 -93372 0.000212 3.14e-06 9.13e-07 1.49e-06 2.95e-07 4.22e-06 2.42e-06 3.28e-07 1.78e-06 7.18e-07 1.93e-06 8.56e-07 3.44e-06 1.43e-06 9.11e-07 1.88e-06 1.08e-06 2.38e-06 1.36e-06 5.13e-07 6.39e-07 3.46e-06 3.36e-06 8.04e-07 2.4e-06 4.27e-07 1.16e-06 6.88e-07 3.55e-06 1.63e-06 1.53e-06 6.92e-08 3.27e-07 7.27e-07 6.8e-07 4.36e-07 1.91e-07 3.59e-07 5.09e-07 2.24e-08 2.75e-07 3.99e-06 6.52e-07 1.43e-08 1.73e-07 3.08e-07 2.18e-07 3.35e-09 1.58e-07
ENSG00000168389 \N 460257 4.37e-07 1.08e-07 3.41e-08 1.67e-07 1.03e-07 9.87e-08 1.36e-07 5.29e-08 1.32e-07 3.99e-08 1.61e-07 7.49e-08 1.2e-07 6.07e-08 4.77e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.88e-08 1.03e-07 1.31e-07 1.31e-07 5.19e-08 1.33e-07 1.03e-07 1.12e-07 8.27e-08 1.05e-07 1.09e-07 9.5e-08 3.29e-08 2.75e-08 8e-08 9.88e-08 4.23e-08 4.7e-08 8.28e-08 8.44e-08 3.96e-08 3.07e-08 1.39e-07 4.23e-08 0.0 1.15e-07 1.83e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000187801 ZFP69B -34738 0.000259 1.29e-05 2.64e-06 4e-06 1.63e-06 1.87e-05 1.46e-05 1.03e-06 9.16e-06 4.38e-06 9.35e-06 2.94e-06 1.36e-05 3.95e-06 3.46e-06 7.43e-06 4.1e-06 9.66e-06 2.55e-06 1.54e-06 4.6e-06 1.27e-05 1.03e-05 2.76e-06 9.99e-06 2.08e-06 4.63e-06 2.13e-06 1.37e-05 7.9e-06 5.45e-06 5.93e-07 9.52e-07 2.82e-06 1.96e-06 9.71e-07 9.08e-07 4.57e-07 9.19e-07 5.21e-07 4.42e-07 1.88e-05 2.67e-06 1.93e-08 7.7e-07 3.75e-07 9.03e-07 2.29e-07 5.28e-07
ENSG00000213172 AL031985.1 50603 0.000265 9.6e-06 1.79e-06 3.21e-06 8.58e-07 1.39e-05 1.02e-05 8.7e-07 4.79e-06 2.81e-06 6.14e-06 3.5e-06 9.88e-06 3.8e-06 2.02e-06 6.48e-06 3e-06 6.33e-06 1.84e-06 9.7e-07 2.8e-06 9.17e-06 6.93e-06 1.55e-06 7.14e-06 1.35e-06 2.86e-06 1.72e-06 9.12e-06 5.28e-06 3.51e-06 3.03e-07 5.02e-07 1.69e-06 1.92e-06 9.62e-07 7.33e-07 4.67e-07 1.08e-06 3.98e-07 1.82e-07 1.31e-05 2.36e-06 1.52e-08 3.64e-07 3.14e-07 9.76e-07 6.02e-08 2.87e-07
ENSG00000260920 AL031985.3 -48950 0.000265 9.29e-06 1.87e-06 3.42e-06 8.7e-07 1.46e-05 1.04e-05 8.45e-07 4.96e-06 2.82e-06 6.6e-06 3.43e-06 1.01e-05 4.03e-06 2.18e-06 6.54e-06 3.53e-06 6.61e-06 1.99e-06 9.5e-07 2.74e-06 9.61e-06 7.06e-06 1.7e-06 7.58e-06 1.33e-06 3.09e-06 1.69e-06 9.56e-06 5.51e-06 3.74e-06 2.48e-07 5.37e-07 1.64e-06 2.08e-06 8.95e-07 7.44e-07 4.37e-07 1.06e-06 3.63e-07 1.52e-07 1.35e-05 2.39e-06 1.04e-08 3.97e-07 3.65e-07 1.05e-06 1.05e-07 3.21e-07