Genes within 1Mb (chr1:40348474:C:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -893680 sc-eQTL 6.60e-01 0.0861 0.195 0.051 B_Activated L2
ENSG00000043514 TRIT1 464963 sc-eQTL 6.32e-01 -0.0921 0.192 0.051 B_Activated L2
ENSG00000049089 COL9A2 30661 sc-eQTL 7.65e-01 -0.0578 0.193 0.051 B_Activated L2
ENSG00000066136 NFYC -343174 sc-eQTL 7.37e-01 -0.0727 0.216 0.051 B_Activated L2
ENSG00000084070 SMAP2 3624 sc-eQTL 5.51e-01 -0.0651 0.109 0.051 B_Activated L2
ENSG00000084072 PPIE 656292 sc-eQTL 8.50e-01 -0.0369 0.194 0.051 B_Activated L2
ENSG00000084073 ZMPSTE24 90238 sc-eQTL 7.78e-01 -0.0584 0.207 0.051 B_Activated L2
ENSG00000090621 PABPC4 771684 sc-eQTL 2.82e-02 -0.346 0.156 0.051 B_Activated L2
ENSG00000116985 BMP8B 559609 sc-eQTL 9.48e-01 0.00732 0.113 0.051 B_Activated L2
ENSG00000117000 RLF 187087 sc-eQTL 2.92e-01 -0.202 0.191 0.051 B_Activated L2
ENSG00000117010 ZNF684 -183099 sc-eQTL 6.51e-01 0.0839 0.185 0.051 B_Activated L2
ENSG00000131236 CAP1 308241 sc-eQTL 7.56e-01 -0.0551 0.177 0.051 B_Activated L2
ENSG00000131238 PPT1 250747 sc-eQTL 3.52e-01 -0.203 0.218 0.051 B_Activated L2
ENSG00000164002 EXO5 -160267 sc-eQTL 3.84e-02 -0.342 0.164 0.051 B_Activated L2
ENSG00000171793 CTPS1 -631214 sc-eQTL 3.04e-01 0.201 0.195 0.051 B_Activated L2
ENSG00000179862 CITED4 -513889 sc-eQTL 7.80e-01 -0.0449 0.16 0.051 B_Activated L2
ENSG00000187815 ZFP69 -128816 sc-eQTL 2.53e-01 0.202 0.176 0.051 B_Activated L2
ENSG00000198754 OXCT2 577126 sc-eQTL 3.71e-01 -0.157 0.175 0.051 B_Activated L2
ENSG00000259943 AL050341.2 90507 sc-eQTL 5.10e-01 -0.111 0.168 0.051 B_Activated L2
ENSG00000272145 NFYC-AS1 -343592 sc-eQTL 8.76e-01 -0.0283 0.182 0.051 B_Activated L2
ENSG00000010803 SCMH1 -893680 sc-eQTL 2.29e-01 -0.281 0.232 0.074 PB L2
ENSG00000043514 TRIT1 464963 sc-eQTL 7.29e-01 -0.0726 0.209 0.074 PB L2
ENSG00000049089 COL9A2 30661 sc-eQTL 8.88e-01 0.026 0.185 0.074 PB L2
ENSG00000066136 NFYC -343174 sc-eQTL 2.10e-01 0.251 0.199 0.074 PB L2
ENSG00000084070 SMAP2 3624 sc-eQTL 2.07e-02 0.333 0.142 0.074 PB L2
ENSG00000084072 PPIE 656292 sc-eQTL 9.88e-01 -0.00274 0.188 0.074 PB L2
ENSG00000084073 ZMPSTE24 90238 sc-eQTL 9.99e-01 0.000181 0.171 0.074 PB L2
ENSG00000090621 PABPC4 771684 sc-eQTL 3.46e-01 0.107 0.114 0.074 PB L2
ENSG00000116985 BMP8B 559609 sc-eQTL 7.68e-01 -0.0389 0.131 0.074 PB L2
ENSG00000117000 RLF 187087 sc-eQTL 5.49e-01 0.127 0.211 0.074 PB L2
ENSG00000117010 ZNF684 -183099 sc-eQTL 3.29e-01 -0.172 0.175 0.074 PB L2
ENSG00000131236 CAP1 308241 sc-eQTL 3.22e-01 0.175 0.176 0.074 PB L2
ENSG00000131238 PPT1 250747 sc-eQTL 8.32e-01 -0.0412 0.193 0.074 PB L2
ENSG00000164002 EXO5 -160267 sc-eQTL 8.82e-01 0.0287 0.194 0.074 PB L2
ENSG00000171793 CTPS1 -631214 sc-eQTL 3.11e-01 -0.206 0.203 0.074 PB L2
ENSG00000179862 CITED4 -513889 sc-eQTL 3.10e-01 -0.183 0.179 0.074 PB L2
ENSG00000187815 ZFP69 -128816 sc-eQTL 4.96e-01 0.129 0.19 0.074 PB L2
ENSG00000198754 OXCT2 577126 sc-eQTL 1.19e-01 0.265 0.168 0.074 PB L2
ENSG00000259943 AL050341.2 90507 sc-eQTL 8.67e-01 0.0336 0.2 0.074 PB L2
ENSG00000272145 NFYC-AS1 -343592 sc-eQTL 5.28e-01 0.12 0.189 0.074 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 31188 pQTL 0.0466 -0.121 0.0606 0.0 0.0 0.065
ENSG00000049089 COL9A2 31188 eQTL 0.00195 -0.137 0.044 0.00324 0.00167 0.0633
ENSG00000084073 ZMPSTE24 90238 eQTL 0.0494 -0.0433 0.022 0.0013 0.0 0.0633
ENSG00000116985 BMP8B 559609 eQTL 4.51e-02 -0.113 0.0566 0.0 0.0 0.0633
ENSG00000164002 EXO5 -160267 eQTL 4.83e-07 -0.211 0.0417 0.0 0.0 0.0633
ENSG00000187801 ZFP69B -101633 eQTL 2.46e-05 -0.224 0.0528 0.0 0.0 0.0633
ENSG00000213172 AL031985.1 -16292 eQTL 8.66e-06 -0.239 0.0535 0.0 0.0 0.0633
ENSG00000238287 AL603839.3 -160187 eQTL 0.0231 0.189 0.0832 0.0 0.0 0.0633
ENSG00000259943 AL050341.2 90507 eQTL 0.00873 -0.102 0.0388 0.0 0.0 0.0633
ENSG00000260920 AL031985.3 -115845 eQTL 0.00035 -0.172 0.048 0.0 0.0 0.0633


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 31188 1.14e-05 1.28e-05 2.32e-06 7.63e-06 2.48e-06 5.45e-06 1.5e-05 2.2e-06 1.14e-05 6e-06 1.58e-05 6.46e-06 1.99e-05 4.27e-06 3.71e-06 6.92e-06 5.91e-06 9.66e-06 2.95e-06 3.12e-06 6.27e-06 1.09e-05 1.03e-05 3.47e-06 1.9e-05 4.4e-06 6.69e-06 4.75e-06 1.3e-05 1.03e-05 8.17e-06 1.07e-06 1.17e-06 3.37e-06 5.46e-06 2.77e-06 1.84e-06 2.02e-06 2.19e-06 9.85e-07 1e-06 1.54e-05 1.63e-06 1.64e-07 7.57e-07 1.71e-06 1.87e-06 6.92e-07 4.59e-07
ENSG00000164002 EXO5 -160267 4e-06 3.14e-06 3.33e-07 2e-06 4.43e-07 8.07e-07 2.26e-06 6.87e-07 1.88e-06 1.1e-06 2.57e-06 1.48e-06 3.5e-06 1.44e-06 9.21e-07 1.52e-06 1.09e-06 2.26e-06 8.1e-07 1.14e-06 8.63e-07 2.95e-06 2.23e-06 1.02e-06 3.97e-06 1.28e-06 1.44e-06 1.15e-06 2.17e-06 1.99e-06 2.01e-06 2.81e-07 3.74e-07 1.14e-06 1.56e-06 7.36e-07 7.44e-07 4.41e-07 6.98e-07 2.15e-07 2.87e-07 3.32e-06 5.37e-07 1.31e-07 3.39e-07 3.31e-07 7.57e-07 2.62e-07 2.1e-07
ENSG00000187801 ZFP69B -101633 4.89e-06 5.05e-06 8.1e-07 2.96e-06 9.66e-07 1.72e-06 4.87e-06 9.6e-07 4.96e-06 2.43e-06 5.26e-06 3.52e-06 7.26e-06 2.22e-06 1.43e-06 2.9e-06 2.06e-06 3.32e-06 1.28e-06 1.01e-06 2.16e-06 4.53e-06 3.6e-06 1.57e-06 6.41e-06 1.43e-06 2.49e-06 1.44e-06 4.21e-06 4.19e-06 2.83e-06 4.71e-07 7.09e-07 1.75e-06 2.13e-06 8.35e-07 9.22e-07 4.92e-07 1.32e-06 3.28e-07 2.08e-07 5.59e-06 3.82e-07 1.81e-07 4.33e-07 4.64e-07 9.33e-07 2.4e-07 3.41e-07
ENSG00000213172 AL031985.1 -16292 1.69e-05 2.2e-05 3.55e-06 1.2e-05 3.06e-06 8.57e-06 2.6e-05 3.33e-06 1.87e-05 9.85e-06 2.45e-05 9.37e-06 3.35e-05 8.04e-06 5.26e-06 1.05e-05 9.64e-06 1.58e-05 5.1e-06 4.51e-06 8.63e-06 1.91e-05 1.85e-05 5.67e-06 2.94e-05 5.44e-06 8.26e-06 7.85e-06 1.93e-05 1.67e-05 1.28e-05 1.27e-06 1.49e-06 4.4e-06 8.41e-06 4.2e-06 1.89e-06 2.71e-06 2.96e-06 2.3e-06 1.19e-06 2.44e-05 2.66e-06 2.5e-07 1.81e-06 2.79e-06 3.21e-06 1.2e-06 1.11e-06
ENSG00000243970 \N 788803 3.07e-07 1.33e-07 5.49e-08 2.07e-07 9.24e-08 8.33e-08 1.81e-07 5.43e-08 1.45e-07 6.08e-08 1.67e-07 1.11e-07 1.69e-07 8.13e-08 5.69e-08 7.49e-08 4.01e-08 1.44e-07 6.32e-08 4.78e-08 1.19e-07 1.26e-07 1.44e-07 2.79e-08 1.72e-07 1.14e-07 1.12e-07 9.74e-08 1.2e-07 9.88e-08 1.08e-07 3.26e-08 3.61e-08 8.11e-08 2.97e-08 3.53e-08 5.29e-08 9.23e-08 6.37e-08 3.71e-08 5.03e-08 1.4e-07 5.39e-08 1.32e-08 3.81e-08 1.8e-08 1.2e-07 1.88e-09 5.04e-08
ENSG00000260920 AL031985.3 -115845 4.48e-06 4.91e-06 6.94e-07 2.41e-06 7.94e-07 1.35e-06 3.88e-06 9.69e-07 3.56e-06 1.99e-06 4.46e-06 3.32e-06 6.55e-06 2.15e-06 1.42e-06 2.34e-06 1.8e-06 2.89e-06 1.43e-06 8.79e-07 1.69e-06 3.89e-06 3.45e-06 1.86e-06 5.16e-06 1.25e-06 2.45e-06 1.76e-06 4.21e-06 3.62e-06 2.23e-06 3.79e-07 6e-07 1.45e-06 2.03e-06 9.5e-07 9.08e-07 4.68e-07 1.28e-06 3.99e-07 1.96e-07 4.93e-06 3.78e-07 1.99e-07 3.64e-07 3.38e-07 7.44e-07 2.02e-07 2.56e-07
ENSG00000272145 \N -343592 1.28e-06 9.34e-07 2.15e-07 4.84e-07 9.6e-08 4.39e-07 1.07e-06 2.64e-07 9.42e-07 3.24e-07 1.32e-06 5.6e-07 1.46e-06 2.72e-07 4.4e-07 4.47e-07 6.83e-07 5.27e-07 3.95e-07 3.72e-07 2.41e-07 7.21e-07 5.81e-07 3.93e-07 1.86e-06 2.52e-07 6.13e-07 3.78e-07 8e-07 9.49e-07 5.1e-07 5.3e-08 4.83e-08 2.29e-07 4.15e-07 2.04e-07 1.97e-07 1.24e-07 8.43e-08 1.56e-08 1.35e-07 1.09e-06 7.53e-08 1.55e-08 1.8e-07 6.87e-08 1.82e-07 5.66e-08 5.55e-08