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Genes within 1Mb (chr1:40281899:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -960255 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 398388 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -35914 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -409749 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -62951 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 589717 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 23663 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 705109 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 590414 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 120512 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -249674 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 241666 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 184172 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -226842 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -697789 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -580464 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -168203 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -195391 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 23932 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -410167 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -960255 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 398388 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -409749 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -62951 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 589717 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 23663 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 705109 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 493034 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 120512 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -249674 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 241666 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 184172 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -226842 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -697789 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -580464 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -195391 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 23932 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -410167 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -960255 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 398388 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -35914 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -409749 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -62951 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 589717 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 23663 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 705109 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 493034 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 120512 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -249674 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 241666 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 184172 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -226842 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -697789 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -580464 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -195391 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 510551 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 23932 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -410167 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -960255 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 398388 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -409749 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -62951 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 589717 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 23663 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 705109 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 493034 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 120512 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -249674 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 241666 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 184172 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -226842 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 326787 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -697789 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -580464 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -168203 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -195391 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 510551 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 23932 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -410167 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116983 HPCAL4 590414 eQTL 0.0281 -0.0754 0.0343 0.0 0.0 0.0486
ENSG00000117000 RLF 120512 eQTL 8.67e-15 0.205 0.026 0.00917 0.00909 0.0486
ENSG00000117013 KCNQ4 -501888 eQTL 1.89e-02 -0.192 0.0817 0.0 0.0 0.0486
ENSG00000131238 PPT1 184172 eQTL 4.21e-27 0.707 0.0635 0.0 0.0 0.0486
ENSG00000164002 EXO5 -226842 eQTL 4.20e-03 -0.142 0.0496 0.0 0.0 0.0486
ENSG00000187801 ZFP69B -168208 eQTL 0.0349 -0.133 0.0628 0.0 0.0 0.0486
ENSG00000238287 AL603839.3 -226762 eQTL 0.0489 0.194 0.0983 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 23932 eQTL 7.16e-09 -0.264 0.0451 0.0 0.0229 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N 23663 3.44e-05 3.22e-05 6.31e-06 1.55e-05 5.81e-06 1.45e-05 4.44e-05 4.65e-06 3.16e-05 1.57e-05 3.84e-05 1.77e-05 4.74e-05 1.36e-05 6.95e-06 1.9e-05 1.7e-05 2.52e-05 7.83e-06 6.66e-06 1.54e-05 3.34e-05 3.15e-05 9.09e-06 4.38e-05 8.02e-06 1.42e-05 1.29e-05 3.15e-05 2.5e-05 2.07e-05 1.64e-06 2.6e-06 7.07e-06 1.17e-05 5.85e-06 3.17e-06 3.11e-06 4.62e-06 3.36e-06 1.75e-06 3.71e-05 3.63e-06 3.62e-07 2.55e-06 3.86e-06 4.08e-06 1.61e-06 1.54e-06
ENSG00000117000 RLF 120512 9.14e-06 1.26e-05 1.99e-06 8.45e-06 2.38e-06 5.91e-06 1.37e-05 2.39e-06 1.39e-05 6.52e-06 1.6e-05 6.09e-06 2.18e-05 4.06e-06 2.94e-06 6.73e-06 5.87e-06 9.67e-06 2.98e-06 3.2e-06 6.79e-06 1.15e-05 9.78e-06 3.58e-06 1.8e-05 4.62e-06 6.68e-06 5.65e-06 1.25e-05 9.23e-06 8.68e-06 1.12e-06 1.2e-06 3.55e-06 6.33e-06 2.87e-06 1.82e-06 2.13e-06 2.04e-06 1.89e-06 9.45e-07 1.4e-05 1.63e-06 1.9e-07 8.18e-07 1.74e-06 1.82e-06 7.41e-07 6.34e-07
ENSG00000117016 \N -383783 1.6e-06 2.62e-06 3.28e-07 2.56e-06 4.13e-07 7.58e-07 1.44e-06 4.01e-07 1.95e-06 9.02e-07 2.35e-06 1.45e-06 3.61e-06 1.4e-06 7.39e-07 1.1e-06 1.04e-06 1.55e-06 6.96e-07 1.37e-06 1.12e-06 2.17e-06 1.78e-06 1.04e-06 3.53e-06 1.1e-06 1.16e-06 1.85e-06 1.77e-06 1.66e-06 1.86e-06 5.93e-07 5.85e-07 1.32e-06 2.04e-06 8.93e-07 8.38e-07 4.52e-07 1.23e-06 4.08e-07 3.75e-07 3.35e-06 3.77e-07 1.51e-07 3.49e-07 3.61e-07 4.15e-07 5.67e-07 2.02e-07
ENSG00000131238 PPT1 184172 5.61e-06 9.31e-06 1.37e-06 6.16e-06 1.66e-06 4.14e-06 9.73e-06 1.52e-06 7.93e-06 4.73e-06 1.04e-05 3.41e-06 1.29e-05 3.86e-06 1.37e-06 4.59e-06 3.79e-06 3.99e-06 2.19e-06 2.74e-06 4.57e-06 7.66e-06 5.5e-06 2.6e-06 1.1e-05 2.32e-06 3.73e-06 3.6e-06 7.09e-06 6.97e-06 4.84e-06 9.92e-07 9.16e-07 2.83e-06 4.77e-06 2.28e-06 1.56e-06 1.91e-06 1.59e-06 9.42e-07 1.02e-06 8.83e-06 1.29e-06 1.58e-07 7.74e-07 1.32e-06 9.51e-07 6.7e-07 4.15e-07
ENSG00000187801 ZFP69B -168208 6.55e-06 9.55e-06 1.31e-06 6.7e-06 1.82e-06 4.24e-06 9.61e-06 1.79e-06 9.65e-06 4.99e-06 1.13e-05 4.49e-06 1.45e-05 3.83e-06 1.69e-06 5.6e-06 3.85e-06 5.56e-06 2.58e-06 2.94e-06 4.8e-06 8e-06 6.46e-06 3.03e-06 1.26e-05 2.75e-06 4.38e-06 4.18e-06 8.01e-06 7.87e-06 5.51e-06 1.06e-06 1.14e-06 3.03e-06 5.03e-06 2.7e-06 1.73e-06 1.96e-06 1.76e-06 1.15e-06 1e-06 1.02e-05 1.43e-06 1.61e-07 6.81e-07 1.62e-06 9.55e-07 7.39e-07 4.81e-07
ENSG00000259943 AL050341.2 23932 3.44e-05 3.18e-05 6.31e-06 1.55e-05 5.81e-06 1.45e-05 4.44e-05 4.65e-06 3.16e-05 1.57e-05 3.84e-05 1.77e-05 4.74e-05 1.36e-05 6.84e-06 1.9e-05 1.7e-05 2.52e-05 7.83e-06 6.66e-06 1.52e-05 3.34e-05 3.11e-05 8.98e-06 4.38e-05 8.02e-06 1.42e-05 1.29e-05 3.14e-05 2.47e-05 2.07e-05 1.64e-06 2.6e-06 7.05e-06 1.17e-05 5.85e-06 3.13e-06 3.11e-06 4.58e-06 3.36e-06 1.75e-06 3.71e-05 3.63e-06 3.62e-07 2.49e-06 3.86e-06 4.08e-06 1.61e-06 1.54e-06
ENSG00000261798 \N 492923 1.32e-06 1.08e-06 2.29e-07 2.03e-06 2.43e-07 6.4e-07 1.48e-06 3.5e-07 1.78e-06 5.93e-07 2.04e-06 7.82e-07 2.58e-06 5.23e-07 4.55e-07 9.19e-07 8.94e-07 7.78e-07 7.7e-07 4.92e-07 7.6e-07 1.74e-06 9.11e-07 5.66e-07 2.35e-06 5.15e-07 9.09e-07 8.7e-07 1.48e-06 1.25e-06 8.35e-07 2.6e-07 3.21e-07 8.37e-07 1.27e-06 6.72e-07 6.72e-07 3.82e-07 6.79e-07 3.98e-07 1.67e-07 1.61e-06 5.13e-07 1.6e-07 3.26e-07 3.17e-07 2.22e-07 2.4e-07 1.86e-07