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Genes within 1Mb (chr1:40269491:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -972663 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 385980 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -48322 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -422157 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -75359 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 577309 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 11255 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 692701 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 578006 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 108104 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -262082 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 229258 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 171764 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -239250 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -710197 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -592872 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -180611 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -207799 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 11524 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -422575 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -972663 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 385980 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -422157 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -75359 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 577309 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 11255 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 692701 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 480626 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 108104 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -262082 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 229258 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 171764 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -239250 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -710197 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -592872 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -207799 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 11524 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -422575 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -972663 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 385980 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -48322 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -422157 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -75359 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 577309 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 11255 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 692701 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 480626 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 108104 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -262082 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 229258 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 171764 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -239250 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -710197 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -592872 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -207799 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 498143 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 11524 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -422575 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -972663 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 385980 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -422157 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -75359 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 577309 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 11255 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 692701 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 480626 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 108104 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -262082 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 229258 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 171764 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -239250 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 314379 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -710197 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -592872 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -180611 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -207799 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 498143 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 11524 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -422575 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -422198 eQTL 0.0489 -0.0411 0.0208 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 578006 eQTL 0.0239 -0.0767 0.0339 0.0 0.0 0.0491
ENSG00000117000 RLF 108104 eQTL 8.40e-15 0.203 0.0258 0.00967 0.00935 0.0491
ENSG00000117013 KCNQ4 -514296 eQTL 1.31e-02 -0.201 0.0808 0.0 0.0 0.0491
ENSG00000131238 PPT1 171764 eQTL 1.69e-27 0.704 0.0628 0.0 0.0 0.0491
ENSG00000164002 EXO5 -239250 eQTL 6.14e-03 -0.135 0.0491 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -180616 eQTL 0.0402 -0.128 0.0621 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 11524 eQTL 8.83e-09 -0.259 0.0447 0.0 0.0121 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N 11255 2.2e-05 2.56e-05 4.66e-06 1.31e-05 4.49e-06 1.03e-05 3.29e-05 3.78e-06 2.22e-05 1.17e-05 2.96e-05 1.26e-05 3.83e-05 1.07e-05 5.88e-06 1.35e-05 1.27e-05 1.97e-05 6.32e-06 5.52e-06 1.11e-05 2.46e-05 2.45e-05 7.36e-06 3.36e-05 6.51e-06 1.04e-05 9.69e-06 2.5e-05 2.1e-05 1.47e-05 1.62e-06 2.31e-06 6.27e-06 9.3e-06 4.68e-06 2.65e-06 2.96e-06 3.98e-06 2.86e-06 1.67e-06 2.92e-05 2.88e-06 2.62e-07 2.12e-06 3.29e-06 3.62e-06 1.48e-06 1.38e-06
ENSG00000117000 RLF 108104 4.3e-06 4.7e-06 7.79e-07 2.46e-06 8.72e-07 1.17e-06 3.15e-06 9.94e-07 4.13e-06 2.01e-06 4.16e-06 3.41e-06 6.6e-06 1.84e-06 1.3e-06 2.63e-06 1.63e-06 2.78e-06 1.47e-06 9.89e-07 1.99e-06 4.07e-06 3.4e-06 1.71e-06 4.89e-06 1.46e-06 2.55e-06 1.48e-06 4.08e-06 3.32e-06 1.96e-06 5.26e-07 7.75e-07 1.74e-06 1.96e-06 9.61e-07 9.39e-07 4.72e-07 1.05e-06 3.64e-07 2.37e-07 4.75e-06 3.83e-07 2.15e-07 3.43e-07 3.75e-07 7.59e-07 3.18e-07 3.52e-07
ENSG00000117016 \N -396191 6.97e-07 4.78e-07 8.99e-08 3.62e-07 1.11e-07 1.74e-07 4.68e-07 1.4e-07 3.03e-07 2.06e-07 4.39e-07 3.08e-07 5.39e-07 1.1e-07 1.45e-07 1.96e-07 1.69e-07 3.3e-07 1.51e-07 9.17e-08 1.89e-07 2.96e-07 3.07e-07 1.21e-07 5.15e-07 2.46e-07 2.22e-07 1.95e-07 2.57e-07 3.15e-07 2.11e-07 8.14e-08 5.77e-08 1.21e-07 2.58e-07 6.83e-08 1.02e-07 7.51e-08 4.55e-08 7.67e-08 3.5e-08 3.55e-07 4.3e-08 1.72e-08 8.24e-08 1.78e-08 9.46e-08 7.14e-09 5.56e-08
ENSG00000131238 PPT1 171764 1.91e-06 2.42e-06 2.8e-07 1.57e-06 4.68e-07 7.28e-07 1.3e-06 5.89e-07 1.78e-06 7.42e-07 1.9e-06 1.45e-06 2.9e-06 8.7e-07 4.02e-07 1.22e-06 1.07e-06 1.34e-06 5.59e-07 7.55e-07 6.19e-07 1.96e-06 1.77e-06 1.01e-06 2.65e-06 1.17e-06 1.15e-06 1.05e-06 1.69e-06 1.48e-06 8.36e-07 2.49e-07 3.72e-07 6.49e-07 9.13e-07 6.32e-07 6.89e-07 3.26e-07 7.04e-07 2.03e-07 3.55e-07 2.63e-06 4.6e-07 1.06e-07 3.56e-07 3.24e-07 3.78e-07 2.44e-07 3.12e-07
ENSG00000187801 ZFP69B -180616 1.65e-06 2.1e-06 2.52e-07 1.44e-06 3.95e-07 6.38e-07 1.29e-06 4.44e-07 1.78e-06 6.73e-07 1.94e-06 1.29e-06 2.68e-06 5.83e-07 3.4e-07 1.06e-06 1.04e-06 1.21e-06 5.9e-07 6.46e-07 6.64e-07 1.95e-06 1.63e-06 8.09e-07 2.42e-06 1.01e-06 1.12e-06 1.05e-06 1.75e-06 1.29e-06 7.46e-07 2.54e-07 3.58e-07 5.91e-07 8.27e-07 6.2e-07 7.12e-07 3.68e-07 6.01e-07 2.09e-07 3.04e-07 2.35e-06 4.13e-07 9.66e-08 3.65e-07 3.22e-07 3.78e-07 2.23e-07 2.87e-07
ENSG00000259943 AL050341.2 11524 2.17e-05 2.51e-05 4.6e-06 1.3e-05 4.31e-06 1.01e-05 3.25e-05 3.8e-06 2.19e-05 1.16e-05 2.93e-05 1.23e-05 3.8e-05 1.07e-05 5.8e-06 1.34e-05 1.24e-05 1.96e-05 6.14e-06 5.45e-06 1.09e-05 2.43e-05 2.43e-05 7.18e-06 3.35e-05 6.43e-06 1.02e-05 9.67e-06 2.47e-05 2.09e-05 1.46e-05 1.65e-06 2.29e-06 6.16e-06 9.11e-06 4.67e-06 2.6e-06 2.99e-06 3.99e-06 2.79e-06 1.66e-06 2.87e-05 2.81e-06 2.62e-07 2.1e-06 3.2e-06 3.64e-06 1.44e-06 1.37e-06
ENSG00000261798 \N 480515 3.71e-07 2.3e-07 7e-08 2.48e-07 1.02e-07 1.25e-07 2.95e-07 7.79e-08 1.98e-07 1.15e-07 2.18e-07 1.57e-07 2.94e-07 8.54e-08 6.93e-08 1.13e-07 6.17e-08 2.33e-07 7.11e-08 6.58e-08 1.34e-07 1.98e-07 1.89e-07 3.83e-08 2.59e-07 1.76e-07 1.31e-07 1.47e-07 1.4e-07 1.46e-07 1.35e-07 5.01e-08 4.76e-08 9.72e-08 7.44e-08 4.68e-08 6.77e-08 6.66e-08 4.82e-08 6.67e-08 4.42e-08 1.79e-07 2.94e-08 7.2e-09 3.66e-08 9.86e-09 7.8e-08 0.0 4.61e-08