logo

Genes within 1Mb (chr1:40412836:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -829318 sc-eQTL 3.81e-01 -0.169 0.192 0.949 B_Activated L2
ENSG00000043514 TRIT1 529325 sc-eQTL 5.33e-01 0.118 0.189 0.949 B_Activated L2
ENSG00000049089 COL9A2 95023 sc-eQTL 3.61e-01 0.173 0.189 0.949 B_Activated L2
ENSG00000066136 NFYC -278812 sc-eQTL 4.43e-01 0.163 0.213 0.949 B_Activated L2
ENSG00000084070 SMAP2 67986 sc-eQTL 6.14e-01 0.0542 0.107 0.949 B_Activated L2
ENSG00000084072 PPIE 720654 sc-eQTL 4.53e-01 0.144 0.191 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 154600 sc-eQTL 4.13e-01 0.167 0.203 0.949 B_Activated L2
ENSG00000090621 PABPC4 836046 sc-eQTL 6.89e-03 0.418 0.153 0.949 B_Activated L2
ENSG00000116985 BMP8B 623971 sc-eQTL 9.50e-01 -0.00699 0.111 0.949 B_Activated L2
ENSG00000117000 RLF 251449 sc-eQTL 3.69e-01 0.17 0.188 0.949 B_Activated L2
ENSG00000117010 ZNF684 -118737 sc-eQTL 3.59e-01 -0.167 0.182 0.949 B_Activated L2
ENSG00000131236 CAP1 372603 sc-eQTL 5.18e-01 -0.113 0.174 0.949 B_Activated L2
ENSG00000131238 PPT1 315109 sc-eQTL 7.07e-01 0.0807 0.215 0.949 B_Activated L2
ENSG00000164002 EXO5 -95905 sc-eQTL 6.03e-02 0.306 0.162 0.949 B_Activated L2
ENSG00000171793 CTPS1 -566852 sc-eQTL 6.60e-01 -0.0846 0.192 0.949 B_Activated L2
ENSG00000179862 CITED4 -449527 sc-eQTL 8.23e-01 0.0354 0.158 0.949 B_Activated L2
ENSG00000187815 ZFP69 -64454 sc-eQTL 5.84e-02 -0.328 0.172 0.949 B_Activated L2
ENSG00000198754 OXCT2 641488 sc-eQTL 5.69e-01 0.0981 0.172 0.949 B_Activated L2
ENSG00000259943 AL050341.2 154869 sc-eQTL 8.74e-01 0.0262 0.165 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -279230 sc-eQTL 9.90e-01 -0.00215 0.179 0.949 B_Activated L2
ENSG00000010803 SCMH1 -829318 sc-eQTL 1.64e-01 0.317 0.226 0.922 PB L2
ENSG00000043514 TRIT1 529325 sc-eQTL 6.51e-01 0.0928 0.205 0.922 PB L2
ENSG00000049089 COL9A2 95023 sc-eQTL 6.55e-01 -0.0809 0.18 0.922 PB L2
ENSG00000066136 NFYC -278812 sc-eQTL 3.44e-01 -0.186 0.195 0.922 PB L2
ENSG00000084070 SMAP2 67986 sc-eQTL 4.76e-02 -0.28 0.14 0.922 PB L2
ENSG00000084072 PPIE 720654 sc-eQTL 9.53e-01 -0.0109 0.184 0.922 PB L2
ENSG00000084073 ZMPSTE24 154600 sc-eQTL 9.54e-01 -0.00964 0.167 0.922 PB L2
ENSG00000090621 PABPC4 836046 sc-eQTL 3.11e-01 -0.113 0.111 0.922 PB L2
ENSG00000116985 BMP8B 623971 sc-eQTL 2.10e-01 0.161 0.128 0.922 PB L2
ENSG00000117000 RLF 251449 sc-eQTL 6.68e-01 -0.0889 0.206 0.922 PB L2
ENSG00000117010 ZNF684 -118737 sc-eQTL 4.08e-01 0.143 0.171 0.922 PB L2
ENSG00000131236 CAP1 372603 sc-eQTL 2.31e-01 -0.207 0.172 0.922 PB L2
ENSG00000131238 PPT1 315109 sc-eQTL 7.36e-01 0.0638 0.189 0.922 PB L2
ENSG00000164002 EXO5 -95905 sc-eQTL 6.10e-01 -0.0969 0.189 0.922 PB L2
ENSG00000171793 CTPS1 -566852 sc-eQTL 1.71e-01 0.272 0.197 0.922 PB L2
ENSG00000179862 CITED4 -449527 sc-eQTL 6.57e-01 0.0782 0.176 0.922 PB L2
ENSG00000187815 ZFP69 -64454 sc-eQTL 4.49e-01 -0.141 0.185 0.922 PB L2
ENSG00000198754 OXCT2 641488 sc-eQTL 7.43e-02 -0.296 0.164 0.922 PB L2
ENSG00000259943 AL050341.2 154869 sc-eQTL 7.52e-01 -0.0621 0.196 0.922 PB L2
ENSG00000272145 NFYC-AS1 -279230 sc-eQTL 3.36e-01 -0.178 0.184 0.922 PB L2
ENSG00000010803 SCMH1 -829318 sc-eQTL 3.75e-01 0.161 0.181 0.95 Pro_T L2
ENSG00000043514 TRIT1 529325 sc-eQTL 3.10e-01 0.191 0.187 0.95 Pro_T L2
ENSG00000066136 NFYC -278812 sc-eQTL 9.36e-01 0.0141 0.174 0.95 Pro_T L2
ENSG00000084070 SMAP2 67986 sc-eQTL 3.84e-02 -0.308 0.148 0.95 Pro_T L2
ENSG00000084072 PPIE 720654 sc-eQTL 3.10e-01 -0.175 0.172 0.95 Pro_T L2
ENSG00000084073 ZMPSTE24 154600 sc-eQTL 2.21e-01 0.181 0.147 0.95 Pro_T L2
ENSG00000090621 PABPC4 836046 sc-eQTL 4.29e-01 -0.105 0.132 0.95 Pro_T L2
ENSG00000116985 BMP8B 623971 sc-eQTL 1.07e-01 0.176 0.109 0.95 Pro_T L2
ENSG00000117000 RLF 251449 sc-eQTL 5.05e-01 0.12 0.18 0.95 Pro_T L2
ENSG00000117010 ZNF684 -118737 sc-eQTL 4.52e-01 -0.135 0.179 0.95 Pro_T L2
ENSG00000131236 CAP1 372603 sc-eQTL 3.18e-01 0.144 0.144 0.95 Pro_T L2
ENSG00000131238 PPT1 315109 sc-eQTL 8.38e-01 0.0332 0.162 0.95 Pro_T L2
ENSG00000164002 EXO5 -95905 sc-eQTL 1.92e-01 0.25 0.191 0.95 Pro_T L2
ENSG00000168389 MFSD2A 457724 sc-eQTL 5.88e-01 0.0744 0.137 0.95 Pro_T L2
ENSG00000171793 CTPS1 -566852 sc-eQTL 5.66e-01 -0.0976 0.17 0.95 Pro_T L2
ENSG00000179862 CITED4 -449527 sc-eQTL 5.09e-01 -0.106 0.16 0.95 Pro_T L2
ENSG00000187801 ZFP69B -37266 sc-eQTL 7.85e-01 0.0433 0.159 0.95 Pro_T L2
ENSG00000187815 ZFP69 -64454 sc-eQTL 3.52e-01 -0.168 0.18 0.95 Pro_T L2
ENSG00000198754 OXCT2 641488 sc-eQTL 9.99e-01 -6.84e-05 0.0931 0.95 Pro_T L2
ENSG00000259943 AL050341.2 154869 sc-eQTL 1.15e-01 -0.288 0.182 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 -279230 sc-eQTL 2.54e-01 0.202 0.176 0.95 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 95550 eQTL 0.000376 0.157 0.0439 0.008 0.00686 0.0653
ENSG00000164002 EXO5 -95905 eQTL 1.36e-07 0.221 0.0416 0.00126 0.0 0.0653
ENSG00000171790 SLFNL1 -610401 eQTL 0.0464 0.109 0.0545 0.0 0.0 0.0653
ENSG00000187801 ZFP69B -37271 eQTL 1.2e-06 0.257 0.0526 0.0 0.0 0.0653
ENSG00000213172 AL031985.1 48070 eQTL 0.000591 0.185 0.0538 0.0 0.0 0.0653
ENSG00000238287 AL603839.3 -95825 eQTL 0.00278 -0.249 0.083 0.0 0.0 0.0653
ENSG00000259943 AL050341.2 154869 eQTL 0.00489 0.109 0.0387 0.0 0.0 0.0653
ENSG00000260920 AL031985.3 -51483 eQTL 7.84e-05 0.19 0.0479 0.0 0.0 0.0653

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 95550 1.3e-05 5.64e-06 7.79e-07 3.87e-06 8.79e-07 4.19e-06 5.67e-06 9.6e-07 5.1e-06 2.26e-06 6.44e-06 3.49e-06 9.42e-06 2.22e-06 1.43e-06 3.36e-06 1.8e-06 3.86e-06 1.48e-06 9.69e-07 2.28e-06 4.78e-06 4.49e-06 1.82e-06 8.25e-06 1.74e-06 2.62e-06 1.49e-06 4.36e-06 4.17e-06 2.83e-06 4.71e-07 6.12e-07 1.82e-06 1.95e-06 9.86e-07 9.21e-07 4.93e-07 1.3e-06 3.28e-07 2.4e-07 8.48e-06 5.08e-07 1.89e-07 2.73e-07 3.33e-07 7.99e-07 2.25e-07 2.4e-07
ENSG00000117010 \N -118737 9.28e-06 4.68e-06 3.27e-07 3.09e-06 4.67e-07 2.55e-06 2.95e-06 8.52e-07 3.05e-06 1.4e-06 4.16e-06 2.09e-06 7.63e-06 1.37e-06 9.24e-07 2.1e-06 1.8e-06 3.57e-06 8.58e-07 1.41e-06 1.43e-06 3.58e-06 3.53e-06 1.02e-06 5.08e-06 1.21e-06 1.59e-06 1.76e-06 3.9e-06 2.81e-06 1.95e-06 3.23e-07 3.74e-07 1.22e-06 2.24e-06 8.48e-07 7.48e-07 3.93e-07 1.11e-06 3.47e-07 2.14e-07 5.71e-06 3.96e-07 1.91e-07 3.4e-07 3.38e-07 4.87e-07 2.1e-07 2.32e-07
ENSG00000164002 EXO5 -95905 1.3e-05 5.58e-06 7.38e-07 3.81e-06 8.78e-07 4.15e-06 5.71e-06 9.98e-07 5.13e-06 2.22e-06 6.49e-06 3.54e-06 9.33e-06 2.24e-06 1.43e-06 3.4e-06 1.82e-06 3.84e-06 1.49e-06 9.88e-07 2.23e-06 4.86e-06 4.49e-06 1.82e-06 8.24e-06 1.72e-06 2.68e-06 1.42e-06 4.45e-06 4.18e-06 2.81e-06 4.71e-07 6.11e-07 1.83e-06 1.97e-06 9.67e-07 9.22e-07 4.93e-07 1.32e-06 3.47e-07 2.4e-07 8.42e-06 4.9e-07 1.89e-07 2.87e-07 3.33e-07 8.3e-07 2.25e-07 2.27e-07
ENSG00000168389 \N 457724 3.71e-07 1.25e-07 5.14e-08 2.05e-07 9.79e-08 9.31e-08 1.61e-07 5.2e-08 1.44e-07 4.94e-08 1.54e-07 8.59e-08 1.69e-07 6.76e-08 6.12e-08 7.3e-08 4.17e-08 1.51e-07 5.97e-08 4.78e-08 1.22e-07 1.27e-07 1.44e-07 3.68e-08 1.46e-07 1.14e-07 1.07e-07 9.61e-08 1.12e-07 1.07e-07 9.92e-08 4.69e-08 3.26e-08 8e-08 3.51e-08 3.14e-08 5.59e-08 8.89e-08 6.37e-08 3.6e-08 5.37e-08 1.46e-07 5.08e-08 1.86e-08 3.36e-08 1.77e-08 1.21e-07 1.9e-09 5.02e-08
ENSG00000187801 ZFP69B -37271 5.12e-05 1.31e-05 1.44e-06 8.58e-06 2.39e-06 1.02e-05 1.38e-05 2.12e-06 1.07e-05 5.39e-06 1.5e-05 6.14e-06 2.26e-05 3.69e-06 2.83e-06 6.97e-06 5.67e-06 1.23e-05 2.61e-06 2.83e-06 5.1e-06 1.18e-05 1.07e-05 3.03e-06 1.97e-05 4.49e-06 6.12e-06 3.39e-06 1.21e-05 9.59e-06 6.81e-06 8.07e-07 8.3e-07 2.98e-06 5.47e-06 2.12e-06 1.63e-06 1.84e-06 1.89e-06 1.03e-06 8.43e-07 1.74e-05 2.21e-06 1.64e-07 7.94e-07 1.22e-06 1.56e-06 6.85e-07 6.01e-07
ENSG00000213172 AL031985.1 48070 3.92e-05 1.18e-05 1.23e-06 7.18e-06 2.06e-06 7.99e-06 1.12e-05 1.92e-06 9.72e-06 4.73e-06 1.25e-05 5.35e-06 1.81e-05 3.83e-06 2.11e-06 6.41e-06 4.26e-06 1.01e-05 2.19e-06 2.62e-06 4.38e-06 9.92e-06 8.51e-06 2.04e-06 1.53e-05 3.36e-06 4.8e-06 2.27e-06 9.48e-06 7.93e-06 5.48e-06 4.81e-07 7.6e-07 2.69e-06 4.77e-06 1.59e-06 1.27e-06 1.19e-06 1.38e-06 1.02e-06 6.91e-07 1.48e-05 1.57e-06 1.66e-07 6.36e-07 1.05e-06 9.55e-07 5.52e-07 3.29e-07
ENSG00000260920 AL031985.3 -51483 3.59e-05 1.14e-05 1.32e-06 6.77e-06 1.88e-06 7.51e-06 1.07e-05 1.79e-06 9.39e-06 4.27e-06 1.24e-05 5.17e-06 1.71e-05 4e-06 1.79e-06 6.49e-06 4.04e-06 9.74e-06 1.92e-06 2.56e-06 3.64e-06 9.34e-06 7.69e-06 1.97e-06 1.43e-05 3.11e-06 4.6e-06 2.13e-06 8.58e-06 7.81e-06 5.06e-06 5.23e-07 7.36e-07 2.54e-06 4.55e-06 1.34e-06 1.12e-06 9.53e-07 1.3e-06 9.06e-07 6.37e-07 1.4e-05 1.54e-06 1.81e-07 6.09e-07 1.08e-06 9.07e-07 4.28e-07 3.58e-07