Genes within 1Mb (chr1:40331291:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -910863 sc-eQTL 2.02e-01 -0.329 0.256 0.056 PB L2
ENSG00000043514 TRIT1 447780 sc-eQTL 8.66e-01 0.0389 0.231 0.056 PB L2
ENSG00000049089 COL9A2 13478 sc-eQTL 2.98e-01 -0.212 0.203 0.056 PB L2
ENSG00000066136 NFYC -360357 sc-eQTL 1.55e-01 0.314 0.219 0.056 PB L2
ENSG00000084070 SMAP2 -13559 sc-eQTL 1.90e-02 0.373 0.157 0.056 PB L2
ENSG00000084072 PPIE 639109 sc-eQTL 6.64e-01 -0.0905 0.208 0.056 PB L2
ENSG00000084073 ZMPSTE24 73055 sc-eQTL 5.87e-01 0.103 0.188 0.056 PB L2
ENSG00000090621 PABPC4 754501 sc-eQTL 7.50e-01 -0.0402 0.126 0.056 PB L2
ENSG00000116985 BMP8B 542426 sc-eQTL 4.28e-01 -0.115 0.145 0.056 PB L2
ENSG00000117000 RLF 169904 sc-eQTL 3.45e-01 0.221 0.232 0.056 PB L2
ENSG00000117010 ZNF684 -200282 sc-eQTL 4.10e-01 -0.16 0.194 0.056 PB L2
ENSG00000131236 CAP1 291058 sc-eQTL 5.18e-01 0.127 0.195 0.056 PB L2
ENSG00000131238 PPT1 233564 sc-eQTL 8.60e-01 -0.0377 0.214 0.056 PB L2
ENSG00000164002 EXO5 -177450 sc-eQTL 1.67e-01 0.295 0.212 0.056 PB L2
ENSG00000171793 CTPS1 -648397 sc-eQTL 1.90e-01 -0.294 0.223 0.056 PB L2
ENSG00000179862 CITED4 -531072 sc-eQTL 8.96e-01 0.0259 0.199 0.056 PB L2
ENSG00000187815 ZFP69 -145999 sc-eQTL 1.99e-01 0.269 0.208 0.056 PB L2
ENSG00000198754 OXCT2 559943 sc-eQTL 9.36e-02 0.314 0.186 0.056 PB L2
ENSG00000259943 AL050341.2 73324 sc-eQTL 7.39e-01 -0.074 0.221 0.056 PB L2
ENSG00000272145 NFYC-AS1 -360775 sc-eQTL 8.07e-01 0.051 0.209 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116985 BMP8B 542426 eQTL 3.99e-02 -0.156 0.0757 0.0 0.0 0.0348
ENSG00000164002 EXO5 -177450 eQTL 1.60e-06 -0.27 0.0559 0.0 0.0 0.0348
ENSG00000171793 CTPS1 -648044 eQTL 0.0443 0.0994 0.0494 0.0 0.0 0.0348
ENSG00000187801 ZFP69B -118816 eQTL 0.0397 -0.147 0.0712 0.0 0.0 0.0348
ENSG00000213172 AL031985.1 -33475 eQTL 2.92e-10 -0.452 0.0709 0.0576 0.0552 0.0348
ENSG00000238287 AL603839.3 -177370 eQTL 0.0105 0.286 0.111 0.0 0.0 0.0348


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 \N 14005 2.17e-05 2.22e-05 4.31e-06 1.24e-05 3.53e-06 9.8e-06 3.09e-05 3.5e-06 2.05e-05 1.02e-05 2.71e-05 9.95e-06 3.65e-05 9.56e-06 5.45e-06 1.2e-05 1.1e-05 1.75e-05 6e-06 5.07e-06 9.59e-06 2.24e-05 2.17e-05 6.36e-06 3.26e-05 5.78e-06 8.84e-06 9e-06 2.47e-05 2.02e-05 1.35e-05 1.49e-06 1.91e-06 5.41e-06 8.83e-06 4.48e-06 2.36e-06 2.82e-06 3.56e-06 2.69e-06 1.59e-06 2.78e-05 2.72e-06 2.81e-07 1.97e-06 2.69e-06 3.43e-06 1.36e-06 1.11e-06
ENSG00000066136 \N -360398 9.36e-07 5.33e-07 1.03e-07 4.32e-07 1.05e-07 2.09e-07 5.31e-07 1.21e-07 4.26e-07 2.37e-07 6.56e-07 3.08e-07 7.71e-07 1.1e-07 1.57e-07 2.14e-07 2.53e-07 3.67e-07 1.93e-07 1.53e-07 1.97e-07 3.71e-07 3.69e-07 1.71e-07 7.72e-07 2.4e-07 2.58e-07 2.57e-07 3.86e-07 4.9e-07 2.83e-07 7.49e-08 5.6e-08 1.25e-07 3.04e-07 7.98e-08 1.1e-07 6.89e-08 6.29e-08 5.77e-08 4.63e-08 5.87e-07 3.55e-08 1.06e-08 1.25e-07 1.81e-08 8.84e-08 2.89e-09 4.97e-08
ENSG00000164002 EXO5 -177450 1.96e-06 1.48e-06 2.43e-07 1.27e-06 3.53e-07 6.56e-07 1.23e-06 4.18e-07 1.7e-06 7.11e-07 2e-06 9.12e-07 2.62e-06 3.39e-07 5.06e-07 9.7e-07 9.57e-07 1.12e-06 6.6e-07 4.63e-07 7.67e-07 1.98e-06 1.4e-06 6.31e-07 2.4e-06 7.73e-07 1.01e-06 8.66e-07 1.67e-06 1.29e-06 8.65e-07 2.09e-07 2.64e-07 6.06e-07 6.8e-07 4.8e-07 7.32e-07 2.47e-07 5.08e-07 3.12e-07 2.83e-07 2.12e-06 3.52e-07 1.31e-07 2.81e-07 1.99e-07 2.26e-07 5.45e-08 1.91e-07
ENSG00000187801 ZFP69B -118816 4.02e-06 3.15e-06 3.38e-07 1.89e-06 4.8e-07 7.9e-07 2.49e-06 7.35e-07 2.35e-06 1.22e-06 3e-06 1.39e-06 4.69e-06 1.43e-06 9.23e-07 1.68e-06 1.37e-06 2.25e-06 1.17e-06 1.44e-06 1.26e-06 3.17e-06 2.94e-06 1.2e-06 4.03e-06 1.03e-06 1.42e-06 1.8e-06 3.17e-06 2.55e-06 2e-06 2.5e-07 5.88e-07 1.25e-06 1.65e-06 9.46e-07 7.5e-07 4.24e-07 1.16e-06 2.76e-07 2.88e-07 4.1e-06 5.42e-07 1.89e-07 2.94e-07 3.36e-07 8.41e-07 2.42e-07 2.22e-07
ENSG00000213172 AL031985.1 -33475 1.12e-05 1.13e-05 1.85e-06 6.5e-06 2.38e-06 5.13e-06 1.28e-05 2.12e-06 1.06e-05 5.52e-06 1.39e-05 5.74e-06 1.81e-05 3.88e-06 3.18e-06 6.69e-06 5.17e-06 8e-06 2.83e-06 2.84e-06 5.84e-06 1.06e-05 9.94e-06 3.3e-06 1.78e-05 4.35e-06 5.93e-06 4.64e-06 1.3e-05 1.02e-05 6.75e-06 1.07e-06 1.29e-06 3.37e-06 4.83e-06 2.67e-06 1.82e-06 1.89e-06 2.15e-06 9.84e-07 1.04e-06 1.41e-05 1.6e-06 1.61e-07 8.47e-07 1.78e-06 1.79e-06 7.32e-07 4.65e-07
ENSG00000260920 \N -133028 3.55e-06 2.46e-06 2.31e-07 1.85e-06 4.61e-07 7.73e-07 2.03e-06 5.91e-07 1.89e-06 9.91e-07 2.46e-06 1.35e-06 3.49e-06 1.29e-06 5.48e-07 1.45e-06 9.79e-07 2.03e-06 7.31e-07 1.13e-06 9.06e-07 3.01e-06 2.38e-06 1.03e-06 3.57e-06 1.37e-06 1.28e-06 1.46e-06 2.18e-06 1.89e-06 1.73e-06 2.82e-07 4.19e-07 1.2e-06 1.27e-06 7.36e-07 8.3e-07 3.81e-07 9.25e-07 2.13e-07 3.58e-07 3.32e-06 6.18e-07 1.99e-07 3.83e-07 3.14e-07 4.87e-07 2.23e-07 2.79e-07
ENSG00000272145 \N -360775 9.36e-07 5.33e-07 1.03e-07 4.32e-07 1.05e-07 2.09e-07 5.28e-07 1.21e-07 4.26e-07 2.37e-07 6.56e-07 3.08e-07 7.71e-07 1.1e-07 1.57e-07 2.05e-07 2.53e-07 3.67e-07 1.93e-07 1.53e-07 1.97e-07 3.71e-07 3.69e-07 1.71e-07 7.72e-07 2.4e-07 2.58e-07 2.57e-07 3.86e-07 4.9e-07 2.83e-07 7.49e-08 5.6e-08 1.25e-07 3.04e-07 7.98e-08 1.1e-07 6.89e-08 6.29e-08 5.77e-08 4.63e-08 5.87e-07 3.55e-08 1.06e-08 1.25e-07 1.81e-08 8.84e-08 2.89e-09 4.97e-08