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Genes within 1Mb (chr1:40403282:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -838872 sc-eQTL 3.81e-01 -0.169 0.192 0.949 B_Activated L2
ENSG00000043514 TRIT1 519771 sc-eQTL 5.33e-01 0.118 0.189 0.949 B_Activated L2
ENSG00000049089 COL9A2 85469 sc-eQTL 3.61e-01 0.173 0.189 0.949 B_Activated L2
ENSG00000066136 NFYC -288366 sc-eQTL 4.43e-01 0.163 0.213 0.949 B_Activated L2
ENSG00000084070 SMAP2 58432 sc-eQTL 6.14e-01 0.0542 0.107 0.949 B_Activated L2
ENSG00000084072 PPIE 711100 sc-eQTL 4.53e-01 0.144 0.191 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 145046 sc-eQTL 4.13e-01 0.167 0.203 0.949 B_Activated L2
ENSG00000090621 PABPC4 826492 sc-eQTL 6.89e-03 0.418 0.153 0.949 B_Activated L2
ENSG00000116985 BMP8B 614417 sc-eQTL 9.50e-01 -0.00699 0.111 0.949 B_Activated L2
ENSG00000117000 RLF 241895 sc-eQTL 3.69e-01 0.17 0.188 0.949 B_Activated L2
ENSG00000117010 ZNF684 -128291 sc-eQTL 3.59e-01 -0.167 0.182 0.949 B_Activated L2
ENSG00000131236 CAP1 363049 sc-eQTL 5.18e-01 -0.113 0.174 0.949 B_Activated L2
ENSG00000131238 PPT1 305555 sc-eQTL 7.07e-01 0.0807 0.215 0.949 B_Activated L2
ENSG00000164002 EXO5 -105459 sc-eQTL 6.03e-02 0.306 0.162 0.949 B_Activated L2
ENSG00000171793 CTPS1 -576406 sc-eQTL 6.60e-01 -0.0846 0.192 0.949 B_Activated L2
ENSG00000179862 CITED4 -459081 sc-eQTL 8.23e-01 0.0354 0.158 0.949 B_Activated L2
ENSG00000187815 ZFP69 -74008 sc-eQTL 5.84e-02 -0.328 0.172 0.949 B_Activated L2
ENSG00000198754 OXCT2 631934 sc-eQTL 5.69e-01 0.0981 0.172 0.949 B_Activated L2
ENSG00000259943 AL050341.2 145315 sc-eQTL 8.74e-01 0.0262 0.165 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -288784 sc-eQTL 9.90e-01 -0.00215 0.179 0.949 B_Activated L2
ENSG00000010803 SCMH1 -838872 sc-eQTL 1.64e-01 0.317 0.226 0.922 PB L2
ENSG00000043514 TRIT1 519771 sc-eQTL 6.51e-01 0.0928 0.205 0.922 PB L2
ENSG00000049089 COL9A2 85469 sc-eQTL 6.55e-01 -0.0809 0.18 0.922 PB L2
ENSG00000066136 NFYC -288366 sc-eQTL 3.44e-01 -0.186 0.195 0.922 PB L2
ENSG00000084070 SMAP2 58432 sc-eQTL 4.76e-02 -0.28 0.14 0.922 PB L2
ENSG00000084072 PPIE 711100 sc-eQTL 9.53e-01 -0.0109 0.184 0.922 PB L2
ENSG00000084073 ZMPSTE24 145046 sc-eQTL 9.54e-01 -0.00964 0.167 0.922 PB L2
ENSG00000090621 PABPC4 826492 sc-eQTL 3.11e-01 -0.113 0.111 0.922 PB L2
ENSG00000116985 BMP8B 614417 sc-eQTL 2.10e-01 0.161 0.128 0.922 PB L2
ENSG00000117000 RLF 241895 sc-eQTL 6.68e-01 -0.0889 0.206 0.922 PB L2
ENSG00000117010 ZNF684 -128291 sc-eQTL 4.08e-01 0.143 0.171 0.922 PB L2
ENSG00000131236 CAP1 363049 sc-eQTL 2.31e-01 -0.207 0.172 0.922 PB L2
ENSG00000131238 PPT1 305555 sc-eQTL 7.36e-01 0.0638 0.189 0.922 PB L2
ENSG00000164002 EXO5 -105459 sc-eQTL 6.10e-01 -0.0969 0.189 0.922 PB L2
ENSG00000171793 CTPS1 -576406 sc-eQTL 1.71e-01 0.272 0.197 0.922 PB L2
ENSG00000179862 CITED4 -459081 sc-eQTL 6.57e-01 0.0782 0.176 0.922 PB L2
ENSG00000187815 ZFP69 -74008 sc-eQTL 4.49e-01 -0.141 0.185 0.922 PB L2
ENSG00000198754 OXCT2 631934 sc-eQTL 7.43e-02 -0.296 0.164 0.922 PB L2
ENSG00000259943 AL050341.2 145315 sc-eQTL 7.52e-01 -0.0621 0.196 0.922 PB L2
ENSG00000272145 NFYC-AS1 -288784 sc-eQTL 3.36e-01 -0.178 0.184 0.922 PB L2
ENSG00000010803 SCMH1 -838872 sc-eQTL 3.75e-01 0.161 0.181 0.95 Pro_T L2
ENSG00000043514 TRIT1 519771 sc-eQTL 3.10e-01 0.191 0.187 0.95 Pro_T L2
ENSG00000066136 NFYC -288366 sc-eQTL 9.36e-01 0.0141 0.174 0.95 Pro_T L2
ENSG00000084070 SMAP2 58432 sc-eQTL 3.84e-02 -0.308 0.148 0.95 Pro_T L2
ENSG00000084072 PPIE 711100 sc-eQTL 3.10e-01 -0.175 0.172 0.95 Pro_T L2
ENSG00000084073 ZMPSTE24 145046 sc-eQTL 2.21e-01 0.181 0.147 0.95 Pro_T L2
ENSG00000090621 PABPC4 826492 sc-eQTL 4.29e-01 -0.105 0.132 0.95 Pro_T L2
ENSG00000116985 BMP8B 614417 sc-eQTL 1.07e-01 0.176 0.109 0.95 Pro_T L2
ENSG00000117000 RLF 241895 sc-eQTL 5.05e-01 0.12 0.18 0.95 Pro_T L2
ENSG00000117010 ZNF684 -128291 sc-eQTL 4.52e-01 -0.135 0.179 0.95 Pro_T L2
ENSG00000131236 CAP1 363049 sc-eQTL 3.18e-01 0.144 0.144 0.95 Pro_T L2
ENSG00000131238 PPT1 305555 sc-eQTL 8.38e-01 0.0332 0.162 0.95 Pro_T L2
ENSG00000164002 EXO5 -105459 sc-eQTL 1.92e-01 0.25 0.191 0.95 Pro_T L2
ENSG00000168389 MFSD2A 448170 sc-eQTL 5.88e-01 0.0744 0.137 0.95 Pro_T L2
ENSG00000171793 CTPS1 -576406 sc-eQTL 5.66e-01 -0.0976 0.17 0.95 Pro_T L2
ENSG00000179862 CITED4 -459081 sc-eQTL 5.09e-01 -0.106 0.16 0.95 Pro_T L2
ENSG00000187801 ZFP69B -46820 sc-eQTL 7.85e-01 0.0433 0.159 0.95 Pro_T L2
ENSG00000187815 ZFP69 -74008 sc-eQTL 3.52e-01 -0.168 0.18 0.95 Pro_T L2
ENSG00000198754 OXCT2 631934 sc-eQTL 9.99e-01 -6.84e-05 0.0931 0.95 Pro_T L2
ENSG00000259943 AL050341.2 145315 sc-eQTL 1.15e-01 -0.288 0.182 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 -288784 sc-eQTL 2.54e-01 0.202 0.176 0.95 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 85996 eQTL 0.000452 0.154 0.0437 0.00716 0.00587 0.0643
ENSG00000164002 EXO5 -105459 eQTL 1.72e-07 0.218 0.0414 0.00112 0.0 0.0643
ENSG00000171790 SLFNL1 -619955 eQTL 0.0389 0.112 0.0541 0.0 0.0 0.0643
ENSG00000187801 ZFP69B -46825 eQTL 1.12e-06 0.256 0.0523 0.0 0.0 0.0643
ENSG00000213172 AL031985.1 38516 eQTL 0.000522 0.186 0.0534 0.0 0.0 0.0643
ENSG00000238287 AL603839.3 -105379 eQTL 0.00228 -0.252 0.0825 0.0 0.0 0.0643
ENSG00000259943 AL050341.2 145315 eQTL 0.00679 0.104 0.0385 0.0 0.0 0.0643
ENSG00000260920 AL031985.3 -61037 eQTL 0.000116 0.184 0.0476 0.0 0.0 0.0643

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 85996 7.68e-06 8.92e-06 9.65e-07 3.75e-06 1.83e-06 2.16e-06 9.07e-06 1.69e-06 5.5e-06 4.04e-06 9e-06 4.28e-06 1.11e-05 3.47e-06 1.46e-06 5.6e-06 3.58e-06 3.85e-06 1.93e-06 2.41e-06 3.52e-06 7.4e-06 5.53e-06 1.93e-06 9.2e-06 2.4e-06 4.48e-06 2.34e-06 6.53e-06 6.62e-06 4.13e-06 4.96e-07 8.43e-07 2.61e-06 2.38e-06 2.1e-06 1.12e-06 9.96e-07 1.41e-06 7.43e-07 4.72e-07 8.98e-06 1.43e-06 1.74e-07 6.98e-07 1.01e-06 9.16e-07 6.12e-07 5.64e-07
ENSG00000117010 \N -128291 5.08e-06 5.05e-06 8.75e-07 2.73e-06 1.36e-06 1.55e-06 4.27e-06 1.12e-06 4.94e-06 2.41e-06 5.21e-06 3.28e-06 7.01e-06 2.31e-06 1.35e-06 3.87e-06 2.07e-06 3.57e-06 1.48e-06 1.14e-06 3.02e-06 4.65e-06 4.02e-06 1.36e-06 5.3e-06 1.74e-06 2.24e-06 1.73e-06 4.19e-06 4.17e-06 2.77e-06 5.26e-07 5.02e-07 1.79e-06 2.07e-06 1.17e-06 9.37e-07 4.24e-07 1.06e-06 3.57e-07 2.1e-07 5.67e-06 7.69e-07 2.06e-07 6.22e-07 7.78e-07 9.78e-07 4.43e-07 4.23e-07
ENSG00000164002 EXO5 -105459 5.86e-06 6.14e-06 6.42e-07 3.52e-06 1.75e-06 1.54e-06 7.26e-06 1.21e-06 4.83e-06 2.86e-06 7.02e-06 2.88e-06 9e-06 2.09e-06 1.04e-06 4.07e-06 2e-06 3.98e-06 1.43e-06 1.51e-06 2.82e-06 5.36e-06 4.68e-06 1.81e-06 7.97e-06 2.1e-06 3.51e-06 1.84e-06 4.66e-06 4.67e-06 2.91e-06 4.18e-07 7.87e-07 1.82e-06 2.03e-06 1.35e-06 1.06e-06 5e-07 8.84e-07 5.64e-07 3.06e-07 7.99e-06 1.22e-06 1.95e-07 8.27e-07 1.08e-06 1.15e-06 7.05e-07 6.01e-07
ENSG00000168389 \N 448170 1.27e-06 8.81e-07 1.46e-07 3.68e-07 1.04e-07 3.24e-07 7e-07 2.66e-07 6.62e-07 3.1e-07 1.03e-06 5.4e-07 1.03e-06 1.97e-07 3.58e-07 3.96e-07 5.34e-07 4.16e-07 3.36e-07 3.31e-07 2.55e-07 5.5e-07 4.96e-07 3.24e-07 1.2e-06 2.64e-07 5.49e-07 3.9e-07 5.56e-07 7.79e-07 4.02e-07 4.75e-08 1.35e-07 1.79e-07 3.66e-07 2.89e-07 2.14e-07 1.13e-07 8.61e-08 1.8e-08 8.75e-08 8.03e-07 9.66e-08 1.05e-08 1.84e-07 4.23e-08 1.46e-07 5.79e-08 5.26e-08
ENSG00000187801 ZFP69B -46825 1.14e-05 1.24e-05 2.18e-06 6.77e-06 2.32e-06 4.9e-06 1.31e-05 2.43e-06 1.06e-05 6.2e-06 1.5e-05 6.45e-06 1.96e-05 4.45e-06 3.67e-06 7.79e-06 5.67e-06 9.58e-06 3.09e-06 3.12e-06 6.77e-06 1.09e-05 1.03e-05 3.39e-06 1.7e-05 4.4e-06 7.27e-06 4.99e-06 1.22e-05 9.59e-06 7.69e-06 1.03e-06 1.24e-06 3.52e-06 4.78e-06 2.88e-06 1.82e-06 2.06e-06 2.11e-06 9.86e-07 8.61e-07 1.65e-05 2.25e-06 1.56e-07 9.34e-07 1.96e-06 1.87e-06 7.37e-07 4.74e-07
ENSG00000213172 AL031985.1 38516 1.3e-05 1.43e-05 2.59e-06 7.89e-06 2.42e-06 5.65e-06 1.69e-05 2.78e-06 1.27e-05 6.72e-06 1.74e-05 6.83e-06 2.36e-05 5.14e-06 4.18e-06 9.02e-06 6.8e-06 1.09e-05 3.39e-06 3.61e-06 6.83e-06 1.25e-05 1.24e-05 3.85e-06 2.05e-05 4.53e-06 7.6e-06 5.42e-06 1.39e-05 1.14e-05 9.27e-06 9.88e-07 1.36e-06 3.7e-06 5.42e-06 3.11e-06 1.82e-06 2.2e-06 2.11e-06 1.26e-06 1.03e-06 1.86e-05 2.46e-06 1.68e-07 1.02e-06 2.36e-06 2.05e-06 6.58e-07 5.41e-07
ENSG00000260920 AL031985.3 -61037 9.72e-06 1.01e-05 1.26e-06 5.08e-06 2.39e-06 4.01e-06 1.05e-05 2.18e-06 9.39e-06 5.31e-06 1.24e-05 5.57e-06 1.47e-05 3.63e-06 2.6e-06 6.57e-06 4.1e-06 7.32e-06 2.65e-06 2.82e-06 5.14e-06 8.93e-06 7.67e-06 3.21e-06 1.29e-05 3.75e-06 5.97e-06 3.88e-06 9.09e-06 7.89e-06 5.8e-06 9.42e-07 1.21e-06 2.92e-06 3.69e-06 2.62e-06 1.65e-06 2e-06 1.79e-06 1e-06 7.18e-07 1.3e-05 1.61e-06 1.81e-07 8.13e-07 1.73e-06 1.5e-06 8.03e-07 4.47e-07