logo

Genes within 1Mb (chr1:40400818:CTGG:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -841336 sc-eQTL 3.81e-01 -0.169 0.192 0.949 B_Activated L2
ENSG00000043514 TRIT1 517307 sc-eQTL 5.33e-01 0.118 0.189 0.949 B_Activated L2
ENSG00000049089 COL9A2 83005 sc-eQTL 3.61e-01 0.173 0.189 0.949 B_Activated L2
ENSG00000066136 NFYC -290830 sc-eQTL 4.43e-01 0.163 0.213 0.949 B_Activated L2
ENSG00000084070 SMAP2 55968 sc-eQTL 6.14e-01 0.0542 0.107 0.949 B_Activated L2
ENSG00000084072 PPIE 708636 sc-eQTL 4.53e-01 0.144 0.191 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 142582 sc-eQTL 4.13e-01 0.167 0.203 0.949 B_Activated L2
ENSG00000090621 PABPC4 824028 sc-eQTL 6.89e-03 0.418 0.153 0.949 B_Activated L2
ENSG00000116985 BMP8B 611953 sc-eQTL 9.50e-01 -0.00699 0.111 0.949 B_Activated L2
ENSG00000117000 RLF 239431 sc-eQTL 3.69e-01 0.17 0.188 0.949 B_Activated L2
ENSG00000117010 ZNF684 -130755 sc-eQTL 3.59e-01 -0.167 0.182 0.949 B_Activated L2
ENSG00000131236 CAP1 360585 sc-eQTL 5.18e-01 -0.113 0.174 0.949 B_Activated L2
ENSG00000131238 PPT1 303091 sc-eQTL 7.07e-01 0.0807 0.215 0.949 B_Activated L2
ENSG00000164002 EXO5 -107923 sc-eQTL 6.03e-02 0.306 0.162 0.949 B_Activated L2
ENSG00000171793 CTPS1 -578870 sc-eQTL 6.60e-01 -0.0846 0.192 0.949 B_Activated L2
ENSG00000179862 CITED4 -461545 sc-eQTL 8.23e-01 0.0354 0.158 0.949 B_Activated L2
ENSG00000187815 ZFP69 -76472 sc-eQTL 5.84e-02 -0.328 0.172 0.949 B_Activated L2
ENSG00000198754 OXCT2 629470 sc-eQTL 5.69e-01 0.0981 0.172 0.949 B_Activated L2
ENSG00000259943 AL050341.2 142851 sc-eQTL 8.74e-01 0.0262 0.165 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -291248 sc-eQTL 9.90e-01 -0.00215 0.179 0.949 B_Activated L2
ENSG00000010803 SCMH1 -841336 sc-eQTL 1.64e-01 0.317 0.226 0.922 PB L2
ENSG00000043514 TRIT1 517307 sc-eQTL 6.51e-01 0.0928 0.205 0.922 PB L2
ENSG00000049089 COL9A2 83005 sc-eQTL 6.55e-01 -0.0809 0.18 0.922 PB L2
ENSG00000066136 NFYC -290830 sc-eQTL 3.44e-01 -0.186 0.195 0.922 PB L2
ENSG00000084070 SMAP2 55968 sc-eQTL 4.76e-02 -0.28 0.14 0.922 PB L2
ENSG00000084072 PPIE 708636 sc-eQTL 9.53e-01 -0.0109 0.184 0.922 PB L2
ENSG00000084073 ZMPSTE24 142582 sc-eQTL 9.54e-01 -0.00964 0.167 0.922 PB L2
ENSG00000090621 PABPC4 824028 sc-eQTL 3.11e-01 -0.113 0.111 0.922 PB L2
ENSG00000116985 BMP8B 611953 sc-eQTL 2.10e-01 0.161 0.128 0.922 PB L2
ENSG00000117000 RLF 239431 sc-eQTL 6.68e-01 -0.0889 0.206 0.922 PB L2
ENSG00000117010 ZNF684 -130755 sc-eQTL 4.08e-01 0.143 0.171 0.922 PB L2
ENSG00000131236 CAP1 360585 sc-eQTL 2.31e-01 -0.207 0.172 0.922 PB L2
ENSG00000131238 PPT1 303091 sc-eQTL 7.36e-01 0.0638 0.189 0.922 PB L2
ENSG00000164002 EXO5 -107923 sc-eQTL 6.10e-01 -0.0969 0.189 0.922 PB L2
ENSG00000171793 CTPS1 -578870 sc-eQTL 1.71e-01 0.272 0.197 0.922 PB L2
ENSG00000179862 CITED4 -461545 sc-eQTL 6.57e-01 0.0782 0.176 0.922 PB L2
ENSG00000187815 ZFP69 -76472 sc-eQTL 4.49e-01 -0.141 0.185 0.922 PB L2
ENSG00000198754 OXCT2 629470 sc-eQTL 7.43e-02 -0.296 0.164 0.922 PB L2
ENSG00000259943 AL050341.2 142851 sc-eQTL 7.52e-01 -0.0621 0.196 0.922 PB L2
ENSG00000272145 NFYC-AS1 -291248 sc-eQTL 3.36e-01 -0.178 0.184 0.922 PB L2
ENSG00000010803 SCMH1 -841336 sc-eQTL 3.75e-01 0.161 0.181 0.95 Pro_T L2
ENSG00000043514 TRIT1 517307 sc-eQTL 3.10e-01 0.191 0.187 0.95 Pro_T L2
ENSG00000066136 NFYC -290830 sc-eQTL 9.36e-01 0.0141 0.174 0.95 Pro_T L2
ENSG00000084070 SMAP2 55968 sc-eQTL 3.84e-02 -0.308 0.148 0.95 Pro_T L2
ENSG00000084072 PPIE 708636 sc-eQTL 3.10e-01 -0.175 0.172 0.95 Pro_T L2
ENSG00000084073 ZMPSTE24 142582 sc-eQTL 2.21e-01 0.181 0.147 0.95 Pro_T L2
ENSG00000090621 PABPC4 824028 sc-eQTL 4.29e-01 -0.105 0.132 0.95 Pro_T L2
ENSG00000116985 BMP8B 611953 sc-eQTL 1.07e-01 0.176 0.109 0.95 Pro_T L2
ENSG00000117000 RLF 239431 sc-eQTL 5.05e-01 0.12 0.18 0.95 Pro_T L2
ENSG00000117010 ZNF684 -130755 sc-eQTL 4.52e-01 -0.135 0.179 0.95 Pro_T L2
ENSG00000131236 CAP1 360585 sc-eQTL 3.18e-01 0.144 0.144 0.95 Pro_T L2
ENSG00000131238 PPT1 303091 sc-eQTL 8.38e-01 0.0332 0.162 0.95 Pro_T L2
ENSG00000164002 EXO5 -107923 sc-eQTL 1.92e-01 0.25 0.191 0.95 Pro_T L2
ENSG00000168389 MFSD2A 445706 sc-eQTL 5.88e-01 0.0744 0.137 0.95 Pro_T L2
ENSG00000171793 CTPS1 -578870 sc-eQTL 5.66e-01 -0.0976 0.17 0.95 Pro_T L2
ENSG00000179862 CITED4 -461545 sc-eQTL 5.09e-01 -0.106 0.16 0.95 Pro_T L2
ENSG00000187801 ZFP69B -49284 sc-eQTL 7.85e-01 0.0433 0.159 0.95 Pro_T L2
ENSG00000187815 ZFP69 -76472 sc-eQTL 3.52e-01 -0.168 0.18 0.95 Pro_T L2
ENSG00000198754 OXCT2 629470 sc-eQTL 9.99e-01 -6.84e-05 0.0931 0.95 Pro_T L2
ENSG00000259943 AL050341.2 142851 sc-eQTL 1.15e-01 -0.288 0.182 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 -291248 sc-eQTL 2.54e-01 0.202 0.176 0.95 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 83532 eQTL 0.000636 0.151 0.0441 0.00584 0.0044 0.0633
ENSG00000164002 EXO5 -107923 eQTL 1.27e-07 0.222 0.0418 0.00149 0.0 0.0633
ENSG00000171790 SLFNL1 -622419 eQTL 0.0342 0.116 0.0547 0.0 0.0 0.0633
ENSG00000187801 ZFP69B -49289 eQTL 1e-06 0.26 0.0529 0.0 0.0 0.0633
ENSG00000213172 AL031985.1 36052 eQTL 0.00102 0.178 0.054 0.0 0.0 0.0633
ENSG00000238287 AL603839.3 -107843 eQTL 0.00272 -0.251 0.0834 0.0 0.0 0.0633
ENSG00000259943 AL050341.2 142851 eQTL 0.0141 0.0957 0.0389 0.0 0.0 0.0633
ENSG00000260920 AL031985.3 -63501 eQTL 8.53e-05 0.19 0.0481 0.0 0.0 0.0633

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 83532 2.47e-05 1.28e-05 2.31e-06 3.85e-06 1.66e-06 4.14e-06 1.93e-05 7.37e-07 7.93e-06 3.16e-06 1.06e-05 4.6e-06 1.91e-05 3.78e-06 4.93e-06 5.78e-06 3.61e-06 8.11e-06 2.15e-06 1.15e-06 3.53e-06 9.52e-06 2.15e-05 1.46e-06 1.2e-05 2.12e-06 2.65e-06 1.76e-06 1.59e-05 6.65e-06 5.1e-06 5.25e-07 8.1e-07 2.3e-06 2.12e-06 1.17e-06 8.91e-07 4.36e-07 1.39e-06 6.03e-07 1.51e-07 9.11e-05 1.68e-06 1.98e-07 3.04e-07 9.77e-07 1.03e-06 2.29e-07 5.05e-07
ENSG00000117010 \N -130755 1.24e-05 9.25e-06 1.24e-06 3.05e-06 1.2e-06 2.21e-06 1.02e-05 4.13e-07 4.59e-06 2.07e-06 6.97e-06 3.34e-06 1.2e-05 2.9e-06 2.82e-06 3.81e-06 2.06e-06 3.89e-06 1.5e-06 1.28e-06 2.9e-06 7e-06 1.29e-05 1.56e-06 8.07e-06 1.31e-06 2e-06 1.46e-06 9.97e-06 4.17e-06 3.43e-06 3.1e-07 7.71e-07 1.87e-06 2.03e-06 9.24e-07 7.01e-07 4.93e-07 8.03e-07 3.28e-07 2.79e-07 5.29e-05 1.28e-06 1.89e-07 3.58e-07 9.82e-07 8.08e-07 1.7e-07 6.01e-07
ENSG00000164002 EXO5 -107923 1.55e-05 1.04e-05 1.44e-06 3.39e-06 1.53e-06 3.53e-06 1.23e-05 5.61e-07 5.53e-06 2.65e-06 8.91e-06 3.01e-06 1.48e-05 3.8e-06 3.88e-06 4.5e-06 1.92e-06 6.32e-06 1.56e-06 9.74e-07 2.65e-06 7.6e-06 1.66e-05 1.71e-06 9.38e-06 1.85e-06 2.49e-06 1.84e-06 1.3e-05 4.6e-06 4.32e-06 4.9e-07 5.47e-07 1.66e-06 1.96e-06 9.03e-07 7.83e-07 4.24e-07 1.17e-06 4.28e-07 3.45e-07 6.82e-05 1.49e-06 1.9e-07 3.82e-07 1.19e-06 1.02e-06 2.64e-07 5.43e-07
ENSG00000168389 \N 445706 1.96e-06 1.03e-06 3.45e-07 6.45e-07 9.23e-08 6.06e-07 1.63e-06 5.53e-08 9.42e-07 2.98e-07 1.41e-06 5.15e-07 2.23e-06 3.07e-07 4.48e-07 4.47e-07 3.75e-07 5.66e-07 3.66e-07 7.54e-08 2.38e-07 1.12e-06 1.79e-06 6.65e-08 1.69e-06 2.55e-07 3.04e-07 2.68e-07 1.24e-06 8.43e-07 6.29e-07 3.06e-08 5.07e-08 1.73e-07 3.41e-07 5.41e-08 5.76e-08 7.66e-08 6.45e-08 7.04e-08 4.57e-08 5.64e-06 8.31e-08 1.66e-07 4.06e-08 3.41e-08 1.45e-07 1.91e-09 5.32e-08
ENSG00000187801 ZFP69B -49289 4.56e-05 2.2e-05 2.94e-06 4.82e-06 1.82e-06 5.43e-06 3.12e-05 9.54e-07 1.05e-05 4.26e-06 1.59e-05 5.63e-06 2.89e-05 4.99e-06 5.99e-06 6.98e-06 4.98e-06 1.17e-05 2.53e-06 1.79e-06 5.14e-06 1.27e-05 3.24e-05 2.78e-06 1.65e-05 2.82e-06 4.47e-06 3.19e-06 2.43e-05 8e-06 8.13e-06 5.11e-07 1.14e-06 2.83e-06 3.56e-06 2.08e-06 9.56e-07 5.24e-07 8.1e-07 1.02e-06 4.94e-07 0.000147 2.67e-06 1.68e-07 6.1e-07 1.22e-06 1.42e-06 2.62e-07 4.49e-07
ENSG00000213172 AL031985.1 36052 5.44e-05 2.65e-05 4.04e-06 5.52e-06 2.19e-06 6.2e-06 3.87e-05 1.03e-06 1.25e-05 4.74e-06 1.88e-05 6.14e-06 3.45e-05 5.81e-06 6.45e-06 8.18e-06 6.4e-06 1.29e-05 2.66e-06 2.63e-06 6.27e-06 1.45e-05 3.71e-05 3.29e-06 1.98e-05 3.36e-06 4.82e-06 3.88e-06 3.01e-05 9.42e-06 1.01e-05 7.35e-07 1.33e-06 3.03e-06 4.54e-06 2.28e-06 1.08e-06 1.03e-06 9.49e-07 1.02e-06 7.64e-07 0.000168 2.95e-06 1.69e-07 6.96e-07 1.53e-06 1.75e-06 2.26e-07 4.86e-07
ENSG00000243970 \N 841147 8.7e-07 2.67e-07 1e-07 2.53e-07 9.87e-08 2.16e-07 3.44e-07 5.21e-08 1.71e-07 8.53e-08 1.86e-07 1.08e-07 4.54e-07 9.48e-08 6.12e-08 8.71e-08 4.09e-08 1.8e-07 7.36e-08 4.07e-08 1.18e-07 1.81e-07 3.87e-07 4.05e-08 2.74e-07 1.21e-07 1.18e-07 9.61e-08 1.37e-07 1.46e-07 1.52e-07 3.72e-08 2.92e-08 8.7e-08 3.97e-08 3.99e-08 4.51e-08 9.36e-08 8e-08 3.05e-08 4.02e-08 1.47e-06 3.19e-08 4.16e-08 7.91e-08 1.77e-08 1.11e-07 4.41e-09 4.94e-08
ENSG00000260920 AL031985.3 -63501 3.54e-05 1.69e-05 2.45e-06 4.32e-06 1.51e-06 4.71e-06 2.42e-05 9.86e-07 1e-05 4.04e-06 1.28e-05 5.17e-06 2.46e-05 4.17e-06 5.36e-06 6.36e-06 3.84e-06 9.77e-06 2.57e-06 1.4e-06 4.72e-06 1.1e-05 2.66e-05 1.96e-06 1.36e-05 2.4e-06 3.68e-06 2.34e-06 1.93e-05 7.73e-06 6.68e-06 4.15e-07 1.21e-06 2.74e-06 2.89e-06 1.54e-06 9.6e-07 5.14e-07 1.04e-06 8.85e-07 3.06e-07 0.000122 2.47e-06 1.96e-07 4.03e-07 9.43e-07 9.55e-07 1.98e-07 4.57e-07