Genes within 1Mb (chr1:40291221:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -950933 sc-eQTL 2.74e-01 -0.267 0.243 0.067 PB L2
ENSG00000043514 TRIT1 407710 sc-eQTL 6.09e-01 -0.112 0.219 0.067 PB L2
ENSG00000049089 COL9A2 -26592 sc-eQTL 8.59e-01 -0.0343 0.193 0.067 PB L2
ENSG00000066136 NFYC -400427 sc-eQTL 1.00e-01 0.344 0.207 0.067 PB L2
ENSG00000084070 SMAP2 -53629 sc-eQTL 3.44e-01 0.144 0.152 0.067 PB L2
ENSG00000084072 PPIE 599039 sc-eQTL 3.69e-01 -0.177 0.196 0.067 PB L2
ENSG00000084073 ZMPSTE24 32985 sc-eQTL 3.09e-01 -0.182 0.178 0.067 PB L2
ENSG00000090621 PABPC4 714431 sc-eQTL 4.71e-01 0.0862 0.119 0.067 PB L2
ENSG00000116985 BMP8B 502356 sc-eQTL 7.10e-01 -0.0512 0.137 0.067 PB L2
ENSG00000117000 RLF 129834 sc-eQTL 4.06e-01 0.184 0.221 0.067 PB L2
ENSG00000117010 ZNF684 -240352 sc-eQTL 7.05e-01 0.0699 0.184 0.067 PB L2
ENSG00000131236 CAP1 250988 sc-eQTL 4.26e-01 0.148 0.185 0.067 PB L2
ENSG00000131238 PPT1 193494 sc-eQTL 4.85e-01 0.142 0.202 0.067 PB L2
ENSG00000164002 EXO5 -217520 sc-eQTL 2.15e-01 0.251 0.201 0.067 PB L2
ENSG00000171793 CTPS1 -688467 sc-eQTL 2.88e-02 -0.462 0.208 0.067 PB L2
ENSG00000179862 CITED4 -571142 sc-eQTL 9.63e-01 -0.00875 0.188 0.067 PB L2
ENSG00000187815 ZFP69 -186069 sc-eQTL 1.41e-01 0.292 0.197 0.067 PB L2
ENSG00000198754 OXCT2 519873 sc-eQTL 5.31e-02 0.342 0.175 0.067 PB L2
ENSG00000259943 AL050341.2 33254 sc-eQTL 8.07e-01 -0.0513 0.21 0.067 PB L2
ENSG00000272145 NFYC-AS1 -400845 sc-eQTL 6.18e-01 -0.0988 0.198 0.067 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 407710 eQTL 0.0598 -0.0904 0.048 0.00132 0.0 0.0432
ENSG00000066136 NFYC -400468 eQTL 0.0209 -0.0521 0.0225 0.00152 0.0 0.0432
ENSG00000116983 HPCAL4 599736 eQTL 0.0449 -0.0737 0.0367 0.0 0.0 0.0432
ENSG00000117000 RLF 129834 eQTL 4.22e-14 0.214 0.0279 0.00189 0.00233 0.0432
ENSG00000117013 KCNQ4 -492566 eQTL 4.99e-02 -0.172 0.0875 0.0 0.0 0.0432
ENSG00000131238 PPT1 193494 eQTL 1.38e-23 0.705 0.0685 0.0 0.0 0.0432
ENSG00000164002 EXO5 -217520 eQTL 1.90e-03 -0.165 0.053 0.0 0.0 0.0432
ENSG00000187801 ZFP69B -158886 eQTL 0.0475 -0.133 0.0672 0.0 0.0 0.0432
ENSG00000259943 AL050341.2 33254 eQTL 4.14e-09 -0.286 0.0482 0.0 0.0163 0.0432


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N 32985 1.8e-05 2.73e-05 3.73e-06 1.29e-05 3.1e-06 8.49e-06 2.73e-05 3.36e-06 2.31e-05 9.54e-06 2.86e-05 1.11e-05 3.78e-05 1.02e-05 5.19e-06 1.06e-05 1.05e-05 1.75e-05 5.87e-06 4.8e-06 8.59e-06 2e-05 2.24e-05 5.39e-06 3.43e-05 5.44e-06 8.18e-06 7.8e-06 2.12e-05 1.7e-05 1.51e-05 1.34e-06 1.67e-06 4.8e-06 8.41e-06 3.97e-06 1.86e-06 2.61e-06 3.24e-06 2.03e-06 1.46e-06 3.1e-05 2.48e-06 3.24e-07 1.29e-06 2.79e-06 2.85e-06 8.55e-07 6.24e-07
ENSG00000117000 RLF 129834 7.82e-06 1.27e-05 1.36e-06 6.11e-06 1.88e-06 4.1e-06 1.04e-05 1.68e-06 9.93e-06 4.31e-06 1.24e-05 5.26e-06 1.62e-05 3.66e-06 1.83e-06 5.5e-06 4.1e-06 6.22e-06 2.55e-06 2.44e-06 3.56e-06 8.11e-06 7.55e-06 2.14e-06 1.58e-05 2.4e-06 4.19e-06 2.43e-06 8.8e-06 7.9e-06 6.13e-06 5.62e-07 8.21e-07 2.58e-06 3.53e-06 1.53e-06 1.1e-06 8.34e-07 1.36e-06 7.19e-07 6.35e-07 1.36e-05 9.28e-07 1.9e-07 7.74e-07 8.35e-07 9.85e-07 7.06e-07 3.29e-07
ENSG00000117016 \N -374461 1.25e-06 1.49e-06 2.56e-07 1.25e-06 1.54e-07 4.81e-07 1.6e-06 2.74e-07 1.48e-06 3.82e-07 1.88e-06 5.86e-07 2.34e-06 2.7e-07 4.26e-07 5.02e-07 9.15e-07 5.36e-07 7.73e-07 2.37e-07 3.91e-07 1.28e-06 8.26e-07 5.36e-07 2.25e-06 3.28e-07 6.23e-07 4.71e-07 1.05e-06 1.34e-06 6.73e-07 7.91e-08 1.21e-07 3.91e-07 6.02e-07 2.15e-07 3.62e-07 1.51e-07 1.46e-07 8.51e-09 7.16e-08 1.62e-06 6.21e-08 1.9e-07 1.73e-07 7.7e-08 1.08e-07 5.66e-08 5.94e-08
ENSG00000131238 PPT1 193494 4.7e-06 8.94e-06 6.42e-07 3.5e-06 1.27e-06 1.62e-06 6.46e-06 1.01e-06 4.77e-06 2.41e-06 7.6e-06 3.24e-06 9.94e-06 1.79e-06 1.43e-06 2.99e-06 2.72e-06 3.85e-06 1.55e-06 9.7e-07 2.85e-06 4.96e-06 4.48e-06 1.6e-06 9.2e-06 1.54e-06 2.6e-06 1.67e-06 4.46e-06 4.6e-06 3.25e-06 4.91e-07 7.33e-07 1.82e-06 2.09e-06 9.23e-07 9.22e-07 4.76e-07 1.04e-06 3.63e-07 1.96e-07 8.5e-06 3.65e-07 2.03e-07 4.13e-07 3.94e-07 8.74e-07 2.47e-07 1.54e-07
ENSG00000187801 ZFP69B -158886 5.85e-06 9.91e-06 9.65e-07 4.49e-06 1.75e-06 2.32e-06 9.53e-06 1.22e-06 7.72e-06 3.3e-06 1.04e-05 4.23e-06 1.21e-05 3.81e-06 9.41e-07 3.91e-06 3.72e-06 3.79e-06 2.1e-06 1.44e-06 2.82e-06 7.56e-06 5.99e-06 1.84e-06 1.25e-05 2.15e-06 2.79e-06 1.78e-06 6.77e-06 7.09e-06 4.53e-06 4.17e-07 5.4e-07 1.74e-06 2.36e-06 1.14e-06 9.78e-07 4.7e-07 9.67e-07 5.21e-07 4.03e-07 1.14e-05 6.4e-07 1.95e-07 4.86e-07 1.2e-06 9.47e-07 4.25e-07 3.34e-07
ENSG00000259943 AL050341.2 33254 1.8e-05 2.73e-05 3.73e-06 1.29e-05 3.15e-06 8.49e-06 2.7e-05 3.36e-06 2.31e-05 9.54e-06 2.86e-05 1.11e-05 3.78e-05 1e-05 5.15e-06 1.05e-05 1.05e-05 1.75e-05 5.87e-06 4.78e-06 8.57e-06 2e-05 2.22e-05 5.39e-06 3.39e-05 5.5e-06 8.05e-06 7.75e-06 2.1e-05 1.7e-05 1.51e-05 1.33e-06 1.67e-06 4.8e-06 8.41e-06 3.93e-06 1.81e-06 2.6e-06 3.24e-06 2e-06 1.44e-06 3.1e-05 2.48e-06 3.24e-07 1.29e-06 2.77e-06 2.85e-06 8.57e-07 6.26e-07