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Genes within 1Mb (chr1:40277805:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -964349 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 394294 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -40008 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -413843 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -67045 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 585623 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 19569 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 701015 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 586320 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 116418 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -253768 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 237572 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 180078 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -230936 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -701883 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -584558 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -172297 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -199485 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 19838 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -414261 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -964349 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 394294 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -413843 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -67045 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 585623 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 19569 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 701015 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 488940 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 116418 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -253768 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 237572 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 180078 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -230936 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -701883 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -584558 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -199485 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 19838 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -414261 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -964349 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 394294 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -40008 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -413843 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -67045 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 585623 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 19569 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 701015 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 488940 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 116418 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -253768 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 237572 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 180078 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -230936 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -701883 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -584558 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -199485 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 506457 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 19838 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -414261 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -964349 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 394294 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -413843 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -67045 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 585623 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 19569 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 701015 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 488940 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 116418 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -253768 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 237572 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 180078 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -230936 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 322693 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -701883 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -584558 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -172297 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -199485 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 506457 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 19838 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -414261 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -413884 eQTL 0.0489 -0.0413 0.0209 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 586320 eQTL 0.0256 -0.0761 0.0341 0.0 0.0 0.0491
ENSG00000117000 RLF 116418 eQTL 8.48e-15 0.204 0.0259 0.0095 0.00925 0.0491
ENSG00000117013 KCNQ4 -505982 eQTL 1.65e-02 -0.195 0.0812 0.0 0.0 0.0491
ENSG00000131238 PPT1 180078 eQTL 2.96e-27 0.704 0.0631 0.0 0.0 0.0491
ENSG00000164002 EXO5 -230936 eQTL 5.20e-03 -0.138 0.0493 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -172302 eQTL 0.0353 -0.132 0.0624 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 19838 eQTL 7.63e-09 -0.261 0.0449 0.0 0.0184 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N 19569 1.83e-05 2.43e-05 4.31e-06 1.27e-05 4.08e-06 1.01e-05 3.12e-05 3.78e-06 2.12e-05 1.12e-05 2.93e-05 1.09e-05 3.85e-05 9.56e-06 5.8e-06 1.21e-05 1.22e-05 1.84e-05 6.64e-06 5.45e-06 1.05e-05 2.36e-05 2.29e-05 7.43e-06 3.26e-05 6.17e-06 9.09e-06 9.67e-06 2.47e-05 2.06e-05 1.39e-05 1.65e-06 2.38e-06 6.04e-06 9.03e-06 4.55e-06 2.77e-06 2.96e-06 3.81e-06 2.9e-06 1.67e-06 2.75e-05 2.67e-06 3.62e-07 2.04e-06 3.34e-06 3.35e-06 1.48e-06 1.35e-06
ENSG00000117000 RLF 116418 4.86e-06 5.79e-06 6.4e-07 3.48e-06 1.74e-06 1.56e-06 6.83e-06 1.21e-06 4.56e-06 2.92e-06 7.68e-06 2.78e-06 9.46e-06 1.72e-06 9.95e-07 4e-06 2.92e-06 3.99e-06 1.62e-06 1.6e-06 2.75e-06 6.7e-06 4.7e-06 1.99e-06 8.28e-06 2.27e-06 2.65e-06 2.09e-06 5.45e-06 5.53e-06 2.65e-06 4.16e-07 7.23e-07 2.24e-06 1.99e-06 1.3e-06 1.1e-06 5.46e-07 9.5e-07 6.39e-07 7.37e-07 7.11e-06 5.08e-07 1.58e-07 7.75e-07 8.44e-07 1.14e-06 7.08e-07 5.97e-07
ENSG00000117016 \N -387877 1.26e-06 9.39e-07 3.32e-07 4.37e-07 3.36e-07 4.51e-07 1.13e-06 3.54e-07 1.15e-06 4.03e-07 1.39e-06 6.02e-07 1.73e-06 2.72e-07 5.56e-07 6.89e-07 7.87e-07 5.36e-07 6.91e-07 6.83e-07 4.57e-07 1.3e-06 8.27e-07 5.6e-07 1.92e-06 3.87e-07 6.91e-07 7.08e-07 1.07e-06 1.13e-06 5.58e-07 1.88e-07 1.88e-07 5.24e-07 4.07e-07 4.34e-07 4.73e-07 1.58e-07 1.96e-07 2.29e-07 3.01e-07 1.43e-06 5.66e-08 3.4e-08 1.65e-07 1.25e-07 2.41e-07 5.39e-08 1.46e-07
ENSG00000131238 PPT1 180078 3.61e-06 4.05e-06 6.52e-07 1.96e-06 1.2e-06 7.26e-07 2.48e-06 1.01e-06 2.98e-06 1.7e-06 4.13e-06 2.61e-06 6.16e-06 1.19e-06 1.3e-06 2e-06 1.83e-06 2.38e-06 1.39e-06 9.53e-07 1.92e-06 4.2e-06 3.24e-06 1.82e-06 4.51e-06 1.31e-06 1.82e-06 1.81e-06 3.78e-06 3.08e-06 2e-06 5.08e-07 7.91e-07 1.61e-06 1.75e-06 9.24e-07 9.88e-07 4.71e-07 1.33e-06 3.81e-07 2.79e-07 4.1e-06 5.43e-07 1.63e-07 4.33e-07 4.13e-07 8e-07 3.03e-07 3.24e-07
ENSG00000187801 ZFP69B -172302 3.75e-06 4.33e-06 7.79e-07 2.02e-06 1.35e-06 8.28e-07 2.48e-06 9.94e-07 3.32e-06 1.92e-06 4.2e-06 3.04e-06 6.51e-06 1.35e-06 1.42e-06 2.34e-06 2.04e-06 2.7e-06 1.36e-06 9.69e-07 2.23e-06 4.25e-06 3.48e-06 1.87e-06 4.69e-06 1.33e-06 1.9e-06 1.65e-06 3.92e-06 3.38e-06 1.98e-06 5.42e-07 6.32e-07 1.76e-06 1.98e-06 8.53e-07 9.13e-07 4.91e-07 1.34e-06 3.63e-07 3.48e-07 4.49e-06 4.44e-07 1.67e-07 3.74e-07 5.87e-07 6.63e-07 4.41e-07 3.41e-07
ENSG00000259943 AL050341.2 19838 1.8e-05 2.41e-05 4.28e-06 1.27e-05 4.07e-06 1e-05 3.09e-05 3.8e-06 2.08e-05 1.11e-05 2.91e-05 1.08e-05 3.83e-05 9.51e-06 5.8e-06 1.2e-05 1.2e-05 1.83e-05 6.61e-06 5.45e-06 1.04e-05 2.33e-05 2.27e-05 7.36e-06 3.25e-05 6.14e-06 9.03e-06 9.63e-06 2.43e-05 2.05e-05 1.38e-05 1.67e-06 2.39e-06 6.01e-06 9.01e-06 4.56e-06 2.76e-06 2.99e-06 3.75e-06 2.92e-06 1.67e-06 2.73e-05 2.68e-06 3.62e-07 2.06e-06 3.32e-06 3.35e-06 1.44e-06 1.36e-06
ENSG00000261798 \N 488829 1.01e-06 7.46e-07 1.59e-07 4.32e-07 1.81e-07 3.11e-07 6.09e-07 2.66e-07 6.53e-07 3.12e-07 1.08e-06 5.35e-07 1.02e-06 1.57e-07 4.12e-07 3.35e-07 6.07e-07 4.52e-07 3.51e-07 3.34e-07 2.39e-07 5.71e-07 4.66e-07 2.71e-07 1.16e-06 2.53e-07 4.37e-07 4.71e-07 5.56e-07 7.92e-07 3.95e-07 3.67e-08 1.35e-07 1.88e-07 3.8e-07 2.04e-07 1.97e-07 1.27e-07 7.99e-08 8.8e-09 1.39e-07 7.2e-07 6.04e-08 5.77e-09 1.85e-07 6.01e-08 1.46e-07 8.41e-08 5.77e-08