Genes within 1Mb (chr1:40351132:A:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -891022 sc-eQTL 6.60e-01 -0.0861 0.195 0.949 B_Activated L2
ENSG00000043514 TRIT1 467621 sc-eQTL 6.32e-01 0.0921 0.192 0.949 B_Activated L2
ENSG00000049089 COL9A2 33319 sc-eQTL 7.65e-01 0.0578 0.193 0.949 B_Activated L2
ENSG00000066136 NFYC -340516 sc-eQTL 7.37e-01 0.0727 0.216 0.949 B_Activated L2
ENSG00000084070 SMAP2 6282 sc-eQTL 5.51e-01 0.0651 0.109 0.949 B_Activated L2
ENSG00000084072 PPIE 658950 sc-eQTL 8.50e-01 0.0369 0.194 0.949 B_Activated L2
ENSG00000084073 ZMPSTE24 92896 sc-eQTL 7.78e-01 0.0584 0.207 0.949 B_Activated L2
ENSG00000090621 PABPC4 774342 sc-eQTL 2.82e-02 0.346 0.156 0.949 B_Activated L2
ENSG00000116985 BMP8B 562267 sc-eQTL 9.48e-01 -0.00732 0.113 0.949 B_Activated L2
ENSG00000117000 RLF 189745 sc-eQTL 2.92e-01 0.202 0.191 0.949 B_Activated L2
ENSG00000117010 ZNF684 -180441 sc-eQTL 6.51e-01 -0.0839 0.185 0.949 B_Activated L2
ENSG00000131236 CAP1 310899 sc-eQTL 7.56e-01 0.0551 0.177 0.949 B_Activated L2
ENSG00000131238 PPT1 253405 sc-eQTL 3.52e-01 0.203 0.218 0.949 B_Activated L2
ENSG00000164002 EXO5 -157609 sc-eQTL 3.84e-02 0.342 0.164 0.949 B_Activated L2
ENSG00000171793 CTPS1 -628556 sc-eQTL 3.04e-01 -0.201 0.195 0.949 B_Activated L2
ENSG00000179862 CITED4 -511231 sc-eQTL 7.80e-01 0.0449 0.16 0.949 B_Activated L2
ENSG00000187815 ZFP69 -126158 sc-eQTL 2.53e-01 -0.202 0.176 0.949 B_Activated L2
ENSG00000198754 OXCT2 579784 sc-eQTL 3.71e-01 0.157 0.175 0.949 B_Activated L2
ENSG00000259943 AL050341.2 93165 sc-eQTL 5.10e-01 0.111 0.168 0.949 B_Activated L2
ENSG00000272145 NFYC-AS1 -340934 sc-eQTL 8.76e-01 0.0283 0.182 0.949 B_Activated L2
ENSG00000010803 SCMH1 -891022 sc-eQTL 2.29e-01 0.281 0.232 0.926 PB L2
ENSG00000043514 TRIT1 467621 sc-eQTL 7.29e-01 0.0726 0.209 0.926 PB L2
ENSG00000049089 COL9A2 33319 sc-eQTL 8.88e-01 -0.026 0.185 0.926 PB L2
ENSG00000066136 NFYC -340516 sc-eQTL 2.10e-01 -0.251 0.199 0.926 PB L2
ENSG00000084070 SMAP2 6282 sc-eQTL 2.07e-02 -0.333 0.142 0.926 PB L2
ENSG00000084072 PPIE 658950 sc-eQTL 9.88e-01 0.00274 0.188 0.926 PB L2
ENSG00000084073 ZMPSTE24 92896 sc-eQTL 9.99e-01 -0.000181 0.171 0.926 PB L2
ENSG00000090621 PABPC4 774342 sc-eQTL 3.46e-01 -0.107 0.114 0.926 PB L2
ENSG00000116985 BMP8B 562267 sc-eQTL 7.68e-01 0.0389 0.131 0.926 PB L2
ENSG00000117000 RLF 189745 sc-eQTL 5.49e-01 -0.127 0.211 0.926 PB L2
ENSG00000117010 ZNF684 -180441 sc-eQTL 3.29e-01 0.172 0.175 0.926 PB L2
ENSG00000131236 CAP1 310899 sc-eQTL 3.22e-01 -0.175 0.176 0.926 PB L2
ENSG00000131238 PPT1 253405 sc-eQTL 8.32e-01 0.0412 0.193 0.926 PB L2
ENSG00000164002 EXO5 -157609 sc-eQTL 8.82e-01 -0.0287 0.194 0.926 PB L2
ENSG00000171793 CTPS1 -628556 sc-eQTL 3.11e-01 0.206 0.203 0.926 PB L2
ENSG00000179862 CITED4 -511231 sc-eQTL 3.10e-01 0.183 0.179 0.926 PB L2
ENSG00000187815 ZFP69 -126158 sc-eQTL 4.96e-01 -0.129 0.19 0.926 PB L2
ENSG00000198754 OXCT2 579784 sc-eQTL 1.19e-01 -0.265 0.168 0.926 PB L2
ENSG00000259943 AL050341.2 93165 sc-eQTL 8.67e-01 -0.0336 0.2 0.926 PB L2
ENSG00000272145 NFYC-AS1 -340934 sc-eQTL 5.28e-01 -0.12 0.189 0.926 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 33846 pQTL 0.0418 0.124 0.0608 0.0 0.0 0.065
ENSG00000049089 COL9A2 33846 eQTL 0.00207 0.137 0.0442 0.00311 0.00159 0.0633
ENSG00000084073 ZMPSTE24 92896 eQTL 0.0417 0.0451 0.0221 0.00143 0.0 0.0633
ENSG00000164002 EXO5 -157609 eQTL 4.77e-07 0.212 0.0419 0.0 0.0 0.0633
ENSG00000187801 ZFP69B -98975 eQTL 3.58e-05 0.221 0.0531 0.0 0.0 0.0633
ENSG00000213172 AL031985.1 -13634 eQTL 1.25e-05 0.236 0.0538 0.0 0.0 0.0633
ENSG00000238287 AL603839.3 -157529 eQTL 0.0243 -0.189 0.0836 0.0 0.0 0.0633
ENSG00000259943 AL050341.2 93165 eQTL 0.00855 0.103 0.039 0.0 0.0 0.0633
ENSG00000260920 AL031985.3 -113187 eQTL 0.000329 0.174 0.0482 0.0 0.0 0.0633


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 33846 3.86e-05 3.22e-05 4.54e-06 1.45e-05 4.14e-06 1.2e-05 3.49e-05 3.71e-06 2.57e-05 1.27e-05 2.99e-05 1.26e-05 3.88e-05 1.16e-05 6.24e-06 1.51e-05 1.35e-05 2.21e-05 6.61e-06 5.45e-06 1.16e-05 2.83e-05 2.39e-05 7.31e-06 3.68e-05 6.35e-06 1.17e-05 1.15e-05 2.54e-05 1.97e-05 1.6e-05 1.63e-06 2.29e-06 5.98e-06 9.6e-06 4.57e-06 2.42e-06 2.97e-06 3.81e-06 2.93e-06 1.48e-06 3.18e-05 2.86e-06 2.8e-07 2.03e-06 3.1e-06 3.64e-06 1.32e-06 1.33e-06
ENSG00000164002 EXO5 -157609 6.16e-06 7.69e-06 1.11e-06 4.35e-06 1.58e-06 2.36e-06 7.39e-06 1.09e-06 6.19e-06 3.02e-06 7.7e-06 3.31e-06 9.42e-06 2.66e-06 1.04e-06 3.78e-06 3e-06 3.95e-06 1.43e-06 1.15e-06 2.92e-06 7.11e-06 4.13e-06 1.48e-06 7.3e-06 1.72e-06 3.62e-06 1.69e-06 4.47e-06 4.34e-06 3.01e-06 9.78e-07 5.74e-07 2.18e-06 2.22e-06 1.18e-06 1.31e-06 1.95e-06 1.57e-06 5.64e-07 1.67e-07 5.65e-06 1.42e-06 2.2e-07 4.14e-07 1.28e-06 8.4e-07 7.21e-07 4.98e-07
ENSG00000187801 ZFP69B -98975 1.41e-05 1.39e-05 2.41e-06 8.87e-06 2.58e-06 5.72e-06 1.23e-05 2.04e-06 1.37e-05 6.03e-06 1.45e-05 5.33e-06 1.85e-05 4.46e-06 3.51e-06 6.93e-06 6.1e-06 9.07e-06 2.7e-06 2.82e-06 6.26e-06 1.2e-05 7.49e-06 3.35e-06 1.6e-05 3.8e-06 7.19e-06 5.34e-06 1.02e-05 7.97e-06 7.59e-06 1.24e-06 1.19e-06 3.49e-06 5.17e-06 2.15e-06 1.79e-06 2.09e-06 2.14e-06 1.18e-06 7.46e-07 1.28e-05 1.61e-06 2.22e-07 6.86e-07 1.96e-06 1.4e-06 7.51e-07 4.65e-07
ENSG00000213172 AL031985.1 -13634 3.81e-05 3.34e-05 6.31e-06 1.56e-05 5.98e-06 1.44e-05 4.47e-05 4.55e-06 3.16e-05 1.56e-05 3.78e-05 1.74e-05 4.74e-05 1.4e-05 7.05e-06 1.92e-05 1.77e-05 2.56e-05 7.86e-06 6.77e-06 1.54e-05 3.41e-05 3.2e-05 8.98e-06 4.44e-05 8.02e-06 1.44e-05 1.31e-05 3.19e-05 2.53e-05 2.03e-05 1.64e-06 2.61e-06 7.07e-06 1.17e-05 5.77e-06 3.13e-06 3.15e-06 4.75e-06 3.35e-06 1.77e-06 3.81e-05 3.58e-06 3.62e-07 2.49e-06 3.9e-06 4.05e-06 1.61e-06 1.52e-06
ENSG00000243970 \N 791461 2.77e-07 1.27e-07 9.16e-08 2.2e-07 9.24e-08 9.05e-08 1.67e-07 5.4e-08 1.44e-07 6.4e-08 1.63e-07 9e-08 1.53e-07 8.07e-08 5.72e-08 7.23e-08 4.18e-08 1.56e-07 7.09e-08 4.3e-08 1.23e-07 1.31e-07 1.44e-07 2.87e-08 1.46e-07 1.16e-07 1.23e-07 9.74e-08 1.08e-07 1.06e-07 9.92e-08 6.13e-08 3.59e-08 1.03e-07 3.81e-08 3.07e-08 6.24e-08 1.09e-07 6.29e-08 5.35e-08 4.19e-08 1.35e-07 3.55e-07 2.63e-08 3.83e-08 8.07e-09 1.21e-07 2.2e-09 4.8e-08
ENSG00000260920 AL031985.3 -113187 1.1e-05 1.21e-05 1.79e-06 7.65e-06 2.44e-06 4.8e-06 1.05e-05 1.69e-06 1.07e-05 5.38e-06 1.24e-05 4.49e-06 1.48e-05 3.66e-06 2.6e-06 6.27e-06 4.73e-06 7.08e-06 2.47e-06 2.68e-06 5.07e-06 1.04e-05 6.68e-06 2.85e-06 1.28e-05 2.85e-06 6.12e-06 4.62e-06 7.73e-06 7.74e-06 5.69e-06 1.17e-06 1.14e-06 2.92e-06 4.55e-06 2.08e-06 1.86e-06 2.02e-06 2.15e-06 9.75e-07 4.94e-07 9.84e-06 1.57e-06 2.1e-07 7.41e-07 1.75e-06 9.12e-07 7.2e-07 4.44e-07
ENSG00000272145 \N -340934 1.2e-06 9.83e-07 2.62e-07 1.3e-06 2.95e-07 5.92e-07 1.26e-06 3.34e-07 1.59e-06 4.36e-07 1.63e-06 5.76e-07 1.95e-06 2.89e-07 4.48e-07 8.12e-07 8.25e-07 6.1e-07 8.41e-07 6.68e-07 7.41e-07 1.56e-06 6.93e-07 6.06e-07 1.7e-06 2.4e-07 9.3e-07 6.46e-07 7e-07 1.34e-06 5.48e-07 4.71e-07 2.29e-07 5.84e-07 6.24e-07 4.4e-07 6.46e-07 4.72e-07 6.01e-07 2.91e-07 8.29e-08 9.59e-07 6.86e-07 1.68e-07 1.73e-07 3.19e-07 1.9e-07 4.91e-08 1.34e-07