Genes within 1Mb (chr1:40298804:A:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -943350 sc-eQTL 2.26e-01 -0.293 0.241 0.067 PB L2
ENSG00000043514 TRIT1 415293 sc-eQTL 7.48e-01 0.0699 0.217 0.067 PB L2
ENSG00000049089 COL9A2 -19009 sc-eQTL 2.13e-01 -0.239 0.19 0.067 PB L2
ENSG00000066136 NFYC -392844 sc-eQTL 1.23e-01 0.32 0.206 0.067 PB L2
ENSG00000084070 SMAP2 -46046 sc-eQTL 1.53e-01 0.215 0.15 0.067 PB L2
ENSG00000084072 PPIE 606622 sc-eQTL 3.09e-01 -0.199 0.194 0.067 PB L2
ENSG00000084073 ZMPSTE24 40568 sc-eQTL 9.37e-01 -0.0141 0.177 0.067 PB L2
ENSG00000090621 PABPC4 722014 sc-eQTL 9.17e-01 0.0123 0.118 0.067 PB L2
ENSG00000116985 BMP8B 509939 sc-eQTL 3.52e-01 -0.127 0.136 0.067 PB L2
ENSG00000117000 RLF 137417 sc-eQTL 3.30e-01 0.214 0.219 0.067 PB L2
ENSG00000117010 ZNF684 -232769 sc-eQTL 5.41e-01 -0.112 0.182 0.067 PB L2
ENSG00000131236 CAP1 258571 sc-eQTL 8.35e-01 0.0383 0.184 0.067 PB L2
ENSG00000131238 PPT1 201077 sc-eQTL 9.28e-01 0.0182 0.201 0.067 PB L2
ENSG00000164002 EXO5 -209937 sc-eQTL 9.08e-02 0.339 0.199 0.067 PB L2
ENSG00000171793 CTPS1 -680884 sc-eQTL 1.78e-01 -0.284 0.21 0.067 PB L2
ENSG00000179862 CITED4 -563559 sc-eQTL 7.97e-01 0.0481 0.187 0.067 PB L2
ENSG00000187815 ZFP69 -178486 sc-eQTL 1.34e-01 0.295 0.195 0.067 PB L2
ENSG00000198754 OXCT2 527456 sc-eQTL 8.33e-02 0.305 0.174 0.067 PB L2
ENSG00000259943 AL050341.2 40837 sc-eQTL 9.42e-01 -0.0151 0.208 0.067 PB L2
ENSG00000272145 NFYC-AS1 -393262 sc-eQTL 7.32e-01 -0.0674 0.196 0.067 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116990 MYCL 396548 eQTL 7.97e-02 0.0694 0.0396 0.00106 0.0 0.0437
ENSG00000117000 RLF 137417 eQTL 1.50e-05 0.119 0.0274 0.0 0.0 0.0437
ENSG00000131238 PPT1 201077 eQTL 6.34e-03 0.19 0.0693 0.0 0.0 0.0437
ENSG00000164002 EXO5 -209937 eQTL 1.77e-05 -0.219 0.0509 0.0 0.0 0.0437
ENSG00000187801 ZFP69B -151303 eQTL 0.00197 -0.2 0.0645 0.0 0.0 0.0437
ENSG00000213172 AL031985.1 -65962 eQTL 2.42e-05 -0.277 0.0652 0.0 0.0 0.0437
ENSG00000238287 AL603839.3 -209857 eQTL 0.0367 0.212 0.101 0.0 0.0 0.0437
ENSG00000259943 AL050341.2 40837 eQTL 0.0397 -0.0972 0.0472 0.0 0.0 0.0437


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 \N -18482 1.77e-05 2.63e-05 4.47e-06 1.31e-05 3.23e-06 1e-05 3.09e-05 3.72e-06 2.22e-05 1.17e-05 2.91e-05 1.05e-05 3.83e-05 8.91e-06 5.35e-06 1.18e-05 1.06e-05 1.78e-05 6.26e-06 5.26e-06 9.62e-06 2.26e-05 2.24e-05 6.81e-06 3.29e-05 5.34e-06 9.29e-06 8.99e-06 2.47e-05 2.02e-05 1.51e-05 1.56e-06 1.71e-06 5.28e-06 9.03e-06 4.56e-06 1.85e-06 2.81e-06 3.24e-06 2.69e-06 1.28e-06 2.75e-05 2.54e-06 2.85e-07 1.86e-06 2.85e-06 3.42e-06 1.34e-06 1.56e-06
ENSG00000116990 MYCL 396548 2.76e-07 2.17e-07 6.28e-08 2.31e-07 9.8e-08 8.33e-08 2.16e-07 5.66e-08 1.54e-07 5.67e-08 1.76e-07 1.15e-07 1.95e-07 8.44e-08 5.97e-08 7.98e-08 4.45e-08 1.56e-07 7.11e-08 5.48e-08 1.26e-07 1.76e-07 1.62e-07 3.07e-08 2.48e-07 1.25e-07 1.12e-07 1.47e-07 1.34e-07 1.38e-07 1.26e-07 2.93e-08 3.65e-08 9.76e-08 3.12e-08 2.68e-08 6.57e-08 8.37e-08 6.49e-08 3.92e-08 5.33e-08 2e-07 3.02e-08 2.1e-08 5.87e-08 1.71e-08 1e-07 1.88e-09 5.04e-08
ENSG00000117000 RLF 137417 2.74e-06 4.67e-06 6.91e-07 1.95e-06 5.12e-07 8.69e-07 2.5e-06 8.45e-07 2.79e-06 1.29e-06 3.25e-06 2e-06 4.84e-06 1.33e-06 9.86e-07 2.01e-06 2.07e-06 2.11e-06 1.41e-06 8.79e-07 1.9e-06 3.92e-06 2.58e-06 1.6e-06 4.86e-06 1.19e-06 1.58e-06 1.57e-06 3.78e-06 3.38e-06 1.99e-06 4.72e-07 8.13e-07 1.33e-06 1.74e-06 9.19e-07 1e-06 4.24e-07 1.31e-06 3.96e-07 1.96e-07 4.1e-06 3.78e-07 1.65e-07 3.17e-07 3.67e-07 7.92e-07 2.47e-07 1.75e-07
ENSG00000131238 PPT1 201077 1.25e-06 1.84e-06 2.79e-07 1.32e-06 2.95e-07 6.02e-07 1.5e-06 3.65e-07 1.44e-06 4.32e-07 1.85e-06 7.82e-07 2.31e-06 3.43e-07 4.98e-07 9.07e-07 1.07e-06 7.72e-07 5.62e-07 4.83e-07 7.61e-07 1.89e-06 8.31e-07 5.64e-07 2.34e-06 4.17e-07 9.34e-07 9.33e-07 1.55e-06 1.29e-06 7.69e-07 1.92e-07 3.23e-07 6.95e-07 5.49e-07 4.82e-07 7.24e-07 3.43e-07 4.75e-07 9.07e-08 2.93e-07 1.8e-06 3.68e-07 1.87e-07 1.94e-07 1.23e-07 2.66e-07 7.74e-08 1.09e-07
ENSG00000164002 EXO5 -209937 1.27e-06 1.36e-06 2.17e-07 1.17e-06 2.53e-07 5.88e-07 1.61e-06 3.46e-07 1.46e-06 3.82e-07 1.79e-06 6.55e-07 2.02e-06 2.77e-07 5.69e-07 8.19e-07 9.81e-07 6.8e-07 5.78e-07 6.26e-07 7.8e-07 1.81e-06 9.26e-07 6.44e-07 2.47e-06 3.87e-07 7.73e-07 8.66e-07 1.31e-06 1.16e-06 6.68e-07 1.56e-07 2.86e-07 6.99e-07 5.87e-07 4.62e-07 7.33e-07 3.07e-07 4.2e-07 4.15e-08 2.8e-07 1.65e-06 3.48e-07 1.81e-07 1.47e-07 1.12e-07 2.39e-07 7.81e-08 8.28e-08
ENSG00000187801 ZFP69B -151303 1.96e-06 3.82e-06 7.65e-07 1.97e-06 4.37e-07 8.08e-07 2.08e-06 6.09e-07 2.06e-06 8.44e-07 2.46e-06 1.4e-06 3.31e-06 1.43e-06 8.88e-07 1.77e-06 1.8e-06 2.26e-06 1.42e-06 1.39e-06 1.4e-06 3.41e-06 2.14e-06 1.01e-06 4.32e-06 1.33e-06 1.28e-06 1.69e-06 2.66e-06 2.55e-06 1.81e-06 3.26e-07 6.07e-07 1.26e-06 1.45e-06 9.75e-07 9.59e-07 4.74e-07 1.21e-06 1.86e-07 2.29e-07 3.38e-06 5.41e-07 1.46e-07 2.83e-07 3.21e-07 8.3e-07 2.4e-07 1.98e-07
ENSG00000213172 AL031985.1 -65962 7.78e-06 1.25e-05 2.31e-06 6.69e-06 2.22e-06 4.37e-06 1.09e-05 2.18e-06 1.05e-05 5.49e-06 1.28e-05 5.76e-06 1.62e-05 3.69e-06 2.89e-06 6.45e-06 5.31e-06 7.91e-06 3.02e-06 2.84e-06 5.35e-06 1.04e-05 7.98e-06 3.27e-06 1.66e-05 3.52e-06 5.24e-06 4.84e-06 1.13e-05 9.15e-06 6.63e-06 1.08e-06 1.25e-06 2.92e-06 5.03e-06 2.63e-06 1.71e-06 1.95e-06 2.18e-06 1.02e-06 8.59e-07 1.28e-05 1.28e-06 2.07e-07 7.65e-07 1.77e-06 1.79e-06 7.13e-07 4.42e-07
ENSG00000272145 \N -393262 2.76e-07 2.3e-07 6.41e-08 2.27e-07 1.03e-07 8.33e-08 2.24e-07 5.66e-08 1.59e-07 5.67e-08 1.76e-07 1.19e-07 2.05e-07 8.44e-08 6.12e-08 7.98e-08 4.35e-08 1.56e-07 7.53e-08 5.87e-08 1.24e-07 1.81e-07 1.62e-07 3.4e-08 2.48e-07 1.25e-07 1.12e-07 1.44e-07 1.31e-07 1.39e-07 1.26e-07 2.96e-08 3.74e-08 9.78e-08 3.71e-08 2.74e-08 6.77e-08 8.51e-08 6.35e-08 3.92e-08 5.42e-08 2.15e-07 3.08e-08 1.72e-08 5.59e-08 1.71e-08 9.96e-08 1.88e-09 5.02e-08