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Genes within 1Mb (chr1:40390019:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -852135 sc-eQTL 3.81e-01 -0.169 0.192 0.949 B_Activated L2
ENSG00000043514 TRIT1 506508 sc-eQTL 5.33e-01 0.118 0.189 0.949 B_Activated L2
ENSG00000049089 COL9A2 72206 sc-eQTL 3.61e-01 0.173 0.189 0.949 B_Activated L2
ENSG00000066136 NFYC -301629 sc-eQTL 4.43e-01 0.163 0.213 0.949 B_Activated L2
ENSG00000084070 SMAP2 45169 sc-eQTL 6.14e-01 0.0542 0.107 0.949 B_Activated L2
ENSG00000084072 PPIE 697837 sc-eQTL 4.53e-01 0.144 0.191 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 131783 sc-eQTL 4.13e-01 0.167 0.203 0.949 B_Activated L2
ENSG00000090621 PABPC4 813229 sc-eQTL 6.89e-03 0.418 0.153 0.949 B_Activated L2
ENSG00000116985 BMP8B 601154 sc-eQTL 9.50e-01 -0.00699 0.111 0.949 B_Activated L2
ENSG00000117000 RLF 228632 sc-eQTL 3.69e-01 0.17 0.188 0.949 B_Activated L2
ENSG00000117010 ZNF684 -141554 sc-eQTL 3.59e-01 -0.167 0.182 0.949 B_Activated L2
ENSG00000131236 CAP1 349786 sc-eQTL 5.18e-01 -0.113 0.174 0.949 B_Activated L2
ENSG00000131238 PPT1 292292 sc-eQTL 7.07e-01 0.0807 0.215 0.949 B_Activated L2
ENSG00000164002 EXO5 -118722 sc-eQTL 6.03e-02 0.306 0.162 0.949 B_Activated L2
ENSG00000171793 CTPS1 -589669 sc-eQTL 6.60e-01 -0.0846 0.192 0.949 B_Activated L2
ENSG00000179862 CITED4 -472344 sc-eQTL 8.23e-01 0.0354 0.158 0.949 B_Activated L2
ENSG00000187815 ZFP69 -87271 sc-eQTL 5.84e-02 -0.328 0.172 0.949 B_Activated L2
ENSG00000198754 OXCT2 618671 sc-eQTL 5.69e-01 0.0981 0.172 0.949 B_Activated L2
ENSG00000259943 AL050341.2 132052 sc-eQTL 8.74e-01 0.0262 0.165 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -302047 sc-eQTL 9.90e-01 -0.00215 0.179 0.949 B_Activated L2
ENSG00000010803 SCMH1 -852135 sc-eQTL 1.64e-01 0.317 0.226 0.922 PB L2
ENSG00000043514 TRIT1 506508 sc-eQTL 6.51e-01 0.0928 0.205 0.922 PB L2
ENSG00000049089 COL9A2 72206 sc-eQTL 6.55e-01 -0.0809 0.18 0.922 PB L2
ENSG00000066136 NFYC -301629 sc-eQTL 3.44e-01 -0.186 0.195 0.922 PB L2
ENSG00000084070 SMAP2 45169 sc-eQTL 4.76e-02 -0.28 0.14 0.922 PB L2
ENSG00000084072 PPIE 697837 sc-eQTL 9.53e-01 -0.0109 0.184 0.922 PB L2
ENSG00000084073 ZMPSTE24 131783 sc-eQTL 9.54e-01 -0.00964 0.167 0.922 PB L2
ENSG00000090621 PABPC4 813229 sc-eQTL 3.11e-01 -0.113 0.111 0.922 PB L2
ENSG00000116985 BMP8B 601154 sc-eQTL 2.10e-01 0.161 0.128 0.922 PB L2
ENSG00000117000 RLF 228632 sc-eQTL 6.68e-01 -0.0889 0.206 0.922 PB L2
ENSG00000117010 ZNF684 -141554 sc-eQTL 4.08e-01 0.143 0.171 0.922 PB L2
ENSG00000131236 CAP1 349786 sc-eQTL 2.31e-01 -0.207 0.172 0.922 PB L2
ENSG00000131238 PPT1 292292 sc-eQTL 7.36e-01 0.0638 0.189 0.922 PB L2
ENSG00000164002 EXO5 -118722 sc-eQTL 6.10e-01 -0.0969 0.189 0.922 PB L2
ENSG00000171793 CTPS1 -589669 sc-eQTL 1.71e-01 0.272 0.197 0.922 PB L2
ENSG00000179862 CITED4 -472344 sc-eQTL 6.57e-01 0.0782 0.176 0.922 PB L2
ENSG00000187815 ZFP69 -87271 sc-eQTL 4.49e-01 -0.141 0.185 0.922 PB L2
ENSG00000198754 OXCT2 618671 sc-eQTL 7.43e-02 -0.296 0.164 0.922 PB L2
ENSG00000259943 AL050341.2 132052 sc-eQTL 7.52e-01 -0.0621 0.196 0.922 PB L2
ENSG00000272145 NFYC-AS1 -302047 sc-eQTL 3.36e-01 -0.178 0.184 0.922 PB L2
ENSG00000010803 SCMH1 -852135 sc-eQTL 3.75e-01 0.161 0.181 0.95 Pro_T L2
ENSG00000043514 TRIT1 506508 sc-eQTL 3.10e-01 0.191 0.187 0.95 Pro_T L2
ENSG00000066136 NFYC -301629 sc-eQTL 9.36e-01 0.0141 0.174 0.95 Pro_T L2
ENSG00000084070 SMAP2 45169 sc-eQTL 3.84e-02 -0.308 0.148 0.95 Pro_T L2
ENSG00000084072 PPIE 697837 sc-eQTL 3.10e-01 -0.175 0.172 0.95 Pro_T L2
ENSG00000084073 ZMPSTE24 131783 sc-eQTL 2.21e-01 0.181 0.147 0.95 Pro_T L2
ENSG00000090621 PABPC4 813229 sc-eQTL 4.29e-01 -0.105 0.132 0.95 Pro_T L2
ENSG00000116985 BMP8B 601154 sc-eQTL 1.07e-01 0.176 0.109 0.95 Pro_T L2
ENSG00000117000 RLF 228632 sc-eQTL 5.05e-01 0.12 0.18 0.95 Pro_T L2
ENSG00000117010 ZNF684 -141554 sc-eQTL 4.52e-01 -0.135 0.179 0.95 Pro_T L2
ENSG00000131236 CAP1 349786 sc-eQTL 3.18e-01 0.144 0.144 0.95 Pro_T L2
ENSG00000131238 PPT1 292292 sc-eQTL 8.38e-01 0.0332 0.162 0.95 Pro_T L2
ENSG00000164002 EXO5 -118722 sc-eQTL 1.92e-01 0.25 0.191 0.95 Pro_T L2
ENSG00000168389 MFSD2A 434907 sc-eQTL 5.88e-01 0.0744 0.137 0.95 Pro_T L2
ENSG00000171793 CTPS1 -589669 sc-eQTL 5.66e-01 -0.0976 0.17 0.95 Pro_T L2
ENSG00000179862 CITED4 -472344 sc-eQTL 5.09e-01 -0.106 0.16 0.95 Pro_T L2
ENSG00000187801 ZFP69B -60083 sc-eQTL 7.85e-01 0.0433 0.159 0.95 Pro_T L2
ENSG00000187815 ZFP69 -87271 sc-eQTL 3.52e-01 -0.168 0.18 0.95 Pro_T L2
ENSG00000198754 OXCT2 618671 sc-eQTL 9.99e-01 -6.84e-05 0.0931 0.95 Pro_T L2
ENSG00000259943 AL050341.2 132052 sc-eQTL 1.15e-01 -0.288 0.182 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 -302047 sc-eQTL 2.54e-01 0.202 0.176 0.95 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 72733 eQTL 0.000538 0.151 0.0434 0.00644 0.00505 0.0643
ENSG00000164002 EXO5 -118722 eQTL 2.05e-07 0.215 0.0411 0.00104 0.0 0.0643
ENSG00000171790 SLFNL1 -633218 eQTL 0.0345 0.114 0.0538 0.0 0.0 0.0643
ENSG00000187801 ZFP69B -60088 eQTL 1.13e-06 0.255 0.052 0.0 0.0 0.0643
ENSG00000213172 AL031985.1 25253 eQTL 0.000493 0.186 0.0531 0.0 0.0 0.0643
ENSG00000238287 AL603839.3 -118642 eQTL 0.0022 -0.252 0.082 0.0 0.0 0.0643
ENSG00000259943 AL050341.2 132052 eQTL 0.00857 0.101 0.0383 0.0 0.0 0.0643
ENSG00000260920 AL031985.3 -74300 eQTL 0.000136 0.182 0.0474 0.0 0.0 0.0643

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 72733 1.12e-05 5e-06 1.32e-06 3.75e-06 9.65e-07 1.53e-06 5.03e-06 3.86e-07 2.88e-06 1.17e-06 4.13e-06 1.9e-06 9.94e-06 1.49e-06 1.3e-06 2.34e-06 1.45e-06 3.26e-06 1.47e-06 1.58e-06 3.15e-06 5.5e-06 4.93e-06 1.87e-06 4.32e-06 1.36e-06 1.63e-06 1.73e-06 4.41e-06 2.5e-06 2.01e-06 5.77e-07 8.01e-07 2.88e-06 2.19e-06 8.84e-07 9.28e-07 4.92e-07 8.26e-07 1.19e-06 9.82e-07 8.25e-06 1.38e-06 1.74e-07 5.92e-07 1.48e-06 1.09e-06 2.44e-07 4.68e-07
ENSG00000117010 \N -141554 1.32e-06 6.09e-07 9.49e-08 3.25e-07 1.05e-07 3.12e-07 6.52e-07 5.82e-08 3.03e-07 1.7e-07 5.58e-07 3.48e-07 1.23e-06 1.07e-07 2.07e-07 1.92e-07 6.81e-08 3.3e-07 2.57e-07 1.32e-07 2.01e-07 5.83e-07 6.18e-07 4.81e-08 4.54e-07 1.71e-07 1.74e-07 2.13e-07 4.22e-07 3.15e-07 1.59e-07 3.51e-08 2.34e-07 5.24e-07 3.4e-07 6.52e-08 3.12e-07 7.62e-08 7.42e-08 1.67e-07 2.8e-07 1.09e-06 6.37e-08 1.88e-08 4.06e-08 4.48e-08 1.21e-07 0.0 4.55e-08
ENSG00000164002 EXO5 -118722 2.13e-06 9.55e-07 3.32e-07 1.29e-06 1.07e-07 5.99e-07 1.63e-06 9.69e-08 8.92e-07 2.98e-07 1.26e-06 5.73e-07 2.5e-06 2.19e-07 4.28e-07 5.49e-07 4.3e-07 5.66e-07 7.73e-07 6.44e-07 4.48e-07 1.69e-06 1.14e-06 2.71e-07 1.47e-06 2.68e-07 4.83e-07 5.27e-07 1.25e-06 8.89e-07 3.66e-07 2.81e-07 3.7e-07 6.66e-07 4.34e-07 3.92e-07 6.69e-07 1.39e-07 4.26e-07 3.34e-07 3.04e-07 1.8e-06 1.67e-07 2.65e-08 1.96e-07 2.35e-07 2.33e-07 2.41e-08 5.95e-08
ENSG00000168389 \N 434907 2.56e-07 1.16e-07 3.49e-08 1.67e-07 1.03e-07 8.95e-08 1.31e-07 5.29e-08 1.33e-07 3.99e-08 1.55e-07 7.4e-08 1.19e-07 6.1e-08 4.48e-08 7.4e-08 5.2e-08 1.02e-07 4.91e-08 2.93e-08 1.04e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.08e-07 9.43e-08 3.29e-08 2.6e-08 8.21e-08 1.06e-07 4.32e-08 3.84e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.43e-07 4.51e-08 0.0 1.15e-07 1.86e-08 1.47e-07 4.96e-09 4.72e-08
ENSG00000187801 ZFP69B -60088 2.51e-05 9.27e-06 2.16e-06 5.82e-06 1.66e-06 3.93e-06 9.67e-06 8.31e-07 4.54e-06 2.35e-06 7.57e-06 3.35e-06 1.4e-05 2.13e-06 9.83e-07 3.99e-06 1.92e-06 3.97e-06 2.11e-06 2.85e-06 4.11e-06 8.59e-06 8.25e-06 2e-06 7.87e-06 1.36e-06 2.24e-06 2.43e-06 7.59e-06 4.23e-06 2.75e-06 8.91e-07 1.25e-06 3.69e-06 2.56e-06 1.61e-06 1.08e-06 4.82e-07 1.32e-06 1.72e-06 1.01e-06 1.45e-05 2.6e-06 1.69e-07 7.16e-07 2.08e-06 8.75e-07 2.72e-07 4.39e-07
ENSG00000213172 AL031985.1 25253 0.000134 5.45e-05 7.74e-06 1.4e-05 5.33e-06 1.36e-05 5.89e-05 3.34e-06 2.55e-05 8.72e-06 4.22e-05 1.11e-05 5.48e-05 1.36e-05 7.62e-06 1.61e-05 1.03e-05 3e-05 8.04e-06 6.18e-06 1.27e-05 4.67e-05 4.96e-05 9.82e-06 3.56e-05 5.58e-06 1.31e-05 1.07e-05 4.2e-05 1.69e-05 1.33e-05 1.05e-06 2e-06 6.04e-06 7.8e-06 4.46e-06 1.79e-06 2.51e-06 3.56e-06 2.01e-06 1.29e-06 7.99e-05 7.15e-06 3.78e-07 2.7e-06 5.23e-06 3.8e-06 6.52e-07 1.33e-06
ENSG00000243970 \N 830348 2.56e-07 1.16e-07 3.49e-08 1.67e-07 1.03e-07 8.95e-08 1.31e-07 5.29e-08 1.33e-07 3.99e-08 1.55e-07 7.4e-08 1.19e-07 6.1e-08 4.48e-08 7.4e-08 5.2e-08 1.02e-07 4.91e-08 2.93e-08 1.04e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.08e-07 9.43e-08 3.29e-08 2.6e-08 8.21e-08 1.06e-07 4.32e-08 3.84e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.43e-07 4.51e-08 0.0 1.15e-07 1.86e-08 1.47e-07 4.96e-09 4.72e-08
ENSG00000260920 AL031985.3 -74300 1.05e-05 4.86e-06 9.77e-07 3.69e-06 8.78e-07 1.56e-06 4.29e-06 4.34e-07 2.68e-06 1.11e-06 3.71e-06 1.74e-06 9.42e-06 1.3e-06 1.06e-06 1.99e-06 1.26e-06 2.88e-06 1.41e-06 1.4e-06 2.88e-06 5.39e-06 4.66e-06 1.82e-06 4.05e-06 1.26e-06 1.53e-06 1.78e-06 4.53e-06 2.23e-06 1.86e-06 5.84e-07 7.79e-07 2.78e-06 2.03e-06 9.79e-07 9.99e-07 4.73e-07 8.31e-07 1.11e-06 9.55e-07 8.26e-06 1.39e-06 1.6e-07 5.95e-07 1.29e-06 1.05e-06 2.26e-07 4.39e-07