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Genes within 1Mb (chr1:40410829:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -831325 sc-eQTL 3.81e-01 -0.169 0.192 0.949 B_Activated L2
ENSG00000043514 TRIT1 527318 sc-eQTL 5.33e-01 0.118 0.189 0.949 B_Activated L2
ENSG00000049089 COL9A2 93016 sc-eQTL 3.61e-01 0.173 0.189 0.949 B_Activated L2
ENSG00000066136 NFYC -280819 sc-eQTL 4.43e-01 0.163 0.213 0.949 B_Activated L2
ENSG00000084070 SMAP2 65979 sc-eQTL 6.14e-01 0.0542 0.107 0.949 B_Activated L2
ENSG00000084072 PPIE 718647 sc-eQTL 4.53e-01 0.144 0.191 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 152593 sc-eQTL 4.13e-01 0.167 0.203 0.949 B_Activated L2
ENSG00000090621 PABPC4 834039 sc-eQTL 6.89e-03 0.418 0.153 0.949 B_Activated L2
ENSG00000116985 BMP8B 621964 sc-eQTL 9.50e-01 -0.00699 0.111 0.949 B_Activated L2
ENSG00000117000 RLF 249442 sc-eQTL 3.69e-01 0.17 0.188 0.949 B_Activated L2
ENSG00000117010 ZNF684 -120744 sc-eQTL 3.59e-01 -0.167 0.182 0.949 B_Activated L2
ENSG00000131236 CAP1 370596 sc-eQTL 5.18e-01 -0.113 0.174 0.949 B_Activated L2
ENSG00000131238 PPT1 313102 sc-eQTL 7.07e-01 0.0807 0.215 0.949 B_Activated L2
ENSG00000164002 EXO5 -97912 sc-eQTL 6.03e-02 0.306 0.162 0.949 B_Activated L2
ENSG00000171793 CTPS1 -568859 sc-eQTL 6.60e-01 -0.0846 0.192 0.949 B_Activated L2
ENSG00000179862 CITED4 -451534 sc-eQTL 8.23e-01 0.0354 0.158 0.949 B_Activated L2
ENSG00000187815 ZFP69 -66461 sc-eQTL 5.84e-02 -0.328 0.172 0.949 B_Activated L2
ENSG00000198754 OXCT2 639481 sc-eQTL 5.69e-01 0.0981 0.172 0.949 B_Activated L2
ENSG00000259943 AL050341.2 152862 sc-eQTL 8.74e-01 0.0262 0.165 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -281237 sc-eQTL 9.90e-01 -0.00215 0.179 0.949 B_Activated L2
ENSG00000010803 SCMH1 -831325 sc-eQTL 1.64e-01 0.317 0.226 0.922 PB L2
ENSG00000043514 TRIT1 527318 sc-eQTL 6.51e-01 0.0928 0.205 0.922 PB L2
ENSG00000049089 COL9A2 93016 sc-eQTL 6.55e-01 -0.0809 0.18 0.922 PB L2
ENSG00000066136 NFYC -280819 sc-eQTL 3.44e-01 -0.186 0.195 0.922 PB L2
ENSG00000084070 SMAP2 65979 sc-eQTL 4.76e-02 -0.28 0.14 0.922 PB L2
ENSG00000084072 PPIE 718647 sc-eQTL 9.53e-01 -0.0109 0.184 0.922 PB L2
ENSG00000084073 ZMPSTE24 152593 sc-eQTL 9.54e-01 -0.00964 0.167 0.922 PB L2
ENSG00000090621 PABPC4 834039 sc-eQTL 3.11e-01 -0.113 0.111 0.922 PB L2
ENSG00000116985 BMP8B 621964 sc-eQTL 2.10e-01 0.161 0.128 0.922 PB L2
ENSG00000117000 RLF 249442 sc-eQTL 6.68e-01 -0.0889 0.206 0.922 PB L2
ENSG00000117010 ZNF684 -120744 sc-eQTL 4.08e-01 0.143 0.171 0.922 PB L2
ENSG00000131236 CAP1 370596 sc-eQTL 2.31e-01 -0.207 0.172 0.922 PB L2
ENSG00000131238 PPT1 313102 sc-eQTL 7.36e-01 0.0638 0.189 0.922 PB L2
ENSG00000164002 EXO5 -97912 sc-eQTL 6.10e-01 -0.0969 0.189 0.922 PB L2
ENSG00000171793 CTPS1 -568859 sc-eQTL 1.71e-01 0.272 0.197 0.922 PB L2
ENSG00000179862 CITED4 -451534 sc-eQTL 6.57e-01 0.0782 0.176 0.922 PB L2
ENSG00000187815 ZFP69 -66461 sc-eQTL 4.49e-01 -0.141 0.185 0.922 PB L2
ENSG00000198754 OXCT2 639481 sc-eQTL 7.43e-02 -0.296 0.164 0.922 PB L2
ENSG00000259943 AL050341.2 152862 sc-eQTL 7.52e-01 -0.0621 0.196 0.922 PB L2
ENSG00000272145 NFYC-AS1 -281237 sc-eQTL 3.36e-01 -0.178 0.184 0.922 PB L2
ENSG00000010803 SCMH1 -831325 sc-eQTL 3.75e-01 0.161 0.181 0.95 Pro_T L2
ENSG00000043514 TRIT1 527318 sc-eQTL 3.10e-01 0.191 0.187 0.95 Pro_T L2
ENSG00000066136 NFYC -280819 sc-eQTL 9.36e-01 0.0141 0.174 0.95 Pro_T L2
ENSG00000084070 SMAP2 65979 sc-eQTL 3.84e-02 -0.308 0.148 0.95 Pro_T L2
ENSG00000084072 PPIE 718647 sc-eQTL 3.10e-01 -0.175 0.172 0.95 Pro_T L2
ENSG00000084073 ZMPSTE24 152593 sc-eQTL 2.21e-01 0.181 0.147 0.95 Pro_T L2
ENSG00000090621 PABPC4 834039 sc-eQTL 4.29e-01 -0.105 0.132 0.95 Pro_T L2
ENSG00000116985 BMP8B 621964 sc-eQTL 1.07e-01 0.176 0.109 0.95 Pro_T L2
ENSG00000117000 RLF 249442 sc-eQTL 5.05e-01 0.12 0.18 0.95 Pro_T L2
ENSG00000117010 ZNF684 -120744 sc-eQTL 4.52e-01 -0.135 0.179 0.95 Pro_T L2
ENSG00000131236 CAP1 370596 sc-eQTL 3.18e-01 0.144 0.144 0.95 Pro_T L2
ENSG00000131238 PPT1 313102 sc-eQTL 8.38e-01 0.0332 0.162 0.95 Pro_T L2
ENSG00000164002 EXO5 -97912 sc-eQTL 1.92e-01 0.25 0.191 0.95 Pro_T L2
ENSG00000168389 MFSD2A 455717 sc-eQTL 5.88e-01 0.0744 0.137 0.95 Pro_T L2
ENSG00000171793 CTPS1 -568859 sc-eQTL 5.66e-01 -0.0976 0.17 0.95 Pro_T L2
ENSG00000179862 CITED4 -451534 sc-eQTL 5.09e-01 -0.106 0.16 0.95 Pro_T L2
ENSG00000187801 ZFP69B -39273 sc-eQTL 7.85e-01 0.0433 0.159 0.95 Pro_T L2
ENSG00000187815 ZFP69 -66461 sc-eQTL 3.52e-01 -0.168 0.18 0.95 Pro_T L2
ENSG00000198754 OXCT2 639481 sc-eQTL 9.99e-01 -6.84e-05 0.0931 0.95 Pro_T L2
ENSG00000259943 AL050341.2 152862 sc-eQTL 1.15e-01 -0.288 0.182 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 -281237 sc-eQTL 2.54e-01 0.202 0.176 0.95 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 93543 eQTL 0.000376 0.157 0.0439 0.008 0.00686 0.0653
ENSG00000164002 EXO5 -97912 eQTL 1.36e-07 0.221 0.0416 0.00126 0.0 0.0653
ENSG00000171790 SLFNL1 -612408 eQTL 0.0464 0.109 0.0545 0.0 0.0 0.0653
ENSG00000187801 ZFP69B -39278 eQTL 1.2e-06 0.257 0.0526 0.0 0.0 0.0653
ENSG00000213172 AL031985.1 46063 eQTL 0.000591 0.185 0.0538 0.0 0.0 0.0653
ENSG00000238287 AL603839.3 -97832 eQTL 0.00278 -0.249 0.083 0.0 0.0 0.0653
ENSG00000259943 AL050341.2 152862 eQTL 0.00489 0.109 0.0387 0.0 0.0 0.0653
ENSG00000260920 AL031985.3 -53490 eQTL 7.84e-05 0.19 0.0479 0.0 0.0 0.0653

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 93543 9.29e-06 9.41e-06 7.79e-07 4.27e-06 1.62e-06 3.28e-06 8.99e-06 1.16e-06 7.4e-06 4.1e-06 9.01e-06 3.52e-06 1.11e-05 3.41e-06 1.03e-06 5.65e-06 3.58e-06 5.27e-06 1.47e-06 1.79e-06 3.02e-06 7.94e-06 5.58e-06 1.91e-06 1.1e-05 2.57e-06 4.34e-06 2.41e-06 6.54e-06 7.02e-06 4.06e-06 7.36e-07 5.21e-07 2.2e-06 3.09e-06 1.17e-06 1.12e-06 4.36e-07 1.38e-06 8.68e-07 7.37e-07 8.07e-06 1.28e-06 1.53e-07 7.17e-07 9.92e-07 1.16e-06 6.73e-07 5.83e-07
ENSG00000117010 \N -120744 6.93e-06 7.64e-06 8.35e-07 3.5e-06 7.94e-07 1.52e-06 5.03e-06 9.91e-07 4.49e-06 2.65e-06 6.15e-06 3.38e-06 7.56e-06 1.92e-06 1.43e-06 3.98e-06 1.82e-06 3.99e-06 1.47e-06 1.14e-06 3.1e-06 6.28e-06 4.51e-06 1.65e-06 8.24e-06 2.01e-06 2.42e-06 1.64e-06 4.53e-06 4.29e-06 2.79e-06 4.34e-07 7.34e-07 1.9e-06 2.07e-06 8.67e-07 9.55e-07 4.75e-07 8.1e-07 5.97e-07 4.52e-07 6.1e-06 6.59e-07 1.79e-07 3.74e-07 7.44e-07 8.08e-07 5.05e-07 3.26e-07
ENSG00000164002 EXO5 -97912 8.9e-06 9.52e-06 5.93e-07 3.95e-06 1.51e-06 2.7e-06 8.39e-06 1.19e-06 6.4e-06 3.49e-06 9.1e-06 2.93e-06 1.04e-05 3.14e-06 9.51e-07 5.43e-06 3e-06 4.4e-06 1.36e-06 1.68e-06 2.66e-06 7.6e-06 5.31e-06 1.73e-06 1.02e-05 2.4e-06 3.95e-06 2.11e-06 6.08e-06 6.66e-06 3.68e-06 5.77e-07 4.67e-07 1.95e-06 2.74e-06 1.18e-06 1.01e-06 4.56e-07 1.24e-06 8.46e-07 7.52e-07 8.09e-06 1.02e-06 1.64e-07 7.72e-07 1.07e-06 1.12e-06 6.95e-07 5.74e-07
ENSG00000168389 \N 455717 1.13e-06 5.74e-07 7.87e-08 3.61e-07 1.01e-07 2.16e-07 4.68e-07 7.56e-08 3.51e-07 1.78e-07 3.66e-07 2.98e-07 5.81e-07 9.48e-08 1.5e-07 2.18e-07 8.42e-08 3.74e-07 8.68e-08 1.31e-07 1.91e-07 4.31e-07 3.07e-07 4.25e-08 7.72e-07 2.2e-07 3.04e-07 2.24e-07 2.11e-07 2.75e-07 2.55e-07 7.41e-08 4.76e-08 1.27e-07 3.04e-07 4.68e-08 1.05e-07 6.31e-08 3.82e-08 5.32e-08 5.56e-08 4.95e-07 6.04e-08 1.27e-08 4.06e-08 1.42e-08 7.89e-08 1.17e-08 5.69e-08
ENSG00000187801 ZFP69B -39278 1.54e-05 1.73e-05 2.43e-06 9.25e-06 2.39e-06 6.2e-06 1.93e-05 2.4e-06 1.66e-05 7.9e-06 1.97e-05 7.38e-06 2.41e-05 5.53e-06 4.27e-06 9.37e-06 7.29e-06 1.39e-05 3.09e-06 3.72e-06 7.06e-06 1.63e-05 1.37e-05 4.28e-06 2.49e-05 5.29e-06 7.72e-06 6.54e-06 1.56e-05 1.3e-05 1.05e-05 1.16e-06 1.22e-06 3.8e-06 6.62e-06 2.82e-06 1.72e-06 2.03e-06 2.26e-06 1.96e-06 1.2e-06 1.82e-05 2.39e-06 2.07e-07 1.46e-06 2.2e-06 1.93e-06 8.55e-07 8.61e-07
ENSG00000213172 AL031985.1 46063 1.48e-05 1.57e-05 2.44e-06 8.36e-06 2.53e-06 5.83e-06 1.56e-05 2.2e-06 1.5e-05 6.76e-06 1.79e-05 6.79e-06 2.13e-05 4.89e-06 3.8e-06 9.08e-06 6.49e-06 1.21e-05 2.66e-06 3.14e-06 6.46e-06 1.41e-05 1.2e-05 3.73e-06 2.29e-05 5.17e-06 7.53e-06 5.51e-06 1.42e-05 1.14e-05 9.19e-06 9.64e-07 1.1e-06 3.59e-06 6.02e-06 2.77e-06 1.79e-06 1.95e-06 2.08e-06 1.5e-06 1.07e-06 1.67e-05 1.97e-06 1.88e-07 1.05e-06 1.85e-06 1.79e-06 7.25e-07 6.27e-07
ENSG00000260920 AL031985.3 -53490 1.41e-05 1.46e-05 1.87e-06 7.65e-06 2.38e-06 5.26e-06 1.25e-05 2.18e-06 1.31e-05 6e-06 1.58e-05 6.31e-06 1.85e-05 4.19e-06 3.41e-06 8.06e-06 5.55e-06 1.11e-05 2.65e-06 2.89e-06 6.31e-06 1.27e-05 1.03e-05 3.3e-06 2.04e-05 4.65e-06 7.14e-06 5.24e-06 1.25e-05 1e-05 7.68e-06 1.08e-06 1.27e-06 3.39e-06 5.59e-06 2.56e-06 1.9e-06 1.89e-06 2.17e-06 1.23e-06 9.48e-07 1.48e-05 1.61e-06 1.47e-07 9.39e-07 1.72e-06 1.39e-06 7e-07 4.59e-07