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Genes within 1Mb (chr1:40393011:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -849143 sc-eQTL 3.81e-01 -0.169 0.192 0.949 B_Activated L2
ENSG00000043514 TRIT1 509500 sc-eQTL 5.33e-01 0.118 0.189 0.949 B_Activated L2
ENSG00000049089 COL9A2 75198 sc-eQTL 3.61e-01 0.173 0.189 0.949 B_Activated L2
ENSG00000066136 NFYC -298637 sc-eQTL 4.43e-01 0.163 0.213 0.949 B_Activated L2
ENSG00000084070 SMAP2 48161 sc-eQTL 6.14e-01 0.0542 0.107 0.949 B_Activated L2
ENSG00000084072 PPIE 700829 sc-eQTL 4.53e-01 0.144 0.191 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 134775 sc-eQTL 4.13e-01 0.167 0.203 0.949 B_Activated L2
ENSG00000090621 PABPC4 816221 sc-eQTL 6.89e-03 0.418 0.153 0.949 B_Activated L2
ENSG00000116985 BMP8B 604146 sc-eQTL 9.50e-01 -0.00699 0.111 0.949 B_Activated L2
ENSG00000117000 RLF 231624 sc-eQTL 3.69e-01 0.17 0.188 0.949 B_Activated L2
ENSG00000117010 ZNF684 -138562 sc-eQTL 3.59e-01 -0.167 0.182 0.949 B_Activated L2
ENSG00000131236 CAP1 352778 sc-eQTL 5.18e-01 -0.113 0.174 0.949 B_Activated L2
ENSG00000131238 PPT1 295284 sc-eQTL 7.07e-01 0.0807 0.215 0.949 B_Activated L2
ENSG00000164002 EXO5 -115730 sc-eQTL 6.03e-02 0.306 0.162 0.949 B_Activated L2
ENSG00000171793 CTPS1 -586677 sc-eQTL 6.60e-01 -0.0846 0.192 0.949 B_Activated L2
ENSG00000179862 CITED4 -469352 sc-eQTL 8.23e-01 0.0354 0.158 0.949 B_Activated L2
ENSG00000187815 ZFP69 -84279 sc-eQTL 5.84e-02 -0.328 0.172 0.949 B_Activated L2
ENSG00000198754 OXCT2 621663 sc-eQTL 5.69e-01 0.0981 0.172 0.949 B_Activated L2
ENSG00000259943 AL050341.2 135044 sc-eQTL 8.74e-01 0.0262 0.165 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -299055 sc-eQTL 9.90e-01 -0.00215 0.179 0.949 B_Activated L2
ENSG00000010803 SCMH1 -849143 sc-eQTL 1.64e-01 0.317 0.226 0.922 PB L2
ENSG00000043514 TRIT1 509500 sc-eQTL 6.51e-01 0.0928 0.205 0.922 PB L2
ENSG00000049089 COL9A2 75198 sc-eQTL 6.55e-01 -0.0809 0.18 0.922 PB L2
ENSG00000066136 NFYC -298637 sc-eQTL 3.44e-01 -0.186 0.195 0.922 PB L2
ENSG00000084070 SMAP2 48161 sc-eQTL 4.76e-02 -0.28 0.14 0.922 PB L2
ENSG00000084072 PPIE 700829 sc-eQTL 9.53e-01 -0.0109 0.184 0.922 PB L2
ENSG00000084073 ZMPSTE24 134775 sc-eQTL 9.54e-01 -0.00964 0.167 0.922 PB L2
ENSG00000090621 PABPC4 816221 sc-eQTL 3.11e-01 -0.113 0.111 0.922 PB L2
ENSG00000116985 BMP8B 604146 sc-eQTL 2.10e-01 0.161 0.128 0.922 PB L2
ENSG00000117000 RLF 231624 sc-eQTL 6.68e-01 -0.0889 0.206 0.922 PB L2
ENSG00000117010 ZNF684 -138562 sc-eQTL 4.08e-01 0.143 0.171 0.922 PB L2
ENSG00000131236 CAP1 352778 sc-eQTL 2.31e-01 -0.207 0.172 0.922 PB L2
ENSG00000131238 PPT1 295284 sc-eQTL 7.36e-01 0.0638 0.189 0.922 PB L2
ENSG00000164002 EXO5 -115730 sc-eQTL 6.10e-01 -0.0969 0.189 0.922 PB L2
ENSG00000171793 CTPS1 -586677 sc-eQTL 1.71e-01 0.272 0.197 0.922 PB L2
ENSG00000179862 CITED4 -469352 sc-eQTL 6.57e-01 0.0782 0.176 0.922 PB L2
ENSG00000187815 ZFP69 -84279 sc-eQTL 4.49e-01 -0.141 0.185 0.922 PB L2
ENSG00000198754 OXCT2 621663 sc-eQTL 7.43e-02 -0.296 0.164 0.922 PB L2
ENSG00000259943 AL050341.2 135044 sc-eQTL 7.52e-01 -0.0621 0.196 0.922 PB L2
ENSG00000272145 NFYC-AS1 -299055 sc-eQTL 3.36e-01 -0.178 0.184 0.922 PB L2
ENSG00000010803 SCMH1 -849143 sc-eQTL 3.75e-01 0.161 0.181 0.95 Pro_T L2
ENSG00000043514 TRIT1 509500 sc-eQTL 3.10e-01 0.191 0.187 0.95 Pro_T L2
ENSG00000066136 NFYC -298637 sc-eQTL 9.36e-01 0.0141 0.174 0.95 Pro_T L2
ENSG00000084070 SMAP2 48161 sc-eQTL 3.84e-02 -0.308 0.148 0.95 Pro_T L2
ENSG00000084072 PPIE 700829 sc-eQTL 3.10e-01 -0.175 0.172 0.95 Pro_T L2
ENSG00000084073 ZMPSTE24 134775 sc-eQTL 2.21e-01 0.181 0.147 0.95 Pro_T L2
ENSG00000090621 PABPC4 816221 sc-eQTL 4.29e-01 -0.105 0.132 0.95 Pro_T L2
ENSG00000116985 BMP8B 604146 sc-eQTL 1.07e-01 0.176 0.109 0.95 Pro_T L2
ENSG00000117000 RLF 231624 sc-eQTL 5.05e-01 0.12 0.18 0.95 Pro_T L2
ENSG00000117010 ZNF684 -138562 sc-eQTL 4.52e-01 -0.135 0.179 0.95 Pro_T L2
ENSG00000131236 CAP1 352778 sc-eQTL 3.18e-01 0.144 0.144 0.95 Pro_T L2
ENSG00000131238 PPT1 295284 sc-eQTL 8.38e-01 0.0332 0.162 0.95 Pro_T L2
ENSG00000164002 EXO5 -115730 sc-eQTL 1.92e-01 0.25 0.191 0.95 Pro_T L2
ENSG00000168389 MFSD2A 437899 sc-eQTL 5.88e-01 0.0744 0.137 0.95 Pro_T L2
ENSG00000171793 CTPS1 -586677 sc-eQTL 5.66e-01 -0.0976 0.17 0.95 Pro_T L2
ENSG00000179862 CITED4 -469352 sc-eQTL 5.09e-01 -0.106 0.16 0.95 Pro_T L2
ENSG00000187801 ZFP69B -57091 sc-eQTL 7.85e-01 0.0433 0.159 0.95 Pro_T L2
ENSG00000187815 ZFP69 -84279 sc-eQTL 3.52e-01 -0.168 0.18 0.95 Pro_T L2
ENSG00000198754 OXCT2 621663 sc-eQTL 9.99e-01 -6.84e-05 0.0931 0.95 Pro_T L2
ENSG00000259943 AL050341.2 135044 sc-eQTL 1.15e-01 -0.288 0.182 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 -299055 sc-eQTL 2.54e-01 0.202 0.176 0.95 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 75725 eQTL 0.000502 0.152 0.0435 0.00671 0.00536 0.0643
ENSG00000084073 ZMPSTE24 134775 eQTL 0.082 0.0379 0.0218 0.001 0.0 0.0643
ENSG00000164002 EXO5 -115730 eQTL 1.84e-07 0.217 0.0412 0.0011 0.0 0.0643
ENSG00000171790 SLFNL1 -630226 eQTL 0.0358 0.113 0.0539 0.0 0.0 0.0643
ENSG00000187801 ZFP69B -57096 eQTL 1.11e-06 0.256 0.0521 0.0 0.0 0.0643
ENSG00000213172 AL031985.1 28245 eQTL 0.000524 0.185 0.0532 0.0 0.0 0.0643
ENSG00000238287 AL603839.3 -115650 eQTL 0.00224 -0.252 0.0822 0.0 0.0 0.0643
ENSG00000259943 AL050341.2 135044 eQTL 0.00762 0.103 0.0384 0.0 0.0 0.0643
ENSG00000260920 AL031985.3 -71308 eQTL 0.000133 0.182 0.0475 0.0 0.0 0.0643

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 75725 2.26e-05 9.5e-06 6.59e-07 5.5e-06 1.71e-06 6.32e-06 7.61e-06 1.22e-06 4.65e-06 3.1e-06 8.09e-06 3.63e-06 1.11e-05 2.85e-06 1.04e-06 5.77e-06 2.76e-06 6.22e-06 1.41e-06 1.13e-06 2.75e-06 7.51e-06 5.44e-06 1.41e-06 1.27e-05 1.98e-06 4.22e-06 1.79e-06 4.46e-06 6.66e-06 3.4e-06 4.91e-07 5.88e-07 1.52e-06 3.5e-06 9.62e-07 9.38e-07 4.57e-07 1.05e-06 5.64e-07 2.11e-07 1.25e-05 1.45e-06 1.8e-07 4.13e-07 3.58e-07 9.63e-07 2.44e-07 2.04e-07
ENSG00000117010 \N -138562 1.05e-05 5.05e-06 5.8e-07 3.85e-06 6.1e-07 4.18e-06 2.77e-06 9.86e-07 3.17e-06 1.6e-06 4.2e-06 3.04e-06 7.51e-06 2.25e-06 9.02e-07 3.03e-06 1.56e-06 3.49e-06 9.64e-07 1.29e-06 1.43e-06 4.42e-06 3.4e-06 1.15e-06 7.97e-06 1.21e-06 2.57e-06 1.44e-06 2.76e-06 3.41e-06 2.01e-06 3.8e-07 2.67e-07 1.29e-06 2.03e-06 6.07e-07 8.44e-07 4.3e-07 8.73e-07 3.28e-07 3.53e-07 7.99e-06 5.62e-07 1.67e-07 3.43e-07 3.15e-07 8.07e-07 6.02e-08 2.03e-07
ENSG00000164002 EXO5 -115730 1.27e-05 5.68e-06 7.43e-07 4.3e-06 8.47e-07 4.74e-06 3.96e-06 9.93e-07 4.8e-06 2.11e-06 5.21e-06 3.54e-06 7.72e-06 1.94e-06 1.26e-06 3.73e-06 2.02e-06 4.03e-06 1.48e-06 1.21e-06 1.92e-06 4.9e-06 4.37e-06 1.64e-06 8.8e-06 1.21e-06 2.22e-06 1.79e-06 3.77e-06 4.23e-06 2.79e-06 4.71e-07 3.24e-07 1.59e-06 1.93e-06 6.3e-07 8.38e-07 4.73e-07 1.17e-06 3.8e-07 2.87e-07 8.14e-06 8.16e-07 1.86e-07 3.83e-07 3.66e-07 9.74e-07 1.57e-07 2.86e-07
ENSG00000168389 \N 437899 1.2e-06 6.97e-07 9.16e-08 3.6e-07 1.11e-07 4.39e-07 5.28e-07 9.07e-08 3.62e-07 1.5e-07 5.58e-07 3.27e-07 7.02e-07 1.49e-07 1.24e-07 2.45e-07 2.25e-07 3.95e-07 1.27e-07 1.15e-07 1.89e-07 3.92e-07 3.11e-07 9.63e-08 8.62e-07 1.9e-07 3.16e-07 1.54e-07 2.13e-07 5.36e-07 2e-07 7.33e-08 4.87e-08 1.17e-07 3.38e-07 4.77e-08 1.83e-07 1.13e-07 4.9e-08 5.96e-08 4.79e-08 7.36e-07 1.22e-07 8.04e-08 2.82e-08 9.49e-09 1.11e-07 2.02e-09 4.83e-08
ENSG00000187801 ZFP69B -57096 4.04e-05 9.43e-06 1e-06 6.41e-06 1.9e-06 8.25e-06 9.67e-06 1.5e-06 6.09e-06 4.1e-06 9.93e-06 4.97e-06 1.3e-05 3.81e-06 1.54e-06 6.41e-06 3.67e-06 9.38e-06 1.5e-06 1.54e-06 3.2e-06 8.24e-06 6.85e-06 1.89e-06 1.58e-05 2.19e-06 4.77e-06 1.53e-06 6.27e-06 7.86e-06 4.07e-06 4.02e-07 7.09e-07 2.26e-06 4.59e-06 9.97e-07 9.73e-07 4.82e-07 8.39e-07 8.74e-07 4.03e-07 1.45e-05 2.34e-06 1.6e-07 6.1e-07 9.32e-07 1.27e-06 2.35e-07 1.92e-07
ENSG00000213172 AL031985.1 28245 9.68e-05 1.27e-05 1.56e-06 8.87e-06 2.42e-06 1.48e-05 1.46e-05 2.2e-06 1.06e-05 5.8e-06 1.49e-05 6.66e-06 2.21e-05 4.21e-06 3.95e-06 9.02e-06 7.26e-06 1.91e-05 2.66e-06 2.8e-06 6.81e-06 1.35e-05 1.36e-05 3.23e-06 2.46e-05 4.6e-06 7.34e-06 3.88e-06 1.16e-05 1.25e-05 6.74e-06 6.75e-07 9.16e-07 3.29e-06 6.2e-06 2.08e-06 1.57e-06 1.86e-06 1.89e-06 1.08e-06 1.02e-06 2.19e-05 3.44e-06 1.6e-07 8.22e-07 1.32e-06 2.18e-06 7.35e-07 5.13e-07
ENSG00000260920 AL031985.3 -71308 2.55e-05 9.27e-06 6.33e-07 5.63e-06 1.54e-06 6.77e-06 8.23e-06 1.25e-06 4.79e-06 3.15e-06 8.47e-06 3.84e-06 1.14e-05 3.18e-06 9.19e-07 5.82e-06 2.92e-06 6.85e-06 1.57e-06 1.19e-06 2.67e-06 7.66e-06 5.59e-06 1.49e-06 1.3e-05 2.01e-06 4.39e-06 1.65e-06 4.49e-06 7.09e-06 3.36e-06 5.42e-07 5.05e-07 1.66e-06 3.56e-06 9.5e-07 9.31e-07 4.39e-07 1.04e-06 6.99e-07 2.4e-07 1.27e-05 1.64e-06 1.8e-07 4.33e-07 4.12e-07 9.03e-07 2.21e-07 1.53e-07