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Genes within 1Mb (chr1:40406523:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -835631 sc-eQTL 3.81e-01 -0.169 0.192 0.949 B_Activated L2
ENSG00000043514 TRIT1 523012 sc-eQTL 5.33e-01 0.118 0.189 0.949 B_Activated L2
ENSG00000049089 COL9A2 88710 sc-eQTL 3.61e-01 0.173 0.189 0.949 B_Activated L2
ENSG00000066136 NFYC -285125 sc-eQTL 4.43e-01 0.163 0.213 0.949 B_Activated L2
ENSG00000084070 SMAP2 61673 sc-eQTL 6.14e-01 0.0542 0.107 0.949 B_Activated L2
ENSG00000084072 PPIE 714341 sc-eQTL 4.53e-01 0.144 0.191 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 148287 sc-eQTL 4.13e-01 0.167 0.203 0.949 B_Activated L2
ENSG00000090621 PABPC4 829733 sc-eQTL 6.89e-03 0.418 0.153 0.949 B_Activated L2
ENSG00000116985 BMP8B 617658 sc-eQTL 9.50e-01 -0.00699 0.111 0.949 B_Activated L2
ENSG00000117000 RLF 245136 sc-eQTL 3.69e-01 0.17 0.188 0.949 B_Activated L2
ENSG00000117010 ZNF684 -125050 sc-eQTL 3.59e-01 -0.167 0.182 0.949 B_Activated L2
ENSG00000131236 CAP1 366290 sc-eQTL 5.18e-01 -0.113 0.174 0.949 B_Activated L2
ENSG00000131238 PPT1 308796 sc-eQTL 7.07e-01 0.0807 0.215 0.949 B_Activated L2
ENSG00000164002 EXO5 -102218 sc-eQTL 6.03e-02 0.306 0.162 0.949 B_Activated L2
ENSG00000171793 CTPS1 -573165 sc-eQTL 6.60e-01 -0.0846 0.192 0.949 B_Activated L2
ENSG00000179862 CITED4 -455840 sc-eQTL 8.23e-01 0.0354 0.158 0.949 B_Activated L2
ENSG00000187815 ZFP69 -70767 sc-eQTL 5.84e-02 -0.328 0.172 0.949 B_Activated L2
ENSG00000198754 OXCT2 635175 sc-eQTL 5.69e-01 0.0981 0.172 0.949 B_Activated L2
ENSG00000259943 AL050341.2 148556 sc-eQTL 8.74e-01 0.0262 0.165 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -285543 sc-eQTL 9.90e-01 -0.00215 0.179 0.949 B_Activated L2
ENSG00000010803 SCMH1 -835631 sc-eQTL 1.64e-01 0.317 0.226 0.922 PB L2
ENSG00000043514 TRIT1 523012 sc-eQTL 6.51e-01 0.0928 0.205 0.922 PB L2
ENSG00000049089 COL9A2 88710 sc-eQTL 6.55e-01 -0.0809 0.18 0.922 PB L2
ENSG00000066136 NFYC -285125 sc-eQTL 3.44e-01 -0.186 0.195 0.922 PB L2
ENSG00000084070 SMAP2 61673 sc-eQTL 4.76e-02 -0.28 0.14 0.922 PB L2
ENSG00000084072 PPIE 714341 sc-eQTL 9.53e-01 -0.0109 0.184 0.922 PB L2
ENSG00000084073 ZMPSTE24 148287 sc-eQTL 9.54e-01 -0.00964 0.167 0.922 PB L2
ENSG00000090621 PABPC4 829733 sc-eQTL 3.11e-01 -0.113 0.111 0.922 PB L2
ENSG00000116985 BMP8B 617658 sc-eQTL 2.10e-01 0.161 0.128 0.922 PB L2
ENSG00000117000 RLF 245136 sc-eQTL 6.68e-01 -0.0889 0.206 0.922 PB L2
ENSG00000117010 ZNF684 -125050 sc-eQTL 4.08e-01 0.143 0.171 0.922 PB L2
ENSG00000131236 CAP1 366290 sc-eQTL 2.31e-01 -0.207 0.172 0.922 PB L2
ENSG00000131238 PPT1 308796 sc-eQTL 7.36e-01 0.0638 0.189 0.922 PB L2
ENSG00000164002 EXO5 -102218 sc-eQTL 6.10e-01 -0.0969 0.189 0.922 PB L2
ENSG00000171793 CTPS1 -573165 sc-eQTL 1.71e-01 0.272 0.197 0.922 PB L2
ENSG00000179862 CITED4 -455840 sc-eQTL 6.57e-01 0.0782 0.176 0.922 PB L2
ENSG00000187815 ZFP69 -70767 sc-eQTL 4.49e-01 -0.141 0.185 0.922 PB L2
ENSG00000198754 OXCT2 635175 sc-eQTL 7.43e-02 -0.296 0.164 0.922 PB L2
ENSG00000259943 AL050341.2 148556 sc-eQTL 7.52e-01 -0.0621 0.196 0.922 PB L2
ENSG00000272145 NFYC-AS1 -285543 sc-eQTL 3.36e-01 -0.178 0.184 0.922 PB L2
ENSG00000010803 SCMH1 -835631 sc-eQTL 3.75e-01 0.161 0.181 0.95 Pro_T L2
ENSG00000043514 TRIT1 523012 sc-eQTL 3.10e-01 0.191 0.187 0.95 Pro_T L2
ENSG00000066136 NFYC -285125 sc-eQTL 9.36e-01 0.0141 0.174 0.95 Pro_T L2
ENSG00000084070 SMAP2 61673 sc-eQTL 3.84e-02 -0.308 0.148 0.95 Pro_T L2
ENSG00000084072 PPIE 714341 sc-eQTL 3.10e-01 -0.175 0.172 0.95 Pro_T L2
ENSG00000084073 ZMPSTE24 148287 sc-eQTL 2.21e-01 0.181 0.147 0.95 Pro_T L2
ENSG00000090621 PABPC4 829733 sc-eQTL 4.29e-01 -0.105 0.132 0.95 Pro_T L2
ENSG00000116985 BMP8B 617658 sc-eQTL 1.07e-01 0.176 0.109 0.95 Pro_T L2
ENSG00000117000 RLF 245136 sc-eQTL 5.05e-01 0.12 0.18 0.95 Pro_T L2
ENSG00000117010 ZNF684 -125050 sc-eQTL 4.52e-01 -0.135 0.179 0.95 Pro_T L2
ENSG00000131236 CAP1 366290 sc-eQTL 3.18e-01 0.144 0.144 0.95 Pro_T L2
ENSG00000131238 PPT1 308796 sc-eQTL 8.38e-01 0.0332 0.162 0.95 Pro_T L2
ENSG00000164002 EXO5 -102218 sc-eQTL 1.92e-01 0.25 0.191 0.95 Pro_T L2
ENSG00000168389 MFSD2A 451411 sc-eQTL 5.88e-01 0.0744 0.137 0.95 Pro_T L2
ENSG00000171793 CTPS1 -573165 sc-eQTL 5.66e-01 -0.0976 0.17 0.95 Pro_T L2
ENSG00000179862 CITED4 -455840 sc-eQTL 5.09e-01 -0.106 0.16 0.95 Pro_T L2
ENSG00000187801 ZFP69B -43579 sc-eQTL 7.85e-01 0.0433 0.159 0.95 Pro_T L2
ENSG00000187815 ZFP69 -70767 sc-eQTL 3.52e-01 -0.168 0.18 0.95 Pro_T L2
ENSG00000198754 OXCT2 635175 sc-eQTL 9.99e-01 -6.84e-05 0.0931 0.95 Pro_T L2
ENSG00000259943 AL050341.2 148556 sc-eQTL 1.15e-01 -0.288 0.182 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 -285543 sc-eQTL 2.54e-01 0.202 0.176 0.95 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 89237 eQTL 0.000452 0.154 0.0437 0.00715 0.00587 0.0643
ENSG00000164002 EXO5 -102218 eQTL 1.71e-07 0.218 0.0414 0.00112 0.0 0.0643
ENSG00000171790 SLFNL1 -616714 eQTL 0.039 0.112 0.0541 0.0 0.0 0.0643
ENSG00000187801 ZFP69B -43584 eQTL 1.12e-06 0.256 0.0523 0.0 0.0 0.0643
ENSG00000213172 AL031985.1 41757 eQTL 0.000525 0.186 0.0534 0.0 0.0 0.0643
ENSG00000238287 AL603839.3 -102138 eQTL 0.00228 -0.252 0.0825 0.0 0.0 0.0643
ENSG00000259943 AL050341.2 148556 eQTL 0.00682 0.104 0.0385 0.0 0.0 0.0643
ENSG00000260920 AL031985.3 -57796 eQTL 0.000115 0.184 0.0476 0.0 0.0 0.0643

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 89237 1.9e-06 4.7e-06 3.2e-07 1.9e-06 3.58e-07 8.21e-07 1.31e-06 3.86e-07 1.83e-06 7.98e-07 2.48e-06 1.42e-06 3.33e-06 1.43e-06 4.99e-07 1.1e-06 1.34e-06 2.18e-06 5.45e-07 4.94e-07 6.53e-07 2.61e-06 1.79e-06 6.29e-07 4.11e-06 1.22e-06 1.2e-06 8.57e-07 1.72e-06 1.47e-06 1.8e-06 3.45e-07 2.54e-07 6.08e-07 1.35e-06 4.36e-07 7.88e-07 3.93e-07 4.82e-07 2.91e-07 3.04e-07 3.56e-06 3.34e-07 1.79e-07 2.11e-07 2.28e-07 2.6e-07 5.32e-08 1.56e-07
ENSG00000117010 \N -125050 1.27e-06 1.27e-06 3.03e-07 1.14e-06 1.07e-07 4.12e-07 7.32e-07 1.21e-07 1.03e-06 2.88e-07 1.26e-06 5.45e-07 1.48e-06 2.68e-07 3.58e-07 2.84e-07 7.73e-07 5.65e-07 2.92e-07 2.76e-07 2.72e-07 8.19e-07 4.96e-07 2.71e-07 1.97e-06 2.37e-07 5.05e-07 2.63e-07 6.19e-07 7.92e-07 4.9e-07 4.87e-08 5.78e-08 2.1e-07 4.07e-07 7.56e-08 4.77e-07 1.69e-07 6.74e-08 5.25e-08 1.23e-07 1.34e-06 5.91e-08 1.65e-07 1.14e-07 3.46e-08 1.29e-07 7.25e-09 5.19e-08
ENSG00000164002 EXO5 -102218 1.29e-06 3.15e-06 2.85e-07 1.74e-06 2.05e-07 6.68e-07 1.49e-06 3.38e-07 1.75e-06 5.98e-07 1.97e-06 8.75e-07 2.61e-06 6.9e-07 5.18e-07 9.13e-07 1.12e-06 1.1e-06 8.36e-07 6.4e-07 8.13e-07 1.95e-06 9.97e-07 6.51e-07 2.65e-06 7.54e-07 9.89e-07 7.26e-07 1.44e-06 1.25e-06 8.07e-07 2.49e-07 2.33e-07 6.94e-07 8.1e-07 3.22e-07 6.89e-07 3.42e-07 3.5e-07 4.07e-08 2.83e-07 2.5e-06 6.17e-08 1.61e-07 1.72e-07 1.22e-07 2.27e-07 8.57e-08 8e-08
ENSG00000168389 \N 451411 2.56e-07 1.16e-07 3.41e-08 1.66e-07 1.03e-07 8.95e-08 1.31e-07 5.29e-08 1.33e-07 3.99e-08 1.55e-07 7.4e-08 1.19e-07 6.1e-08 4.48e-08 7.4e-08 5.2e-08 1.02e-07 4.91e-08 2.93e-08 1.04e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.08e-07 9.43e-08 3.19e-08 2.6e-08 8.21e-08 1.06e-07 4.32e-08 4.7e-08 8.28e-08 8.39e-08 3.96e-08 3.31e-08 1.43e-07 4.33e-08 1.81e-08 1.15e-07 1.86e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000187801 ZFP69B -43584 7.03e-06 1.27e-05 1.05e-06 5.85e-06 1.85e-06 4.01e-06 1.01e-05 1.81e-06 8.38e-06 4.8e-06 1.28e-05 5.06e-06 1.38e-05 3.5e-06 2.07e-06 6.12e-06 3.97e-06 5.37e-06 2.57e-06 1.55e-06 3.53e-06 7.99e-06 6.94e-06 2.06e-06 1.83e-05 2.84e-06 4.81e-06 1.86e-06 7.12e-06 7.77e-06 5.24e-06 5.64e-07 6.52e-07 2.53e-06 4.81e-06 1.17e-06 1.03e-06 6.03e-07 1.35e-06 7.13e-07 5.82e-07 1.33e-05 8.79e-07 2.5e-07 6.1e-07 8.79e-07 9.92e-07 5.67e-07 4.23e-07
ENSG00000213172 AL031985.1 41757 7.55e-06 1.26e-05 1.32e-06 6.18e-06 1.87e-06 4.19e-06 1.02e-05 1.92e-06 8.87e-06 5.08e-06 1.36e-05 5.09e-06 1.46e-05 3.63e-06 2.21e-06 6.37e-06 4.1e-06 5.9e-06 2.64e-06 1.71e-06 3.97e-06 8.12e-06 7.18e-06 1.91e-06 2e-05 3.09e-06 4.7e-06 2.21e-06 7.67e-06 7.87e-06 5.51e-06 5.87e-07 5.91e-07 2.63e-06 4.96e-06 1.16e-06 1.03e-06 8.97e-07 1.37e-06 7.47e-07 6.39e-07 1.39e-05 8.82e-07 2.62e-07 6.22e-07 9.43e-07 9.03e-07 6.9e-07 4.68e-07
ENSG00000260920 AL031985.3 -57796 4.89e-06 9.43e-06 7.29e-07 3.92e-06 1.38e-06 1.68e-06 7.57e-06 1.2e-06 4.77e-06 2.9e-06 8.88e-06 2.95e-06 1.04e-05 3.5e-06 1.06e-06 4.04e-06 2.94e-06 3.99e-06 1.49e-06 9.88e-07 2.9e-06 5.54e-06 4.68e-06 1.6e-06 1.18e-05 1.99e-06 2.75e-06 1.71e-06 4.43e-06 4.87e-06 3.29e-06 4.17e-07 5.97e-07 1.71e-06 2.69e-06 8.67e-07 9.46e-07 4.07e-07 9.12e-07 3.45e-07 2.08e-07 8.83e-06 3.83e-07 2.01e-07 3.45e-07 5.87e-07 9.33e-07 2.62e-07 1.77e-07