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Genes within 1Mb (chr1:40388137:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -854017 sc-eQTL 3.81e-01 -0.169 0.192 0.949 B_Activated L2
ENSG00000043514 TRIT1 504626 sc-eQTL 5.33e-01 0.118 0.189 0.949 B_Activated L2
ENSG00000049089 COL9A2 70324 sc-eQTL 3.61e-01 0.173 0.189 0.949 B_Activated L2
ENSG00000066136 NFYC -303511 sc-eQTL 4.43e-01 0.163 0.213 0.949 B_Activated L2
ENSG00000084070 SMAP2 43287 sc-eQTL 6.14e-01 0.0542 0.107 0.949 B_Activated L2
ENSG00000084072 PPIE 695955 sc-eQTL 4.53e-01 0.144 0.191 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 129901 sc-eQTL 4.13e-01 0.167 0.203 0.949 B_Activated L2
ENSG00000090621 PABPC4 811347 sc-eQTL 6.89e-03 0.418 0.153 0.949 B_Activated L2
ENSG00000116985 BMP8B 599272 sc-eQTL 9.50e-01 -0.00699 0.111 0.949 B_Activated L2
ENSG00000117000 RLF 226750 sc-eQTL 3.69e-01 0.17 0.188 0.949 B_Activated L2
ENSG00000117010 ZNF684 -143436 sc-eQTL 3.59e-01 -0.167 0.182 0.949 B_Activated L2
ENSG00000131236 CAP1 347904 sc-eQTL 5.18e-01 -0.113 0.174 0.949 B_Activated L2
ENSG00000131238 PPT1 290410 sc-eQTL 7.07e-01 0.0807 0.215 0.949 B_Activated L2
ENSG00000164002 EXO5 -120604 sc-eQTL 6.03e-02 0.306 0.162 0.949 B_Activated L2
ENSG00000171793 CTPS1 -591551 sc-eQTL 6.60e-01 -0.0846 0.192 0.949 B_Activated L2
ENSG00000179862 CITED4 -474226 sc-eQTL 8.23e-01 0.0354 0.158 0.949 B_Activated L2
ENSG00000187815 ZFP69 -89153 sc-eQTL 5.84e-02 -0.328 0.172 0.949 B_Activated L2
ENSG00000198754 OXCT2 616789 sc-eQTL 5.69e-01 0.0981 0.172 0.949 B_Activated L2
ENSG00000259943 AL050341.2 130170 sc-eQTL 8.74e-01 0.0262 0.165 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -303929 sc-eQTL 9.90e-01 -0.00215 0.179 0.949 B_Activated L2
ENSG00000010803 SCMH1 -854017 sc-eQTL 1.64e-01 0.317 0.226 0.922 PB L2
ENSG00000043514 TRIT1 504626 sc-eQTL 6.51e-01 0.0928 0.205 0.922 PB L2
ENSG00000049089 COL9A2 70324 sc-eQTL 6.55e-01 -0.0809 0.18 0.922 PB L2
ENSG00000066136 NFYC -303511 sc-eQTL 3.44e-01 -0.186 0.195 0.922 PB L2
ENSG00000084070 SMAP2 43287 sc-eQTL 4.76e-02 -0.28 0.14 0.922 PB L2
ENSG00000084072 PPIE 695955 sc-eQTL 9.53e-01 -0.0109 0.184 0.922 PB L2
ENSG00000084073 ZMPSTE24 129901 sc-eQTL 9.54e-01 -0.00964 0.167 0.922 PB L2
ENSG00000090621 PABPC4 811347 sc-eQTL 3.11e-01 -0.113 0.111 0.922 PB L2
ENSG00000116985 BMP8B 599272 sc-eQTL 2.10e-01 0.161 0.128 0.922 PB L2
ENSG00000117000 RLF 226750 sc-eQTL 6.68e-01 -0.0889 0.206 0.922 PB L2
ENSG00000117010 ZNF684 -143436 sc-eQTL 4.08e-01 0.143 0.171 0.922 PB L2
ENSG00000131236 CAP1 347904 sc-eQTL 2.31e-01 -0.207 0.172 0.922 PB L2
ENSG00000131238 PPT1 290410 sc-eQTL 7.36e-01 0.0638 0.189 0.922 PB L2
ENSG00000164002 EXO5 -120604 sc-eQTL 6.10e-01 -0.0969 0.189 0.922 PB L2
ENSG00000171793 CTPS1 -591551 sc-eQTL 1.71e-01 0.272 0.197 0.922 PB L2
ENSG00000179862 CITED4 -474226 sc-eQTL 6.57e-01 0.0782 0.176 0.922 PB L2
ENSG00000187815 ZFP69 -89153 sc-eQTL 4.49e-01 -0.141 0.185 0.922 PB L2
ENSG00000198754 OXCT2 616789 sc-eQTL 7.43e-02 -0.296 0.164 0.922 PB L2
ENSG00000259943 AL050341.2 130170 sc-eQTL 7.52e-01 -0.0621 0.196 0.922 PB L2
ENSG00000272145 NFYC-AS1 -303929 sc-eQTL 3.36e-01 -0.178 0.184 0.922 PB L2
ENSG00000010803 SCMH1 -854017 sc-eQTL 3.75e-01 0.161 0.181 0.95 Pro_T L2
ENSG00000043514 TRIT1 504626 sc-eQTL 3.10e-01 0.191 0.187 0.95 Pro_T L2
ENSG00000066136 NFYC -303511 sc-eQTL 9.36e-01 0.0141 0.174 0.95 Pro_T L2
ENSG00000084070 SMAP2 43287 sc-eQTL 3.84e-02 -0.308 0.148 0.95 Pro_T L2
ENSG00000084072 PPIE 695955 sc-eQTL 3.10e-01 -0.175 0.172 0.95 Pro_T L2
ENSG00000084073 ZMPSTE24 129901 sc-eQTL 2.21e-01 0.181 0.147 0.95 Pro_T L2
ENSG00000090621 PABPC4 811347 sc-eQTL 4.29e-01 -0.105 0.132 0.95 Pro_T L2
ENSG00000116985 BMP8B 599272 sc-eQTL 1.07e-01 0.176 0.109 0.95 Pro_T L2
ENSG00000117000 RLF 226750 sc-eQTL 5.05e-01 0.12 0.18 0.95 Pro_T L2
ENSG00000117010 ZNF684 -143436 sc-eQTL 4.52e-01 -0.135 0.179 0.95 Pro_T L2
ENSG00000131236 CAP1 347904 sc-eQTL 3.18e-01 0.144 0.144 0.95 Pro_T L2
ENSG00000131238 PPT1 290410 sc-eQTL 8.38e-01 0.0332 0.162 0.95 Pro_T L2
ENSG00000164002 EXO5 -120604 sc-eQTL 1.92e-01 0.25 0.191 0.95 Pro_T L2
ENSG00000168389 MFSD2A 433025 sc-eQTL 5.88e-01 0.0744 0.137 0.95 Pro_T L2
ENSG00000171793 CTPS1 -591551 sc-eQTL 5.66e-01 -0.0976 0.17 0.95 Pro_T L2
ENSG00000179862 CITED4 -474226 sc-eQTL 5.09e-01 -0.106 0.16 0.95 Pro_T L2
ENSG00000187801 ZFP69B -61965 sc-eQTL 7.85e-01 0.0433 0.159 0.95 Pro_T L2
ENSG00000187815 ZFP69 -89153 sc-eQTL 3.52e-01 -0.168 0.18 0.95 Pro_T L2
ENSG00000198754 OXCT2 616789 sc-eQTL 9.99e-01 -6.84e-05 0.0931 0.95 Pro_T L2
ENSG00000259943 AL050341.2 130170 sc-eQTL 1.15e-01 -0.288 0.182 0.95 Pro_T L2
ENSG00000272145 NFYC-AS1 -303929 sc-eQTL 2.54e-01 0.202 0.176 0.95 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 70851 eQTL 0.000537 0.151 0.0434 0.00646 0.00506 0.0643
ENSG00000164002 EXO5 -120604 eQTL 2.01e-07 0.215 0.0411 0.00105 0.0 0.0643
ENSG00000171790 SLFNL1 -635100 eQTL 0.0347 0.114 0.0538 0.0 0.0 0.0643
ENSG00000187801 ZFP69B -61970 eQTL 1.16e-06 0.255 0.052 0.0 0.0 0.0643
ENSG00000213172 AL031985.1 23371 eQTL 0.000486 0.186 0.0531 0.0 0.0 0.0643
ENSG00000238287 AL603839.3 -120524 eQTL 0.00221 -0.252 0.082 0.0 0.0 0.0643
ENSG00000259943 AL050341.2 130170 eQTL 0.00862 0.101 0.0383 0.0 0.0 0.0643
ENSG00000260920 AL031985.3 -76182 eQTL 0.000138 0.181 0.0474 0.0 0.0 0.0643

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 70851 1.1e-05 9.44e-06 9.7e-07 4.25e-06 1.75e-06 4.17e-06 9.71e-06 1.18e-06 6.16e-06 3.57e-06 8.91e-06 3.52e-06 1.13e-05 3.5e-06 1.18e-06 4.64e-06 3.53e-06 4.08e-06 1.81e-06 1.58e-06 2.8e-06 7.64e-06 5.54e-06 2.01e-06 1.11e-05 2.29e-06 3.61e-06 1.78e-06 7.04e-06 7.61e-06 4.12e-06 4.9e-07 5.21e-07 2.33e-06 2.69e-06 1.16e-06 1.07e-06 5.14e-07 9e-07 7.13e-07 4.94e-07 8.29e-06 1.04e-06 1.68e-07 8.28e-07 1.19e-06 1.04e-06 6.58e-07 4.83e-07
ENSG00000117010 \N -143436 4.82e-06 4.33e-06 4.65e-07 1.97e-06 4.86e-07 1.33e-06 2.41e-06 6.05e-07 2.7e-06 1.27e-06 3.14e-06 1.63e-06 5.44e-06 1.24e-06 9.11e-07 1.73e-06 1.45e-06 2.15e-06 1.37e-06 1.29e-06 1.19e-06 3.49e-06 3.06e-06 1.01e-06 4.64e-06 1.26e-06 1.48e-06 1.4e-06 3.55e-06 3e-06 2e-06 3.23e-07 4.19e-07 1.24e-06 1.92e-06 6.6e-07 7.89e-07 4.03e-07 7.31e-07 3.5e-07 3.05e-07 3.87e-06 6.51e-07 1.95e-07 3.41e-07 3.1e-07 6.75e-07 1.95e-07 2.04e-07
ENSG00000164002 EXO5 -120604 5.92e-06 5.09e-06 6.94e-07 2.73e-06 6.85e-07 1.56e-06 3.96e-06 8.27e-07 4.55e-06 1.92e-06 4.21e-06 2.63e-06 7.24e-06 2.13e-06 1.06e-06 2.35e-06 1.82e-06 2.87e-06 1.43e-06 1.1e-06 1.8e-06 4.49e-06 3.43e-06 1.8e-06 5.59e-06 1.19e-06 2.1e-06 1.81e-06 4.26e-06 4.07e-06 2.28e-06 4.53e-07 5.45e-07 1.68e-06 2.23e-06 9.92e-07 9.08e-07 4.47e-07 1.17e-06 3.46e-07 1.51e-07 5.14e-06 3.98e-07 1.87e-07 4.32e-07 3.64e-07 8.72e-07 2.38e-07 1.76e-07
ENSG00000168389 \N 433025 1.26e-06 4.93e-07 8.67e-08 4.26e-07 1.03e-07 2.42e-07 5.28e-07 7.12e-08 3.62e-07 2.01e-07 4.64e-07 2.22e-07 6.98e-07 1.17e-07 1.24e-07 1.46e-07 1.18e-07 3.02e-07 9.97e-08 8.39e-08 1.6e-07 2.99e-07 3.04e-07 9.63e-08 7.01e-07 1.9e-07 1.85e-07 1.54e-07 2.84e-07 3.8e-07 2.43e-07 7.59e-08 4.87e-08 1.21e-07 3.55e-07 4.6e-08 9.11e-08 6.56e-08 4.74e-08 6.92e-08 5.19e-08 4.42e-07 3.31e-08 1.1e-08 9.95e-08 1.3e-08 8.94e-08 1.13e-08 5.05e-08
ENSG00000187801 ZFP69B -61970 1.33e-05 9.78e-06 1.24e-06 4.85e-06 1.72e-06 4.9e-06 9.78e-06 1.26e-06 8.03e-06 4.43e-06 1.06e-05 4.5e-06 1.22e-05 4.05e-06 1.69e-06 5.68e-06 3.69e-06 6.03e-06 2.27e-06 1.99e-06 3.56e-06 8.33e-06 6.78e-06 2.27e-06 1.24e-05 2.58e-06 4.19e-06 2.13e-06 8.26e-06 7.86e-06 4.82e-06 5.83e-07 6.95e-07 2.74e-06 3.31e-06 1.16e-06 1.12e-06 8.19e-07 1.08e-06 8.21e-07 6.35e-07 1.02e-05 1.26e-06 1.49e-07 6.85e-07 1.05e-06 8.75e-07 7.1e-07 5.85e-07
ENSG00000213172 AL031985.1 23371 4.97e-05 1.81e-05 3.46e-06 9.47e-06 2.41e-06 1.28e-05 2.18e-05 2.2e-06 1.72e-05 7.53e-06 1.87e-05 7.07e-06 2.89e-05 5.92e-06 4.38e-06 9.61e-06 7.73e-06 1.59e-05 4.12e-06 3.14e-06 7.66e-06 1.84e-05 1.63e-05 4.74e-06 2.48e-05 5.09e-06 7.6e-06 5.43e-06 1.75e-05 1.52e-05 1.09e-05 9.65e-07 1.23e-06 3.99e-06 5.76e-06 2.83e-06 1.78e-06 1.95e-06 2.25e-06 1.65e-06 9.98e-07 2.05e-05 2.66e-06 1.66e-07 1.41e-06 1.67e-06 2.6e-06 7.15e-07 4.84e-07
ENSG00000260920 AL031985.3 -76182 1.04e-05 9.33e-06 7.43e-07 3.94e-06 1.63e-06 3.93e-06 9.22e-06 1.07e-06 5.53e-06 3.29e-06 8.87e-06 2.98e-06 1.06e-05 3.18e-06 1e-06 4.32e-06 3e-06 3.84e-06 1.63e-06 1.4e-06 2.74e-06 7.72e-06 5.07e-06 1.99e-06 1.01e-05 2.16e-06 3.1e-06 1.55e-06 6.89e-06 7.58e-06 3.94e-06 4.15e-07 5.29e-07 2.2e-06 2.47e-06 9.71e-07 1.06e-06 4.36e-07 8.1e-07 6.04e-07 4.63e-07 8.1e-06 8.57e-07 1.53e-07 7.17e-07 1.34e-06 1.08e-06 7.5e-07 4.23e-07