Genes within 1Mb (chr1:40299629:T:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -942525 sc-eQTL 2.71e-01 -0.256 0.231 0.063 PB L2
ENSG00000043514 TRIT1 416118 sc-eQTL 7.73e-01 0.0601 0.208 0.063 PB L2
ENSG00000049089 COL9A2 -18184 sc-eQTL 3.11e-01 -0.186 0.183 0.063 PB L2
ENSG00000066136 NFYC -392019 sc-eQTL 2.26e-01 0.241 0.198 0.063 PB L2
ENSG00000084070 SMAP2 -45221 sc-eQTL 1.11e-01 0.23 0.143 0.063 PB L2
ENSG00000084072 PPIE 607447 sc-eQTL 4.14e-01 -0.153 0.187 0.063 PB L2
ENSG00000084073 ZMPSTE24 41393 sc-eQTL 8.52e-01 -0.0318 0.17 0.063 PB L2
ENSG00000090621 PABPC4 722839 sc-eQTL 8.60e-01 -0.02 0.113 0.063 PB L2
ENSG00000116985 BMP8B 510764 sc-eQTL 3.76e-01 -0.116 0.13 0.063 PB L2
ENSG00000117000 RLF 138242 sc-eQTL 2.66e-01 0.234 0.209 0.063 PB L2
ENSG00000117010 ZNF684 -231944 sc-eQTL 5.45e-01 -0.106 0.175 0.063 PB L2
ENSG00000131236 CAP1 259396 sc-eQTL 5.60e-01 0.103 0.176 0.063 PB L2
ENSG00000131238 PPT1 201902 sc-eQTL 8.11e-01 0.0462 0.193 0.063 PB L2
ENSG00000164002 EXO5 -209112 sc-eQTL 1.03e-01 0.313 0.191 0.063 PB L2
ENSG00000171793 CTPS1 -680059 sc-eQTL 1.48e-01 -0.293 0.201 0.063 PB L2
ENSG00000179862 CITED4 -562734 sc-eQTL 6.57e-01 0.0797 0.179 0.063 PB L2
ENSG00000187815 ZFP69 -177661 sc-eQTL 2.38e-01 0.223 0.188 0.063 PB L2
ENSG00000198754 OXCT2 528281 sc-eQTL 9.97e-02 0.278 0.167 0.063 PB L2
ENSG00000259943 AL050341.2 41662 sc-eQTL 7.65e-01 -0.0597 0.199 0.063 PB L2
ENSG00000272145 NFYC-AS1 -392437 sc-eQTL 8.82e-01 -0.0281 0.188 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 -17657 eQTL 0.04 -0.115 0.056 0.0 0.0 0.0397
ENSG00000116985 BMP8B 510764 eQTL 1.82e-02 -0.17 0.0717 0.0 0.0 0.0397
ENSG00000117000 RLF 138242 eQTL 3.46e-04 0.103 0.0287 0.0 0.0 0.0397
ENSG00000164002 EXO5 -209112 eQTL 1.08e-05 -0.235 0.0531 0.0 0.0 0.0397
ENSG00000187801 ZFP69B -150478 eQTL 0.00386 -0.195 0.0674 0.0 0.0 0.0397
ENSG00000213172 AL031985.1 -65137 eQTL 4.37e-09 -0.4 0.0674 0.00488 0.00395 0.0397


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 -17657 2.78e-05 3.01e-05 5.25e-06 1.62e-05 4.7e-06 1.32e-05 4.15e-05 4.18e-06 3.05e-05 1.45e-05 3.3e-05 1.78e-05 4.34e-05 1.54e-05 6.25e-06 2.5e-05 1.34e-05 2.41e-05 6.56e-06 5.81e-06 1.19e-05 2.88e-05 2.94e-05 8.66e-06 4.72e-05 6.74e-06 1.3e-05 1.26e-05 2.89e-05 1.91e-05 1.61e-05 1.63e-06 2.5e-06 6.04e-06 1.19e-05 5.99e-06 3.1e-06 2.98e-06 4.65e-06 3.92e-06 1.72e-06 3.89e-05 3.64e-06 2.73e-07 2.3e-06 3.47e-06 4.08e-06 1.6e-06 1.5e-06
ENSG00000164002 EXO5 -209112 4.64e-06 4.05e-06 7.59e-07 3.17e-06 1.36e-06 9.66e-07 3.48e-06 6.83e-07 2.35e-06 1.94e-06 4.08e-06 1.86e-06 7.09e-06 2.34e-06 9.73e-07 3.98e-06 1.58e-06 2.9e-06 1.49e-06 9.46e-07 2.29e-06 4.26e-06 4.55e-06 1.4e-06 5.89e-06 1.23e-06 1.79e-06 1.77e-06 3.78e-06 2.93e-06 1.98e-06 4.34e-07 6.13e-07 1.9e-06 2.24e-06 9.06e-07 9.08e-07 4.21e-07 9.49e-07 3.71e-07 1.96e-07 5.76e-06 8.46e-07 1.99e-07 5.92e-07 1.77e-06 8.27e-07 2.3e-07 3.03e-07
ENSG00000187801 ZFP69B -150478 7.62e-06 6.3e-06 1.92e-06 4.36e-06 1.82e-06 1.53e-06 9.45e-06 1.05e-06 4.95e-06 3.31e-06 7.76e-06 3.03e-06 1.12e-05 3.42e-06 2.34e-06 6.48e-06 1.93e-06 3.77e-06 2.7e-06 1.99e-06 3.19e-06 7.38e-06 6.78e-06 2.85e-06 1.15e-05 2.15e-06 3.05e-06 2.27e-06 5.97e-06 5.18e-06 2.62e-06 7.64e-07 5.74e-07 2.27e-06 2.92e-06 1.46e-06 1.04e-06 4.08e-07 1.41e-06 8.61e-07 6.13e-07 9.16e-06 1.57e-06 1.81e-07 7.98e-07 2.34e-06 1.12e-06 4.28e-07 5.44e-07
ENSG00000213172 AL031985.1 -65137 1.4e-05 1.48e-05 3.83e-06 1.06e-05 2.75e-06 5.96e-06 2.26e-05 2.25e-06 1.39e-05 6.93e-06 1.79e-05 7.63e-06 2.44e-05 7.48e-06 4.91e-06 1.11e-05 6.42e-06 1.22e-05 4.2e-06 3.57e-06 6.87e-06 1.4e-05 1.71e-05 5.15e-06 3.01e-05 4.53e-06 7.72e-06 5.65e-06 1.5e-05 1.14e-05 8.13e-06 1.2e-06 1.23e-06 3.8e-06 7.35e-06 3.8e-06 1.75e-06 2.04e-06 2.7e-06 2.03e-06 1.07e-06 2.33e-05 2.65e-06 2.1e-07 1.97e-06 2.71e-06 2.08e-06 8.24e-07 6.24e-07
ENSG00000272145 \N -392437 1.28e-06 9.31e-07 2.5e-07 1.23e-06 4.18e-07 4.76e-07 1.49e-06 1.65e-07 1.14e-06 4.15e-07 1.41e-06 5.93e-07 2.61e-06 2.59e-07 4.92e-07 9.72e-07 8.43e-07 6.85e-07 5.9e-07 6.49e-07 5.47e-07 1.7e-06 1.14e-06 6.31e-07 2.26e-06 3.02e-07 6.21e-07 9.31e-07 1.18e-06 1.22e-06 5.77e-07 2.62e-07 1.49e-07 5.84e-07 5.31e-07 4.5e-07 4.68e-07 1.39e-07 5.13e-07 2.28e-07 3.17e-07 1.63e-06 4.34e-07 5.96e-09 1.93e-07 3.7e-07 1.21e-07 8.74e-08 8.21e-08