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Genes within 1Mb (chr1:40394685:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -847469 sc-eQTL 3.81e-01 -0.169 0.192 0.949 B_Activated L2
ENSG00000043514 TRIT1 511174 sc-eQTL 5.33e-01 0.118 0.189 0.949 B_Activated L2
ENSG00000049089 COL9A2 76872 sc-eQTL 3.61e-01 0.173 0.189 0.949 B_Activated L2
ENSG00000066136 NFYC -296963 sc-eQTL 4.43e-01 0.163 0.213 0.949 B_Activated L2
ENSG00000084070 SMAP2 49835 sc-eQTL 6.14e-01 0.0542 0.107 0.949 B_Activated L2
ENSG00000084072 PPIE 702503 sc-eQTL 4.53e-01 0.144 0.191 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 136449 sc-eQTL 4.13e-01 0.167 0.203 0.949 B_Activated L2
ENSG00000090621 PABPC4 817895 sc-eQTL 6.89e-03 0.418 0.153 0.949 B_Activated L2
ENSG00000116985 BMP8B 605820 sc-eQTL 9.50e-01 -0.00699 0.111 0.949 B_Activated L2
ENSG00000117000 RLF 233298 sc-eQTL 3.69e-01 0.17 0.188 0.949 B_Activated L2
ENSG00000117010 ZNF684 -136888 sc-eQTL 3.59e-01 -0.167 0.182 0.949 B_Activated L2
ENSG00000131236 CAP1 354452 sc-eQTL 5.18e-01 -0.113 0.174 0.949 B_Activated L2
ENSG00000131238 PPT1 296958 sc-eQTL 7.07e-01 0.0807 0.215 0.949 B_Activated L2
ENSG00000164002 EXO5 -114056 sc-eQTL 6.03e-02 0.306 0.162 0.949 B_Activated L2
ENSG00000171793 CTPS1 -585003 sc-eQTL 6.60e-01 -0.0846 0.192 0.949 B_Activated L2
ENSG00000179862 CITED4 -467678 sc-eQTL 8.23e-01 0.0354 0.158 0.949 B_Activated L2
ENSG00000187815 ZFP69 -82605 sc-eQTL 5.84e-02 -0.328 0.172 0.949 B_Activated L2
ENSG00000198754 OXCT2 623337 sc-eQTL 5.69e-01 0.0981 0.172 0.949 B_Activated L2
ENSG00000259943 AL050341.2 136718 sc-eQTL 8.74e-01 0.0262 0.165 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -297381 sc-eQTL 9.90e-01 -0.00215 0.179 0.949 B_Activated L2
ENSG00000010803 SCMH1 -847469 sc-eQTL 1.64e-01 0.317 0.226 0.922 PB L2
ENSG00000043514 TRIT1 511174 sc-eQTL 6.51e-01 0.0928 0.205 0.922 PB L2
ENSG00000049089 COL9A2 76872 sc-eQTL 6.55e-01 -0.0809 0.18 0.922 PB L2
ENSG00000066136 NFYC -296963 sc-eQTL 3.44e-01 -0.186 0.195 0.922 PB L2
ENSG00000084070 SMAP2 49835 sc-eQTL 4.76e-02 -0.28 0.14 0.922 PB L2
ENSG00000084072 PPIE 702503 sc-eQTL 9.53e-01 -0.0109 0.184 0.922 PB L2
ENSG00000084073 ZMPSTE24 136449 sc-eQTL 9.54e-01 -0.00964 0.167 0.922 PB L2
ENSG00000090621 PABPC4 817895 sc-eQTL 3.11e-01 -0.113 0.111 0.922 PB L2
ENSG00000116985 BMP8B 605820 sc-eQTL 2.10e-01 0.161 0.128 0.922 PB L2
ENSG00000117000 RLF 233298 sc-eQTL 6.68e-01 -0.0889 0.206 0.922 PB L2
ENSG00000117010 ZNF684 -136888 sc-eQTL 4.08e-01 0.143 0.171 0.922 PB L2
ENSG00000131236 CAP1 354452 sc-eQTL 2.31e-01 -0.207 0.172 0.922 PB L2
ENSG00000131238 PPT1 296958 sc-eQTL 7.36e-01 0.0638 0.189 0.922 PB L2
ENSG00000164002 EXO5 -114056 sc-eQTL 6.10e-01 -0.0969 0.189 0.922 PB L2
ENSG00000171793 CTPS1 -585003 sc-eQTL 1.71e-01 0.272 0.197 0.922 PB L2
ENSG00000179862 CITED4 -467678 sc-eQTL 6.57e-01 0.0782 0.176 0.922 PB L2
ENSG00000187815 ZFP69 -82605 sc-eQTL 4.49e-01 -0.141 0.185 0.922 PB L2
ENSG00000198754 OXCT2 623337 sc-eQTL 7.43e-02 -0.296 0.164 0.922 PB L2
ENSG00000259943 AL050341.2 136718 sc-eQTL 7.52e-01 -0.0621 0.196 0.922 PB L2
ENSG00000272145 NFYC-AS1 -297381 sc-eQTL 3.36e-01 -0.178 0.184 0.922 PB L2
ENSG00000010803 SCMH1 -847469 sc-eQTL 3.75e-01 0.161 0.181 0.95 Pro_T L2
ENSG00000043514 TRIT1 511174 sc-eQTL 3.10e-01 0.191 0.187 0.95 Pro_T L2
ENSG00000066136 NFYC -296963 sc-eQTL 9.36e-01 0.0141 0.174 0.95 Pro_T L2
ENSG00000084070 SMAP2 49835 sc-eQTL 3.84e-02 -0.308 0.148 0.95 Pro_T L2
ENSG00000084072 PPIE 702503 sc-eQTL 3.10e-01 -0.175 0.172 0.95 Pro_T L2
ENSG00000084073 ZMPSTE24 136449 sc-eQTL 2.21e-01 0.181 0.147 0.95 Pro_T L2
ENSG00000090621 PABPC4 817895 sc-eQTL 4.29e-01 -0.105 0.132 0.95 Pro_T L2
ENSG00000116985 BMP8B 605820 sc-eQTL 1.07e-01 0.176 0.109 0.95 Pro_T L2
ENSG00000117000 RLF 233298 sc-eQTL 5.05e-01 0.12 0.18 0.95 Pro_T L2
ENSG00000117010 ZNF684 -136888 sc-eQTL 4.52e-01 -0.135 0.179 0.95 Pro_T L2
ENSG00000131236 CAP1 354452 sc-eQTL 3.18e-01 0.144 0.144 0.95 Pro_T L2
ENSG00000131238 PPT1 296958 sc-eQTL 8.38e-01 0.0332 0.162 0.95 Pro_T L2
ENSG00000164002 EXO5 -114056 sc-eQTL 1.92e-01 0.25 0.191 0.95 Pro_T L2
ENSG00000168389 MFSD2A 439573 sc-eQTL 5.88e-01 0.0744 0.137 0.95 Pro_T L2
ENSG00000171793 CTPS1 -585003 sc-eQTL 5.66e-01 -0.0976 0.17 0.95 Pro_T L2
ENSG00000179862 CITED4 -467678 sc-eQTL 5.09e-01 -0.106 0.16 0.95 Pro_T L2
ENSG00000187801 ZFP69B -55417 sc-eQTL 7.85e-01 0.0433 0.159 0.95 Pro_T L2
ENSG00000187815 ZFP69 -82605 sc-eQTL 3.52e-01 -0.168 0.18 0.95 Pro_T L2
ENSG00000198754 OXCT2 623337 sc-eQTL 9.99e-01 -6.84e-05 0.0931 0.95 Pro_T L2
ENSG00000259943 AL050341.2 136718 sc-eQTL 1.15e-01 -0.288 0.182 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 -297381 sc-eQTL 2.54e-01 0.202 0.176 0.95 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 77399 eQTL 0.000502 0.152 0.0435 0.00671 0.00535 0.0643
ENSG00000084073 ZMPSTE24 136449 eQTL 0.082 0.0379 0.0218 0.001 0.0 0.0643
ENSG00000164002 EXO5 -114056 eQTL 1.84e-07 0.217 0.0412 0.0011 0.0 0.0643
ENSG00000171790 SLFNL1 -628552 eQTL 0.0358 0.113 0.0539 0.0 0.0 0.0643
ENSG00000187801 ZFP69B -55422 eQTL 1.11e-06 0.256 0.0521 0.0 0.0 0.0643
ENSG00000213172 AL031985.1 29919 eQTL 0.000524 0.185 0.0532 0.0 0.0 0.0643
ENSG00000238287 AL603839.3 -113976 eQTL 0.00224 -0.252 0.0822 0.0 0.0 0.0643
ENSG00000259943 AL050341.2 136718 eQTL 0.00762 0.103 0.0384 0.0 0.0 0.0643
ENSG00000260920 AL031985.3 -69634 eQTL 0.000133 0.182 0.0475 0.0 0.0 0.0643

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 77399 4.58e-06 7.52e-06 8.1e-07 2.65e-06 4.78e-07 1.19e-06 5.92e-06 7.56e-07 4.4e-06 1.94e-06 5.73e-06 3.39e-06 9.9e-06 2.07e-06 1.43e-06 2.3e-06 2.06e-06 2.77e-06 1.42e-06 1.19e-06 2.51e-06 4.97e-06 4.66e-06 1.54e-06 6.5e-06 1.14e-06 1.79e-06 1.38e-06 4.44e-06 4.29e-06 2.64e-06 3.05e-07 6.09e-07 1.35e-06 2.09e-06 1.02e-06 7.48e-07 4.2e-07 1.3e-06 2.32e-07 3.55e-07 1.57e-05 3.81e-07 5.68e-08 3.83e-07 3.47e-07 5.64e-07 1.57e-07 1.79e-07
ENSG00000117010 \N -136888 2.13e-06 3.93e-06 2.77e-07 1.49e-06 2.98e-07 7.29e-07 1.78e-06 4.04e-07 1.77e-06 7.22e-07 2.46e-06 1.29e-06 5.05e-06 1.42e-06 5.38e-07 9.69e-07 9.73e-07 1.2e-06 6.75e-07 5.17e-07 6.39e-07 2.77e-06 3.25e-06 5.78e-07 3.48e-06 8.03e-07 1.02e-06 1.05e-06 2.06e-06 1.65e-06 1.96e-06 1.58e-07 3.55e-07 6.27e-07 9.14e-07 6.2e-07 6.79e-07 2.31e-07 4.98e-07 4.2e-08 2.84e-07 8.29e-06 3.7e-07 1.99e-08 1.69e-07 1.47e-07 2.33e-07 8.16e-08 1.18e-07
ENSG00000164002 EXO5 -114056 3.24e-06 4.89e-06 3.61e-07 2.03e-06 3.83e-07 8.62e-07 2.53e-06 4.23e-07 1.86e-06 8.15e-07 3.09e-06 1.26e-06 7.02e-06 1.54e-06 9.13e-07 1.21e-06 1.26e-06 1.92e-06 5.86e-07 5.88e-07 9.48e-07 3.29e-06 3.39e-06 8.07e-07 4.11e-06 1.12e-06 1.15e-06 1.38e-06 3.45e-06 2.23e-06 2.05e-06 2.98e-07 4.61e-07 6.23e-07 1.43e-06 9.27e-07 7.05e-07 3.16e-07 7.31e-07 2.49e-07 2.59e-07 1.15e-05 4.24e-07 5.74e-09 1.45e-07 2.32e-07 2.43e-07 8.37e-08 1.97e-07
ENSG00000168389 \N 439573 7.57e-07 8.34e-07 7.97e-08 3.19e-07 9.87e-08 1.26e-07 4.09e-07 5.56e-08 2.12e-07 1.15e-07 5.29e-07 1.59e-07 9.23e-07 1.48e-07 8.45e-08 1.26e-07 9.3e-08 2.87e-07 7.11e-08 6.02e-08 1.39e-07 3.15e-07 4e-07 3.41e-08 6.65e-07 1.76e-07 1.29e-07 1.61e-07 2.76e-07 2.89e-07 2.83e-07 3.39e-08 5.2e-08 1.03e-07 1.54e-07 5.7e-08 7.63e-08 9.03e-08 4.9e-08 4.47e-08 5.13e-08 1.56e-06 3.02e-08 1.26e-08 5.15e-08 6.83e-09 7.61e-08 3.8e-09 4.9e-08
ENSG00000187801 ZFP69B -55422 6.87e-06 9.91e-06 6.31e-07 3.85e-06 1.32e-06 1.54e-06 9.61e-06 9.98e-07 4.75e-06 2.84e-06 9.18e-06 3.05e-06 1.34e-05 3.86e-06 1.4e-06 3.9e-06 2.94e-06 3.76e-06 1.49e-06 1.17e-06 2.73e-06 7.4e-06 6.85e-06 1.4e-06 9.69e-06 1.99e-06 2.27e-06 1.74e-06 7e-06 7.44e-06 4.57e-06 5.76e-07 5.68e-07 1.71e-06 2.16e-06 1.32e-06 9.24e-07 4.93e-07 9.5e-07 3.28e-07 1.52e-07 2e-05 6.59e-07 1.75e-07 4.18e-07 6.75e-07 6.8e-07 2.47e-07 3.73e-07
ENSG00000213172 AL031985.1 29919 1.41e-05 2.05e-05 2.16e-06 7.79e-06 2.44e-06 5.08e-06 1.87e-05 1.92e-06 1.18e-05 5.31e-06 1.79e-05 6.53e-06 2.79e-05 5.36e-06 3.5e-06 6.6e-06 6.42e-06 9.66e-06 3.28e-06 2.82e-06 6.31e-06 1.18e-05 1.43e-05 3.35e-06 2.05e-05 3.98e-06 5.93e-06 4.45e-06 1.45e-05 1.19e-05 1.01e-05 7.78e-07 8.75e-07 2.93e-06 5.33e-06 2.81e-06 1.56e-06 1.6e-06 2.25e-06 9.87e-07 6.18e-07 3.02e-05 1.59e-06 1.66e-07 7.18e-07 1.63e-06 1.02e-06 6.58e-07 4.4e-07
ENSG00000260920 AL031985.3 -69634 5.17e-06 9.04e-06 8.13e-07 3.09e-06 7.65e-07 1.57e-06 7.57e-06 9.02e-07 5.13e-06 2.35e-06 6.77e-06 3.35e-06 1.12e-05 2.79e-06 1.09e-06 2.68e-06 1.87e-06 3.51e-06 1.28e-06 8.79e-07 2.88e-06 4.98e-06 5.37e-06 1.82e-06 8.07e-06 1.34e-06 2.35e-06 1.78e-06 5.11e-06 4.73e-06 3.37e-06 4.14e-07 7.95e-07 1.61e-06 2.04e-06 9.53e-07 8.91e-07 4.22e-07 1.06e-06 3.32e-07 2.88e-07 1.71e-05 4.2e-07 9.64e-08 3.12e-07 3.62e-07 8.29e-07 2.49e-07 1.75e-07