Genes within 1Mb (chr1:40311019:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -931135 sc-eQTL 2.08e-01 -0.318 0.251 0.059 PB L2
ENSG00000043514 TRIT1 427508 sc-eQTL 7.41e-01 0.0749 0.226 0.059 PB L2
ENSG00000049089 COL9A2 -6794 sc-eQTL 2.35e-01 -0.237 0.199 0.059 PB L2
ENSG00000066136 NFYC -380629 sc-eQTL 1.42e-01 0.318 0.215 0.059 PB L2
ENSG00000084070 SMAP2 -33831 sc-eQTL 9.26e-02 0.264 0.155 0.059 PB L2
ENSG00000084072 PPIE 618837 sc-eQTL 3.92e-01 -0.174 0.203 0.059 PB L2
ENSG00000084073 ZMPSTE24 52783 sc-eQTL 9.13e-01 -0.0202 0.185 0.059 PB L2
ENSG00000090621 PABPC4 734229 sc-eQTL 6.69e-01 -0.0528 0.123 0.059 PB L2
ENSG00000116985 BMP8B 522154 sc-eQTL 3.98e-01 -0.12 0.142 0.059 PB L2
ENSG00000117000 RLF 149632 sc-eQTL 2.39e-01 0.269 0.227 0.059 PB L2
ENSG00000117010 ZNF684 -220554 sc-eQTL 5.04e-01 -0.127 0.19 0.059 PB L2
ENSG00000131236 CAP1 270786 sc-eQTL 5.93e-01 0.103 0.191 0.059 PB L2
ENSG00000131238 PPT1 213292 sc-eQTL 7.48e-01 0.0675 0.209 0.059 PB L2
ENSG00000164002 EXO5 -197722 sc-eQTL 1.26e-01 0.319 0.207 0.059 PB L2
ENSG00000171793 CTPS1 -668669 sc-eQTL 1.61e-01 -0.308 0.218 0.059 PB L2
ENSG00000179862 CITED4 -551344 sc-eQTL 6.57e-01 0.0866 0.195 0.059 PB L2
ENSG00000187815 ZFP69 -166271 sc-eQTL 1.71e-01 0.281 0.204 0.059 PB L2
ENSG00000198754 OXCT2 539671 sc-eQTL 9.45e-02 0.307 0.182 0.059 PB L2
ENSG00000259943 AL050341.2 53052 sc-eQTL 6.42e-01 -0.101 0.217 0.059 PB L2
ENSG00000272145 NFYC-AS1 -381047 sc-eQTL 9.45e-01 -0.0142 0.205 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 -6267 eQTL 0.0422 -0.116 0.057 0.0 0.0 0.0378
ENSG00000116985 BMP8B 522154 eQTL 1.56e-02 -0.177 0.073 0.0 0.0 0.0378
ENSG00000116990 MYCL 408763 eQTL 6.27e-02 0.0783 0.042 0.00123 0.0 0.0378
ENSG00000117000 RLF 149632 eQTL 1.64e-03 0.0924 0.0292 0.0 0.0 0.0378
ENSG00000164002 EXO5 -197722 eQTL 5.82e-06 -0.246 0.0539 0.00105 0.0 0.0378
ENSG00000171793 CTPS1 -668316 eQTL 0.0292 0.104 0.0476 0.0 0.0 0.0378
ENSG00000187801 ZFP69B -139088 eQTL 0.00988 -0.177 0.0686 0.0 0.0 0.0378
ENSG00000213172 AL031985.1 -53747 eQTL 6.32e-09 -0.402 0.0686 0.00298 0.00278 0.0378


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 -6267 2.66e-05 2.76e-05 5.7e-06 1.5e-05 5.29e-06 1.29e-05 3.97e-05 4.18e-06 2.53e-05 1.27e-05 3.16e-05 1.48e-05 4.29e-05 1.26e-05 6.5e-06 1.53e-05 1.51e-05 2.23e-05 7.51e-06 7.31e-06 1.38e-05 2.79e-05 2.67e-05 9.68e-06 3.84e-05 6.84e-06 1.14e-05 1.08e-05 2.76e-05 3.14e-05 1.66e-05 1.65e-06 2.78e-06 7.41e-06 1.12e-05 5.98e-06 3.32e-06 3.26e-06 5e-06 3.6e-06 1.75e-06 3.29e-05 3.43e-06 3.78e-07 2.3e-06 3.66e-06 3.96e-06 1.5e-06 1.49e-06
ENSG00000164002 EXO5 -197722 1.32e-06 1.01e-06 3.03e-07 1.01e-06 2.71e-07 4.59e-07 1.33e-06 3.5e-07 1.41e-06 3.99e-07 1.56e-06 6.03e-07 2.13e-06 3.07e-07 4.35e-07 7.19e-07 8.13e-07 6.1e-07 7.52e-07 6.88e-07 4.44e-07 1.24e-06 9.22e-07 5.86e-07 2.11e-06 3.59e-07 7.27e-07 7.59e-07 1.18e-06 1.24e-06 6.76e-07 7.28e-08 2.14e-07 4.91e-07 5.2e-07 4.69e-07 5.17e-07 1.4e-07 2.9e-07 1.17e-07 1.99e-07 1.58e-06 9.42e-08 1.06e-07 1.67e-07 7.29e-08 1.7e-07 5.66e-08 1.07e-07
ENSG00000171793 CTPS1 -668316 2.67e-07 1.19e-07 3.72e-08 1.84e-07 9.01e-08 9.87e-08 1.42e-07 5.19e-08 1.41e-07 4.57e-08 1.6e-07 8.14e-08 1.41e-07 6.56e-08 6e-08 7.17e-08 3.94e-08 1.21e-07 5.39e-08 4.45e-08 1.04e-07 1.23e-07 1.34e-07 3.68e-08 1.32e-07 1.14e-07 1.11e-07 9.57e-08 1.05e-07 1.1e-07 9.64e-08 3.87e-08 3.3e-08 8.65e-08 8.82e-08 3.94e-08 4.95e-08 9.68e-08 7.2e-08 4.02e-08 4.35e-08 1.36e-07 4.89e-08 1.12e-08 3.84e-08 1.68e-08 1.23e-07 4.04e-09 4.9e-08
ENSG00000187801 ZFP69B -139088 2.02e-06 2.44e-06 2.51e-07 1.51e-06 4.74e-07 6.44e-07 1.32e-06 4.39e-07 1.77e-06 6.94e-07 1.84e-06 1.32e-06 3.31e-06 9.92e-07 3.28e-07 1.02e-06 1.1e-06 1.36e-06 5.56e-07 8.94e-07 6.48e-07 1.96e-06 1.56e-06 8.33e-07 2.59e-06 9.36e-07 1.04e-06 1.04e-06 1.74e-06 1.63e-06 1.06e-06 2.81e-07 3.98e-07 6.34e-07 8.59e-07 6.72e-07 6.99e-07 3.44e-07 4.96e-07 2.26e-07 2.69e-07 3e-06 4.02e-07 1.99e-07 3.56e-07 2.03e-07 2.26e-07 3.73e-08 2.89e-07
ENSG00000213172 AL031985.1 -53747 6.95e-06 8.73e-06 7.05e-07 3.94e-06 1.74e-06 2.16e-06 8.88e-06 1.28e-06 5.67e-06 3.43e-06 8.97e-06 3.69e-06 1.13e-05 3.61e-06 1.06e-06 4.32e-06 3.63e-06 3.81e-06 2.11e-06 2.44e-06 2.93e-06 7.44e-06 5.31e-06 1.95e-06 9.65e-06 2.27e-06 3.39e-06 2.11e-06 6.21e-06 7.87e-06 3.95e-06 4.74e-07 8.1e-07 2.34e-06 2.59e-06 1.68e-06 1.12e-06 8.34e-07 1.29e-06 7.31e-07 6.7e-07 8.83e-06 9.1e-07 1.61e-07 7.45e-07 1.07e-06 1.16e-06 6.29e-07 5.96e-07
ENSG00000243970 \N 751348 2.61e-07 1.11e-07 3.59e-08 1.82e-07 8.83e-08 9.57e-08 1.38e-07 5.33e-08 1.41e-07 4.4e-08 1.56e-07 7.75e-08 1.33e-07 6.21e-08 5.53e-08 7.5e-08 3.88e-08 1.14e-07 5.21e-08 4.21e-08 1.04e-07 1.27e-07 1.26e-07 4.16e-08 1.33e-07 1.19e-07 1.12e-07 9.32e-08 1.03e-07 1.12e-07 9.73e-08 3.92e-08 3.26e-08 8.68e-08 9.07e-08 3.76e-08 5.01e-08 9.49e-08 7.58e-08 3.55e-08 4.83e-08 1.35e-07 4.19e-08 1.23e-08 4.92e-08 1.7e-08 1.25e-07 4.14e-09 4.81e-08
ENSG00000272145 \N -381047 3.92e-07 2.56e-07 6.57e-08 2.53e-07 1.07e-07 8.85e-08 3.11e-07 6.75e-08 2.04e-07 1.15e-07 2.68e-07 1.57e-07 3.95e-07 8.26e-08 6.93e-08 1.01e-07 7.3e-08 2.56e-07 9.19e-08 8.31e-08 1.34e-07 2.06e-07 2e-07 4.34e-08 3.14e-07 1.65e-07 1.29e-07 1.54e-07 1.47e-07 1.85e-07 1.71e-07 5.24e-08 4.97e-08 1.02e-07 6.78e-08 5.04e-08 6.67e-08 7.51e-08 5.8e-08 8.34e-08 5.36e-08 3.06e-07 3.31e-08 2.02e-08 8.24e-08 8.31e-09 7.61e-08 1.98e-09 4.66e-08