Genes within 1Mb (chr1:40317691:T:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -924463 sc-eQTL 1.79e-01 -0.358 0.264 0.052 PB L2
ENSG00000043514 TRIT1 434180 sc-eQTL 8.54e-01 0.0439 0.239 0.052 PB L2
ENSG00000049089 COL9A2 -122 sc-eQTL 2.38e-01 -0.248 0.209 0.052 PB L2
ENSG00000066136 NFYC -373957 sc-eQTL 1.28e-01 0.347 0.226 0.052 PB L2
ENSG00000084070 SMAP2 -27159 sc-eQTL 1.90e-02 0.385 0.162 0.052 PB L2
ENSG00000084072 PPIE 625509 sc-eQTL 5.25e-01 -0.137 0.214 0.052 PB L2
ENSG00000084073 ZMPSTE24 59455 sc-eQTL 7.34e-01 0.0663 0.195 0.052 PB L2
ENSG00000090621 PABPC4 740901 sc-eQTL 6.49e-01 -0.0593 0.13 0.052 PB L2
ENSG00000116985 BMP8B 528826 sc-eQTL 5.90e-01 -0.0809 0.15 0.052 PB L2
ENSG00000117000 RLF 156304 sc-eQTL 3.82e-01 0.211 0.24 0.052 PB L2
ENSG00000117010 ZNF684 -213882 sc-eQTL 4.02e-01 -0.168 0.2 0.052 PB L2
ENSG00000131236 CAP1 277458 sc-eQTL 6.51e-01 0.0913 0.202 0.052 PB L2
ENSG00000131238 PPT1 219964 sc-eQTL 9.88e-01 0.00343 0.221 0.052 PB L2
ENSG00000164002 EXO5 -191050 sc-eQTL 1.67e-01 0.305 0.219 0.052 PB L2
ENSG00000171793 CTPS1 -661997 sc-eQTL 1.67e-01 -0.32 0.23 0.052 PB L2
ENSG00000179862 CITED4 -544672 sc-eQTL 9.37e-01 -0.0162 0.205 0.052 PB L2
ENSG00000187815 ZFP69 -159599 sc-eQTL 1.92e-01 0.282 0.215 0.052 PB L2
ENSG00000198754 OXCT2 546343 sc-eQTL 9.17e-02 0.326 0.192 0.052 PB L2
ENSG00000259943 AL050341.2 59724 sc-eQTL 6.56e-01 -0.102 0.228 0.052 PB L2
ENSG00000272145 NFYC-AS1 -374375 sc-eQTL 8.67e-01 0.0361 0.215 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000084070 SMAP2 -27159 eQTL 0.029 -0.0608 0.0278 0.0 0.0 0.0324
ENSG00000084073 ZMPSTE24 59455 eQTL 0.0206 -0.07 0.0302 0.00154 0.0 0.0324
ENSG00000116985 BMP8B 528826 eQTL 3.57e-02 -0.163 0.0776 0.0 0.0 0.0324
ENSG00000117000 RLF 156304 eQTL 1.18e-02 0.0786 0.0312 0.0 0.0 0.0324
ENSG00000164002 EXO5 -191050 eQTL 3.05e-07 -0.295 0.0572 0.0 0.0 0.0324
ENSG00000171793 CTPS1 -661644 eQTL 0.0137 0.125 0.0506 0.0 0.0 0.0324
ENSG00000187801 ZFP69B -132416 eQTL 0.0188 -0.172 0.073 0.0 0.0 0.0324
ENSG00000213172 AL031985.1 -47075 eQTL 6.16e-10 -0.455 0.0728 0.0257 0.0258 0.0324
ENSG00000238287 AL603839.3 -190970 eQTL 0.00798 0.303 0.114 0.0 0.0 0.0324
ENSG00000284719 AL033527.5 518269 eQTL 0.0256 -0.24 0.107 0.0 0.0 0.0324


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 \N 405 0.000259 0.00024 2.98e-05 5.67e-05 2.37e-05 7.81e-05 0.000208 2.22e-05 0.000168 6.67e-05 0.000204 8.62e-05 0.000274 7.56e-05 3.23e-05 0.000126 8.32e-05 0.00012 3.81e-05 2.9e-05 7.49e-05 0.000197 0.000198 4.08e-05 0.000223 4.77e-05 8.62e-05 5.61e-05 0.000174 8.4e-05 0.000114 6.33e-06 1.04e-05 3e-05 3.36e-05 1.94e-05 7.72e-06 9.89e-06 1.65e-05 8.71e-06 3.45e-06 0.000256 2.41e-05 5.74e-07 1.4e-05 2.02e-05 1.91e-05 7.56e-06 6.41e-06
ENSG00000164002 EXO5 -191050 7.7e-06 1.26e-05 5.33e-06 7.82e-06 2.45e-06 4.1e-06 9.59e-06 1.77e-06 9.7e-06 4.42e-06 1.06e-05 6.53e-06 1.85e-05 3.61e-06 3.5e-06 5.93e-06 8.79e-06 7.6e-06 2.7e-06 2.63e-06 5.16e-06 8.39e-06 8.67e-06 2.15e-06 1.55e-05 4.65e-06 3.6e-06 4.45e-06 8.97e-06 8.81e-06 4.3e-06 5.23e-07 6.76e-07 3.69e-06 5.77e-06 2.87e-06 1.78e-06 2.3e-06 1.6e-06 1.11e-06 6.6e-07 1.19e-05 2.52e-06 1.96e-07 6.07e-07 1.82e-06 9.78e-07 8.19e-07 5.73e-07
ENSG00000187801 ZFP69B -132416 1.04e-05 1.71e-05 4.37e-06 1.22e-05 2.36e-06 5.6e-06 1.64e-05 2.37e-06 1.37e-05 5.41e-06 1.64e-05 8.28e-06 2.99e-05 5.15e-06 4.76e-06 6.98e-06 1.05e-05 1.13e-05 3.32e-06 3.15e-06 6.51e-06 1.15e-05 1.39e-05 3.43e-06 2.48e-05 5.34e-06 5.85e-06 5.34e-06 1.45e-05 1.42e-05 7.72e-06 1.06e-06 1.09e-06 4.09e-06 7.59e-06 3.74e-06 1.79e-06 2.69e-06 2.03e-06 2.66e-06 9.4e-07 1.85e-05 2.64e-06 2.71e-07 6.8e-07 2.35e-06 1.91e-06 8.32e-07 4.52e-07
ENSG00000213172 AL031985.1 -47075 2.51e-05 3.1e-05 4.87e-06 1.53e-05 4.53e-06 1.12e-05 3.25e-05 3.74e-06 2.5e-05 1.05e-05 3.08e-05 1.55e-05 4.34e-05 1.22e-05 5.71e-06 1.25e-05 1.38e-05 2.1e-05 6.56e-06 5.62e-06 9.78e-06 2.42e-05 2.61e-05 6.62e-06 3.79e-05 6.05e-06 9.89e-06 8.99e-06 2.57e-05 2.17e-05 1.66e-05 1.66e-06 1.87e-06 5.74e-06 1.08e-05 4.48e-06 2.4e-06 2.98e-06 3.56e-06 3.28e-06 1.66e-06 3.4e-05 2.98e-06 3.57e-07 1.99e-06 2.97e-06 3.63e-06 1.24e-06 1.28e-06
ENSG00000260920 \N -146628 9.7e-06 1.54e-05 4.54e-06 1.12e-05 2.42e-06 5.16e-06 1.32e-05 2.2e-06 1.2e-05 5.51e-06 1.43e-05 7.68e-06 2.69e-05 4.49e-06 4.41e-06 6.58e-06 1.02e-05 1e-05 3.09e-06 2.84e-06 6.79e-06 1.06e-05 1.27e-05 3.32e-06 2.31e-05 5.29e-06 4.73e-06 5.13e-06 1.31e-05 1.24e-05 6.69e-06 9.42e-07 1.25e-06 4.07e-06 7.03e-06 3.35e-06 1.74e-06 2.61e-06 2.15e-06 2.3e-06 1e-06 1.67e-05 2.66e-06 2.52e-07 6.74e-07 2.36e-06 1.82e-06 7.24e-07 4.55e-07
ENSG00000272145 \N -374375 4.49e-06 8.04e-06 3.03e-06 3.5e-06 1.64e-06 1.57e-06 3.83e-06 9.12e-07 4.9e-06 1.83e-06 4.21e-06 2.82e-06 1.06e-05 2.85e-06 9.49e-07 3.13e-06 4.57e-06 3.71e-06 1.43e-06 1.15e-06 2.89e-06 4.81e-06 4.49e-06 1.72e-06 8.19e-06 2.4e-06 1.77e-06 1.74e-06 4.31e-06 4.98e-06 2.05e-06 2.35e-07 8.14e-07 2.93e-06 2.3e-06 1.38e-06 1.89e-06 1.68e-06 9.07e-07 5e-07 3.05e-07 5.32e-06 1.45e-06 1.55e-07 3.48e-07 1.14e-06 8e-07 5.36e-07 2.62e-07
ENSG00000284719 AL033527.5 518269 3.54e-06 5e-06 1.56e-06 2.6e-06 6.67e-07 7.56e-07 2.33e-06 6.11e-07 3.58e-06 8.55e-07 2.55e-06 2.87e-06 7.51e-06 2.31e-06 1.3e-06 1.68e-06 2.92e-06 2.13e-06 1.32e-06 1.17e-06 1.97e-06 3.68e-06 3.32e-06 9.81e-07 4.89e-06 1.58e-06 1.2e-06 1.41e-06 2.68e-06 3.75e-06 1.29e-06 2.08e-07 4.3e-07 2.2e-06 2.08e-06 9.97e-07 1.56e-06 4.72e-07 1.33e-06 3.28e-07 3.03e-07 3.31e-06 9.01e-07 1.89e-07 1.65e-07 3.72e-07 3.69e-07 2.2e-07 7.91e-08