logo

Genes within 1Mb (chr1:40279087:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -963067 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 395576 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -38726 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -412561 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -65763 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 586905 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 20851 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 702297 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 587602 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 117700 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -252486 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 238854 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 181360 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -229654 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -700601 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -583276 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -171015 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -198203 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 21120 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -412979 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -963067 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 395576 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -412561 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -65763 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 586905 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 20851 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 702297 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 490222 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 117700 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -252486 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 238854 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 181360 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -229654 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -700601 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -583276 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -198203 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 21120 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -412979 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -963067 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 395576 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -38726 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -412561 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -65763 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 586905 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 20851 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 702297 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 490222 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 117700 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -252486 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 238854 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 181360 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -229654 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -700601 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -583276 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -198203 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 507739 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 21120 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -412979 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -963067 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 395576 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -412561 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -65763 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 586905 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 20851 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 702297 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 490222 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 117700 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -252486 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 238854 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 181360 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -229654 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 323975 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -700601 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -583276 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -171015 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -198203 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 507739 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 21120 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -412979 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -412602 eQTL 0.0489 -0.0413 0.0209 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 587602 eQTL 0.0256 -0.0761 0.0341 0.0 0.0 0.0491
ENSG00000117000 RLF 117700 eQTL 8.48e-15 0.204 0.0259 0.0095 0.00925 0.0491
ENSG00000117013 KCNQ4 -504700 eQTL 1.65e-02 -0.195 0.0812 0.0 0.0 0.0491
ENSG00000131238 PPT1 181360 eQTL 2.96e-27 0.704 0.0631 0.0 0.0 0.0491
ENSG00000164002 EXO5 -229654 eQTL 5.20e-03 -0.138 0.0493 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -171020 eQTL 0.0353 -0.132 0.0624 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 21120 eQTL 7.63e-09 -0.261 0.0449 0.0 0.0181 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N 20851 3.04e-05 3.01e-05 5.99e-06 1.54e-05 5.8e-06 1.37e-05 4.26e-05 4.96e-06 2.95e-05 1.54e-05 3.69e-05 1.65e-05 4.6e-05 1.33e-05 6.98e-06 1.77e-05 1.61e-05 2.44e-05 7.51e-06 6.93e-06 1.45e-05 3.13e-05 2.96e-05 8.8e-06 4.15e-05 7.92e-06 1.32e-05 1.26e-05 3.11e-05 2.45e-05 1.87e-05 1.64e-06 2.61e-06 7.07e-06 1.14e-05 5.52e-06 3.16e-06 3.11e-06 4.84e-06 3.36e-06 1.67e-06 3.54e-05 3.49e-06 3.84e-07 2.59e-06 4.04e-06 4.08e-06 1.6e-06 1.51e-06
ENSG00000117000 RLF 117700 5.22e-06 7.52e-06 7.06e-07 3.81e-06 1.65e-06 1.59e-06 8.54e-06 1.18e-06 4.79e-06 3.29e-06 7.47e-06 2.98e-06 9.42e-06 2.33e-06 9.95e-07 4.41e-06 3.78e-06 3.78e-06 1.63e-06 1.98e-06 2.93e-06 7.11e-06 4.66e-06 1.91e-06 8.97e-06 2.13e-06 2.72e-06 2.36e-06 6.08e-06 6.39e-06 3.18e-06 8.07e-07 8.05e-07 2.16e-06 1.99e-06 1.07e-06 1.07e-06 5.24e-07 1.2e-06 8.19e-07 7.54e-07 7.35e-06 8.15e-07 1.59e-07 7.63e-07 8.06e-07 9.9e-07 6.92e-07 6.22e-07
ENSG00000117016 \N -386595 7.3e-07 6.26e-07 1.31e-07 3.99e-07 1.07e-07 1.85e-07 5.76e-07 1.38e-07 3.82e-07 2.62e-07 6.88e-07 3.61e-07 7.02e-07 1.48e-07 2.26e-07 2.1e-07 4.73e-07 4.11e-07 3.36e-07 1.86e-07 2.49e-07 4.31e-07 3.7e-07 2.19e-07 7.72e-07 2.34e-07 2.43e-07 3.13e-07 3.86e-07 6.42e-07 2.83e-07 3.85e-08 4.49e-08 1.5e-07 2.82e-07 1.21e-07 1.86e-07 1.1e-07 7.5e-08 4.2e-08 8.35e-08 5.44e-07 4.53e-08 1.28e-08 1.93e-07 1.44e-08 1.32e-07 2.41e-08 5.63e-08
ENSG00000131238 PPT1 181360 2.62e-06 3.64e-06 5.62e-07 1.94e-06 6.12e-07 7.74e-07 2.48e-06 8.51e-07 2.34e-06 1.42e-06 2.77e-06 1.67e-06 3.69e-06 1.36e-06 8.99e-07 1.98e-06 1.75e-06 2.16e-06 1.48e-06 1.2e-06 1.69e-06 3.51e-06 2.77e-06 1.54e-06 4.14e-06 1.02e-06 1.38e-06 1.5e-06 2.76e-06 2.56e-06 2.08e-06 5.26e-07 5.8e-07 1.25e-06 1.45e-06 9.87e-07 8.57e-07 3.97e-07 1.25e-06 3.62e-07 1.51e-07 3.37e-06 5.42e-07 1.6e-07 4.13e-07 3.64e-07 8.69e-07 2.63e-07 2.56e-07
ENSG00000187801 ZFP69B -171020 3.18e-06 4.16e-06 6.94e-07 2.02e-06 7.91e-07 7.75e-07 2.37e-06 8.83e-07 2.69e-06 1.6e-06 3.21e-06 2.09e-06 4.79e-06 1.25e-06 1.03e-06 2e-06 1.97e-06 2.08e-06 1.45e-06 9.17e-07 1.9e-06 3.96e-06 3.36e-06 1.8e-06 4.53e-06 1.21e-06 1.59e-06 1.44e-06 3.6e-06 3.08e-06 1.99e-06 5.58e-07 5.88e-07 1.32e-06 1.68e-06 9.62e-07 9.08e-07 4.71e-07 1.3e-06 3.57e-07 2.25e-07 3.83e-06 4.11e-07 1.63e-07 4.19e-07 3.22e-07 8.16e-07 2.4e-07 3.23e-07
ENSG00000259943 AL050341.2 21120 2.99e-05 3.01e-05 6e-06 1.53e-05 5.74e-06 1.36e-05 4.26e-05 4.94e-06 2.93e-05 1.52e-05 3.66e-05 1.65e-05 4.54e-05 1.32e-05 6.95e-06 1.75e-05 1.61e-05 2.42e-05 7.52e-06 6.89e-06 1.43e-05 3.13e-05 2.94e-05 8.8e-06 4.15e-05 7.94e-06 1.32e-05 1.24e-05 3.11e-05 2.41e-05 1.83e-05 1.64e-06 2.62e-06 7.05e-06 1.14e-05 5.52e-06 3.16e-06 3.15e-06 4.8e-06 3.35e-06 1.66e-06 3.51e-05 3.5e-06 3.78e-07 2.59e-06 3.94e-06 4.08e-06 1.57e-06 1.48e-06
ENSG00000261798 \N 490111 3.21e-07 2.4e-07 7.72e-08 2.53e-07 1.09e-07 8.4e-08 2.95e-07 6.57e-08 1.86e-07 1.28e-07 2.18e-07 1.52e-07 2.74e-07 8.42e-08 7.35e-08 1.01e-07 8.64e-08 2.66e-07 1.51e-07 7.49e-08 1.6e-07 2.07e-07 1.86e-07 5.11e-08 2.59e-07 1.65e-07 1.29e-07 1.69e-07 1.44e-07 2e-07 1.35e-07 5.62e-08 4.86e-08 9.09e-08 5.24e-08 5.14e-08 9.11e-08 5.36e-08 5.7e-08 2.62e-08 5.39e-08 2.15e-07 3.26e-08 2e-08 1.14e-07 8.24e-09 9.1e-08 2.71e-09 5.19e-08